BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31400.1
Length=1136
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491601 jgi|Araly1|491601|fgenesh2_kg.7__1034__AT4G31400.1 1729 0.0
Ahg472227 jgi|Araly1|472227|fgenesh2_kg.1__2181__AT4G31400.1 545 2e-154
> Ahg491601 jgi|Araly1|491601|fgenesh2_kg.7__1034__AT4G31400.1
Length=1121
Score = 1729 bits (936), Expect = 0.0
Identities = 1066/1128 (95%), Gaps = 11/1128 (1%)
Strand=Plus/Plus
Query 3 AAACACAAACGTAACAAGGATTCGAGCTCTCTCTAG-ACGATGCAAGCCAAAATCAATTC 61
||||||| || ||| ||||||||||||||||||| | ||||||||||| |||||||||||
Sbjct 1 AAACACAGACCTAAGAAGGATTCGAGCTCTCTCT-GTACGATGCAAGCAAAAATCAATTC 59
Query 62 TTTCTTCAAGCCCTCCTCTTCTTCTTCTATCGCTGCCTCAGTAACAACAGACACAGACGA 121
|||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 60 TTTCTTCAAG--C-CCTCTTCTTCTTCTATCGCTGCCTCAGTAACAACAGACGCAGACGA 116
Query 122 TGGTTTAGCTGTCTGGGAGAACAATCGGAACGCCATCGTCAACACCTACCAGCGTCGATC 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TGGTTTAGCTGTCTGGGAGAACAATCGGAACGCCATCGTCAACACCTACCAGCGTCGATC 176
Query 182 TGCGATTACCGAAAGAAGTGAAGTGCTTAAAGGATGCATCGAAAAGACGCTGAAGAAAGG 241
||||||| |||| |||||| ||||||||||||||||||||| ||| | |||||||||||
Sbjct 177 TGCGATTCCCGATAGAAGTCAAGTGCTTAAAGGATGCATCGGGAAGCCACTGAAGAAAGG 236
Query 242 ATCTTCTTCTGTACCTAAAAATCACAAAAAGAAGCGTAATTATACACAATTCCACTTAGA 301
|||||| |||||||||||||||| |||||||||||| |||||||| ||||||||||||||
Sbjct 237 ATCTTCCTCTGTACCTAAAAATCTCAAAAAGAAGCGCAATTATACGCAATTCCACTTAGA 296
Query 302 GTTGGGCCAATCTGATTTTCTTCTCAGACATTGCGCAGAATGTGGAGCTAAGTATGCTCC 361
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 297 GTTGGGCCAATCTGATTTTCTTCTCAGACATTGCCCACAATGTGGAGCTAAGTATGCTCC 356
Query 362 TGGAGATGAATTAGATGAGAAGAACCATCAAAGTTTTCACAAGGACTATATGTATGGACT 421
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TGGAGATGAATTAGACGAGAAGAACCATCAAAGTTTTCACAAGGACTATATGTATGGACT 416
Query 422 CCCTTTTAAGGGTTGGCAGAACGAGAAAGCGTTTACATCACCTTTGTTCATCAAGAACCG 481
|||||||||||||||||||||||||||||| || ||||| |||| ||||| |||||||||
Sbjct 417 CCCTTTTAAGGGTTGGCAGAACGAGAAAGCCTTCACATCGCCTTCGTTCAACAAGAACCG 476
Query 482 CATCGTTATGGTATCAGAAAATGATTCCCCTGCACACAGAAACAAGGTGCAAGAGGTTGT 541
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 477 CATCATTATGGTATCAGAAAATGATTCCCCTGCACATAGAAACAAGGTGCAAGAGGTTGT 536
Query 542 GAAAATGATGGAGGTTGAGTTGGGTGAGGATTGGATTCTTCACCAACATTGTAAGGTTTA 601
|||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 537 GAAAATGATGGAAGTCGAGTTAGGTGAGGATTGGATTCTTCACCAACATTGTAAGGTTTA 596
Query 602 TCTATTCATATCCTCTCAGAGGATCTCTGGATGTCTAGTTGCTGAACCAATTAAGGAAGC 661
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 597 TCTATTCATATCCTCTCAGAGGATCTCCGGATGTCTTGTTGCAGAACCAATTAAGGAAGC 656
