BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31420.2
Length=1550
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328581 jgi|Araly1|328581|fgenesh1_pm.C_scaffold_7000808 1984 0.0
Ahg481305 jgi|Araly1|481305|fgenesh2_kg.4__365__AT2G24500.1 246 3e-64
> Ahg328581 jgi|Araly1|328581|fgenesh1_pm.C_scaffold_7000808
Length=1218
Score = 1984 bits (1074), Expect = 0.0
Identities = 1172/1220 (96%), Gaps = 4/1220 (0%)
Strand=Plus/Plus
Query 162 ATGCCTGGTTTAACATGTAACGCGTGTAACATGGAGTTCAAGGACGAAGAAGAACGTAAC 221
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1 ATGCCTGGTTTAACATGTAACGCGTGCAACATGGAGTTCAAGGACGAAGAAGAGCGTAAC 60
Query 222 CTTCATTACAAATCCGATTGGCACCGCTACAATCTCAAGCGCAAGGTGGCTGGAGTTCCT 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTCATTACAAATCCGATTGGCACCGCTACAATCTCAAGCGCAAGGTGGCTGGAGTTCCT 120
Query 282 GGAGTTACAGAAGCCTTGTTTGAGGCTAGACAATCTGCTCTTGCTCAGGAGAAGAATAAA 341
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 GGAGTTACAGAAGCCTTGTTTGAGGCTAGACAATCTGCTCTTGCTCTGGAGAAGAATAAA 180
Query 342 TCAAATGAAGCACCTATGCTTTATACTTGTGCAATCTGTGCTAAAGGTTACAGGAGTTCC 401
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 181 TCAAATGAAGCACCTATGCTTTATACTTGTGGGATCTGTGGTAAAGGTTACAGGAGTTCC 240
Query 402 AAGGCTCATGAGCAGCATCTTCAGTCGCGTAGCCATGTTTTGCGGGTTTCACAAGGGACA 461
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 241 AAGGCTCATGAGCAGCATCTTCAGTCGCGGAGCCATGTTTTGCGGGTTTCACAAGGGGCA 300
Query 462 TCAATCAACGGAGAGGAGGATATAGCGATTATCAGGCAACTTCCTCGCCGTGTTCAACAC 521
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCAATCAATGGAGAGGAGGATATAGCGATTATCAGGCAACTTCCTCGCCGTGTTCAACAC 360
Query 522 AGGGGTTCCATTGATGATGATAGTGAAGATGAATGGGTGGAGGTTGATTCTGACGAGGAA 581
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 361 AGGGGTTCCATTGATGATGATAGTGATGATGAATGGGTGGAGGTTGATTCTGACGACGAA 420
Query 582 TTGGCTGCTGAAGAAGCCTCTGATTCTTTGTCTAAGTTGAATGTGAATGAGTCTGGATCT 641
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 TTGGCTGCTGAAGAAGCCTCTGATTCTTTGTCTAAGTTGAATGTTAATGAGTCTGGATCT 480
Query 642 GCTGAAGATATGGATGATGATGGTGATGCAGATAAGTATGAGCTGGATCCAACCTGCTGT 701
|||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||
Sbjct 481 GCTGAAGATATGGATGATGACGATGATGCAGACAAGTATGAGCTGGATCCAACCTGCTGT 540
Query 702 TTGATGTGTGACAAAAAACATAAGACCTTAGAGAGCTGTATGCTTCACATGCATAAGCAT 761
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 541 TTGATGTGTGACAAAACCCATAAGACCTTAGAGAGCTGTATGGTTCACATGCATAAGCAC 600
Query 762 CATGGTTTCTTTATTCCCGATATTGAGTATCTCAAGGATCCTGAAGGGCTTCTCACTTAC 821
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CATGGTTTCTTCATTCCCGATATTGAGTATCTCAAGGATCCTGAAGGGCTTCTCACTTAC 660
Query 822 CTTGGTCTTAAGGTCAAGAGAGACTTCATGTGTCTGTACTGCAATGAGCTGTGCCGTCCA 881
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 661 CTCGGTCTCAAGGTCAAGAGAGACTTCATGTGTCTATACTGCAATGAGCTGTGCCGTCCA 720
Query 882 TTCAGCAGCTTAGAAGCTGTAAGAAAACATATGGAAGCAAAGAGTCATTGCAAACTGCAT 941
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 721 TTCAGCAGCTTAGAAGCTGTAAGAAAGCATATGGAAGCAAAGAGTCATTGCAAACTGCAT 780
