BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31410.1
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491599 jgi|Araly1|491599|fgenesh2_kg.7__1032__AT4G31410.1 1893 0.0
> Ahg491599 jgi|Araly1|491599|fgenesh2_kg.7__1032__AT4G31410.1
Length=1389
Score = 1893 bits (1025), Expect = 0.0
Identities = 1312/1440 (91%), Gaps = 62/1440 (4%)
Strand=Plus/Plus
Query 1 CTGCGAAACACTATCCCCACAAGCAAACCCCATCATCTCCcttcttcttcttcttcttcC 60
|||||| |||||||||||||||||||||||||||| || | | ||||||||
Sbjct 1 CTGCGATACACTATCCCCACAAGCAAACCCCATCA-------TC-GC--C--CTTCTTCC 48
Query 61 ACTTCCCTTTGTAACTTTCAATCTCAGCTAATATCAAGTAAC-G--T----GGAAAGGAT 113
| || ||||||||||||||||||||||||| ||||||||||| | | ||||| |||
Sbjct 49 A-TTTCCTTTGTAACTTTCAATCTCAGCTACTATCAAGTAACAGATTCCGGGGAAATGAT 107
Query 114 TTGTTCCGTCAAAGGTTGGTGATTATACAGAGACTGAGTTCC-T---GATAAGTTGGATT 169
|| |||| |||| ||||| ||||| | ||| ||| |||||| | ||||||||||| |
Sbjct 108 TTCTTCCATCAAGGGTTGCTGATTGT--AGATACTTAGTTCCTTCCCGATAAGTTGGAAT 165
Query 170 GAGCTTGTTTTCATTTGCGGATCTTTGAGAAAAAAGTTTGCAACTTTATGGCTCTGGAAC 229
| | || |||| ||| | | | | | | | ||||||||||||
Sbjct 166 AATC-TG-TTTCCTTT---G--C---G-G-----A---T----C-TTATGGCTCTGG--- 198
Query 230 AACAACATGTTTGTGAAAAGCGGCTTCAAGCCAAGACCTTTTCTACCCAAGAGTTTCAGT 289
||| |||||||||||| |||||||||||||| |||||||||| |||||||||||||||||
Sbjct 199 AACTACATGTTTGTGACAAGCGGCTTCAAGCTAAGACCTTTTGTACCCAAGAGTTTCAGT 258
Query 290 TGACTCTCAATTGGGATGATTTAACTTGTCCCATTTGTTTGGATTTCCCTCACAATGGTG 349
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 TTACTCTCAATTGGGATGATTTAACTTGTCCCATTTGTTTGGATTTCCCTCACAATGGTG 318
Query 350 TGCTTCTCCAGTGTTCTTCTTACGGAAACGGTTGCCGTGCTTTTGTCTGCAATACTGATC 409
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||
Sbjct 319 TGCTTCTCCAGTGTTCTTCTTACGAAAACGGCTGCCGTGCTTTTGTCTGCAATACAGATC 378
Query 410 ACCTTCACTCTAACTGTTTGGATCGTTTCATTAGCGCCTGTGGTACTGAATCACCTCCTG 469
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 379 ACCTTCACTCTAACTGTTTGGATCGTTTCATTAGCGCCTGTGGTACTGATTCACCTCCAG 438
Query 470 CTCCTGATGAGCCTCGCTCTAAGGTTTTAGAAGAGAGTTGCAAACCTGTGTGTCCACTGT 529
|||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 439 CTCCTGATGAACCTCGCTCTAAGGTTTTAGAAGAAAGTTGCAAACCGGTGTGTCCACTGT 498
Query 530 GTAGAGGAGAAGTTACTGGCTGGCTTGTTGTAGAAGAAGCTCGTCTTCGTCTTGATGAGA 589
||||||||||||||||||||||||||||||| |||||||| ||| | |||||||| ||||
Sbjct 499 GTAGAGGAGAAGTTACTGGCTGGCTTGTTGTGGAAGAAGCCCGTGTCCGTCTTGACGAGA 558
Query 590 AAAAACGTTGCTGTGAGGAAGAACGATGCAGGTTTATGGGTACTTACTTGGAGCTTCGCA 649
||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 559 AAAAACGTTGCTGCGAGGAAGAAAGATGCAGGTTTATGGGTACTTACACAGAGCTTCGTA 618
Query 650 AACATGCTCAGTCAGAGCATCCGGATTCTCGTCCTTCAGAAATTGATCCAGCACGGAAGC 709