Query 662 ATTTAAGCTCATAGCTTCTCCTGATGATGAAAGACAGTTACAAAAAGAGAGCTCATCCTC 721
||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 657 ATTTAAGCTCATACCTTCTCCTGATGATGAAAGACAGTTACAAAAAGAGAGCACCTCCTC 716
Query 722 GCCTTCAACCTCCATTCAGTTTGGAAACATTGT-TCTACAAAGAGAGGTATCGAAAAGAT 780
||||||||||||||||||||||||||||||||| | |||||||||| ||||| |||||||
Sbjct 717 GCCTTCAACCTCCATTCAGTTTGGAAACATTGTGT-TACAAAGAGAAGTATCTAAAAGAT 775
Query 781 GTCGAACATCAGATGATAGATTAGA-TAACGGAGTCATT-GTATGTGAAGAAGAAGCTAA 838
||||| ||||||||||||||||||| | ||||| || | ||||| || |||||||||||
Sbjct 776 GTCGAGCATCAGATGATAGATTAGACTG-CGGAG-CAATAGTATGCGAGGAAGAAGCTAA 833
Query 839 ACCAGCTGTTTGTGGGATTAGAGCGATTTGGGTCTCACCTTCTAATAGAAGAAAAGGCAT 898
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 834 ACCAGATGTTTGTGGGATTAGAGCGATTTGGGTCTCACCTTCTAACAGAAGAAAAGGCAT 893
Query 899 AGCCACATGGTTACTCGATACCACGAGGGAAAGCTTTTGCAACAATGGGTGCATGCTGGA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 894 AGCCACATGGTTACTCGATACCACGAGGGAAAGCTTTTGCAACAATGGGTGCATGTTGGA 953
Query 959 GAAATCTCAGTTAGCATTTTCACAACCAAGCTCCATAGGAAGATCTTTTGGATCTAAATA 1018
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 954 GAAATCTCAGTTAGCATTTTCACAACCAAGCTCCATTGGAAGATCTTTTGGATCTAATTA 1013
Query 1019 TTTTGGAACTTGTTCATTCTTACTTTACAAAGCTCAGCTAATTGATACTCACTTTTCTTA 1078
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1014 TTTTGGAACTTGTTCATTCTTAGTTTACAAAGCTCAGCTAATTGATACTCTCTTTTCTTA 1073
Query 1079 AACGGCATAGGTTTCATCACATCACAACCATCATCTTCACTGTTACTC 1126
|||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1074 AACGGCATAGATTTCATTACATCACAACCATCATCTTCACTGTTACTC 1121
> Ahg472227 jgi|Araly1|472227|fgenesh2_kg.1__2181__AT4G31400.1
Length=933
Score = 545 bits (295), Expect = 2e-154
Identities = 331/348 (95%), Gaps = 3/348 (1%)
Strand=Plus/Plus
Query 780 TGTCGAACATCAGATGATAGATTAGATAACGGAGTC-ATTGTATGTGAAGAAGAAGCTAA 838
|||||| ||||| |||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct 586 TGTCGAGCATCAAATGATAGATTAGATTACGGAG-CGATTGTATGTGAAGAAGAAGCTAA 644
Query 839 ACCAGCTGTTTGTGGGATTAGAGCGATTTGGGTCTCACCTTCTAATAGAAGAAAAGGCAT 898
||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 645 ACCAGATGTTTGTGGGATTAGAGCGATTTGGGCCTCACCTTCTAACAGAAGAAAAGGCAT 704
Query 899 AGCCACATGGTTACTCGATACCACGAGGGAAAGCTTTTGCAACAATGGGTGCATGCTGGA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 705 AGCCACATGGTTACTCGATACCACGAGGGAAAGCTTTTGCAACAATGGGTGCATGTTGGA 764
Query 959 GAAATCTCAGTTAGCATTTTCACAACCAAGCTCCATAGGAAGATCTTTTGGATCTAAATA 1018
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||
Sbjct 765 GAAATCTCAGTTAGCATTTTCACAACCAAGCACCATGGGAAGATCTTTTGGATCTAATTA 824