Query 942 TATGGTGATGGTGATGATGAAGAAGATGCTGAGCTAGAAGAGTTTTATGACTACAGCAGC 1001
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 781 TATGGTGATGGTGATGATGATGAAGATGCTGAACTAGAAGAGTTCTATGACTACAGCAGC 840
Query 1002 AGCAGCTATGTTGATGAAGCTGGAAAGCAAATTGTTGTATCTGGTGAAACAGACAATACT 1061
||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||| |||
Sbjct 841 AGCAGCTATGTTGATGAAGCTGGGAAGCAGATTGTTGTAGCTGGTGAAACCGACAACACT 900
Query 1062 GTAGAACTCGTTGGTGGTTCTGAGCTCTTGATCACGGAGAAGTCCGAGAACACAACAACG 1121
|||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| ||||
Sbjct 901 GTAGAACTTGTTGGTGGTTCTGAGCTCCTGATCACGGAGAATTCCGAGAACACAAAAACG 960
Query 1122 TCTAAAACTCTCGGGTCCCGTGAATTCATGCGTTACTACAGACAGAAGCCACGCCCAACT 1181
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 961 TCTAAAACTCTCGGGTCCCGTGAATTCATGCGTTACTACAGACAGAAGCCTCGCCCAAAT 1020
Query 1182 TCTCAAGACAGCAACCAGATAAT-TGCCTCTTTATCTTCAAGGTACAAGAGCCTGGGTCT 1240
|||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1021 TCTCAAAACAGCAACCAGATAATGT-CCTCTTTATCTTCAAGGTACAAGAGCCTGGGTCT 1079
Query 1241 GAAGACAGTACCGTCGAAAGAGGAGACTTTGAGGATGAAAGTGCGCAAGGAGATGAG-CA 1299
|||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1080 GAAGACGGTACCCTCAAAAGAGGAGACATTGAGGATGAAAGTGCGCAAGGAGATGAGTCA 1139
Query 1300 AGAGAGGCGAGACAATGCGTACCAAGATCGGAGTGAAGAGTAATGTCATAAGAAACTTGC 1359
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 -GAGAGGTGAGACAATGCGTACCAAGATCGGAGTGAAGAGTAATGTCATAAGAAACTTGC 1198
Query 1360 CCAATAACGTCCCATATTAG 1379
||||||||||||||||||||
Sbjct 1199 CCAATAACGTCCCATATTAG 1218
> Ahg481305 jgi|Araly1|481305|fgenesh2_kg.4__365__AT2G24500.1
Length=1455
Score = 246 bits (133), Expect = 3e-64
Identities = 285/357 (80%), Gaps = 16/357 (4%)
Strand=Plus/Plus
Query 155 AGAGA-AGATGCCTGGTTTAACATGTAACGCGTGTAACATGGAGTTC-AAGGACGAAGAA 212
||||| ||||| | | |||| | ||||| ||||||||| |||||| || ||||| |
Sbjct 115 AGAGAGAGATGTCAGCTTTAGCTTGTAATTCGTGTAACAAAGAGTTCGAA-GACGACGCT 173
Query 213 GAACGTAACCTTCATTACAAATCCGATTGGCACCGCTACAATCTCAAGCGCAAGGTGGCT 272
|| | || |||| ||||||||||| |||||||| |||||||||||||||||| | |||
Sbjct 174 GAGCAAAAGTTTCACTACAAATCCGAGTGGCACCGTTACAATCTCAAGCGCAAGATAGCT 233
Query 273 GGAGTTCCTGGAGTTACAGAAGCCTTGTTTGAGGCTAGACAATCTGCTCTTGCTCAGGAG 332
|| ||||||||||| ||||| || || ||||| ||||||||| ||||| | ||||| |||
Sbjct 234 GGTGTTCCTGGAGTAACAGAGGCATTATTTGAAGCTAGACAAGCTGCTATAGCTCAAGAG 293
Query 333 AAGAATAAATCAAATGAAGCACCTATGCTTTATACTTGTGCAATCTGTGCTAAAGGTTAC 392
||| |||| | ||||||||| |||||||||||||||| ||||||| ||||||||||
Sbjct 294 AAGGTTAAAGCTGTTGAAGCACCAATGCTTTATACTTGTGGAATCTGTAATAAAGGTTAC 353
Query 393 AGGAGTTCCAAGGCTCATGAGCAGCATCTTCA-GTCGC-GTAGCCATGTTTTGCGGGTTT 450
||||||||||||||||||||||||||| || | |||| | || || |||||| || ||
Sbjct 354 AGGAGTTCCAAGGCTCATGAGCAGCAT-TTGAAGTCGAAG-AGTCACGTTTTGAAGGCTT 411
Query 451 CACAAGGGACATCAATCAACGGAGAGGAGGATATAGCGATTATCAGGCAACTTCCTC 507
| | || | | ||||||||| |||||| ||||||||| | ||| |||||||
Sbjct 412 C----G--ACG--AGT-AACGGAGAGCAGGATAAAGCGATTATTAAGCAGCTTCCTC 459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58049533380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5