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 AACATGCTCAGACTGAGCATCCGGATTCTCGTCCTTCAGAAATTGATCCAGCACGGAAGC 678
Query 710 TTGACTGGGAGAATTTCCAGCAGTCGTCTGAAATAATCGACGTGTTGAGCACAATTCACT 769
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 679 TTGATTGGGAGAATTTCCAGCAGTCGTCTGAAATAATTGACGTGTTGAGCACAATTCACT 738
Query 770 CAGAAGTTCCAAGAGGAGTGGTTTTAGGGGACTATGTGATCGAATATGGAGATGATGACA 829
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 CGGAAGTTCCAAGAGGAGTGGTTTTAGGGGACTATGTGATCGAATATGGAGATGATGACA 798
Query 830 CAGGAGATGAATTTGAGGATGTTCCCAACAATGAAGGAAACTGGTGGACATCTTGTATTC 889
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 799 CAGGAGATGAATTTGAGGATGTTCCTAACAATGAAGGAAACTGGTGGACATCTTGTATTC 858
Query 890 TCTATCAAATGTTTGACAATATAAGGAATGCCAGGAATCGAAGAAGATCAAGAATGAGTG 949
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 859 TGTATCAAATGTTTGACAATATAAGGAATGCCAGGAATCGAAGAAGATCAAGAATGAGCG 918
Query 950 AGAGTAGGAGAGGGAGTCGCCGCTCTAGCTATGAGAATTCCAACTCTGATGACAGCTCAG 1009
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 919 AGAGCAGGAGAGGGAGTCGCCGCTCTAGCTATGAGAACTCCAACTCTGATGACAGCTCAG 978
Query 1010 TAGCATCCATAGAGTTTCCGGAGTATAGAGTAGATGAGATCGATGACGAGTTCATCAGCA 1069
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 979 TAGCATCCATAGAGTTCCCGGAGTATAGAGTAGATGAGATCGATGATGAGTTCATCAGCA 1038
Query 1070 CAAGTGGAGCTAACAGAAGTAGCTCTATGCACCAAAGTTCAAGAAGGCGTCGAACCCGCT 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 CAAGTGGAGCTAACAGAAGTAGCTCTATGCACCAAAGTTCAAGAAGGCGTCGAACCCGCT 1098
Query 1130 TCTATGAAAATTAGTCAGCTGGAAAATGAAGCGAAGCAAATGATGCAGACCAGCCTATTT 1189
||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||
Sbjct 1099 TCTATGAAAATTAGTCAGCTGGAAAATGAAGCGAAGCGAATGAAGTAGACCAGCCTATTC 1158
Query 1190 GTAGCCAGTGttcttggttttggacctctttcttctttttctttttgtttctacacataa 1249
||||||||||||||||||||||||||||| ||| ||| |||||| ||||||||||||
Sbjct 1159 GTAGCCAGTGTTCTTGGTTTTGGACCTCTCTCT-CTT---CTTTTTCCTTCTACACATAA 1214
Query 1250 attttattttaggtttgtcttGTGACATTACTCGCAGCAGTCGCAGCCTTTGTACAAAAA 1309
|||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1215 ATTT-ATTTTAGGTTTGTCTTGTGACATTACTCGCAGC---CACAGCCTTTGTACAAAAA 1270
Query 1310 CTAAACAAAAAGCCTTTTTGGGATATTGTAGTACCCTTTTGTCGTTGTCTCTTCTTTGTT 1369
| |||| ||||||||||||||| |||||||||||||||| ||||| ||||||||||||||
Sbjct 1271 CAAAACTAAAAGCCTTTTTGGGTTATTGTAGTACCCTTT-GTCGTGGTCTCTTCTTTGTT 1329
Query 1370 TTACATGCATCTCTGGACAATGTAGATATTGAGAGTAAATCAGAAGTCAACGTTCGTGTA 1429
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1330 TTACATGCATCTCTGAACAATGTAGATATTGAGAGTAAATCAGAAGTCTACGTTCGTGTA 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53516794225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5