Query 1019 TTTTGGAACTTGTTCATTCTTACTTTACAAAGCTCAGCTAATTGATACTCACTTTTCTTA 1078
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 825 TTTTGGAACTTGTTCATTCTTAGTTTACAAAGCTCAGCTAATTGATACTCACTTTTCTTA 884
Query 1079 AACGGCATAGGTTTCATCACATCACAACCATCATCTTCACTGTTACTC 1126
| ||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 885 A-CGGCATACATTTTATCACATCACAACCATCATCTTCACTGTTACTC 931
Score = 507 bits (274), Expect = 9e-143
Identities = 305/320 (95%), Gaps = 2/320 (1%)
Strand=Plus/Plus
Query 130 CTGTCTGGGAGAACAATCGGAACGCCATCGTCAACACCTACCAGCGTCGATCTGCGATTA 189
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 86 CTGTCTGGGAGAACAATCGGAACGCCATCGTCAACACCTATGAGCGTCGATCTGCGA-TA 144
Query 190 -CCGAAAGAAGTGAAGTGCTTAAAGGATGCATCGAAAAGACGCTGAAGAAAGGATCTTCT 248
|||| |||||| |||||||||| |||||||||| ||| ||||||||||||||||||||
Sbjct 145 CCCGATAGAAGTCAAGTGCTTAAGGGATGCATCGGGAAGCCGCTGAAGAAAGGATCTTCT 204
Query 249 TCTGTACCTAAAAATCACAAAAAGAAGCGTAATTATACACAATTCCACTTAGAGTTGGGC 308
|||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||
Sbjct 205 TCTGTACCTAAAAATCTCAAAAAGAAGCGCAATTATACGCAATTCCACTTAGAGTTGGGC 264
Query 309 CAATCTGATTTTCTTCTCAGACATTGCGCAGAATGTGGAGCTAAGTATGCTCCTGGAGAT 368
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 265 CAATCTGATTTTCTTCTCAGACATTGCGCACAATGTGGAGCTAAGTATGCTCCTGGAGAT 324
Query 369 GAATTAGATGAGAAGAACCATCAAAGTTTTCACAAGGACTATATGTATGGACTCCCTTTT 428
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 325 GAATTAGATGAGAAGAACCATCAAAGTTTTCACAAGGACTATATGTATGGAATCCCTTTT 384
Query 429 AAGGGTTGGCAGAACGAGAA 448
||||||||||||||||||||
Sbjct 385 AAGGGTTGGCAGAACGAGAA 404
Score = 150 bits (81), Expect = 2e-35
Identities = 110/122 (90%), Gaps = 9/122 (7%)
Strand=Plus/Plus
Query 475 AGAACCGCATCGTTATGGTATCAGAAAATGATTCCCCTGCACACAGAAACAAGGTGCAAG 534
||||||||||| |||||||||||||||||||||||||||||||||| || | |
Sbjct 401 AGAACCGCATCATTATGGTATCAGAAAATGATTCCCCTGCACACAG---GAA----C-A- 451
Query 535 AGGTTGTGAAAATGATGGAGGTTGAGTTGGGTGAGGATTGGATTCTTCACCAACATTGTA 594
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 452 AGGTTGTGAAAATGATGGAGGTTGAGTTAGGTGAGGATTGGATTCTTCACCAACATTGTA 511
Query 595 AG 596
||
Sbjct 512 AG 513
Score = 97.1 bits (52), Expect = 2e-19
Identities = 63/68 (93%), Gaps = 2/68 (3%)
Strand=Plus/Plus
Query 3 AAACACAAACGTAACAAGGATTCGAGCTCTCTCTAG-ACGATGCAAGCCAAAATCAATTC 61
|||||||||| ||| || |||||||||||||||| | |||||||||||||||||||||||
Sbjct 1 AAACACAAACCTAAGAAAGATTCGAGCTCTCTCT-GTACGATGCAAGCCAAAATCAATTC 59
Query 62 TTTCTTCA 69
||||||||
Sbjct 60 TTTCTTCA 67
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42354560787
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5