BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31430.2
Length=2104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888976 jgi|Araly1|888976|Al_scaffold_0007_962 2628 0.0
> Ahg888976 jgi|Araly1|888976|Al_scaffold_0007_962
Length=1716
Score = 2628 bits (1423), Expect = 0.0
Identities = 1635/1734 (94%), Gaps = 27/1734 (2%)
Strand=Plus/Plus
Query 55 ATGGATTCCGTCTCCGGTTACGCCGCCGGAGCAGGTCAGCCTCG-AGTCGGTGGGAAAAT 113
|||||||||||||||||||||||||| ||||||||||||||||| | ||| || |||||
Sbjct 1 ATGGATTCCGTCTCCGGTTACGCCGCTGGAGCAGGTCAGCCTCGTA-CCGGAGGAAAAAT 59
Query 114 TGTTCGACCACGACGCACCGCTGTTGTCAGGACGCCGTGTGAGCGCCCCGTTCAGAGATC 173
||||||||||||||||||||| | ||||||||||||| ||| |||||| ||| ||||||
Sbjct 60 TGTTCGACCACGACGCACCGCCGCCGTCAGGACGCCGTATGACCGCCCCTTTCCGAGATC 119
Query 174 CCGAGATCCTCCTCAGCAAAACCCTAGTTGGATCTCCAGGCTCGTTTACAAACCCGCCAG 233
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CCGAGATCCCCCTCAGCAAAACCCTAGTTGGATCTCCAGGCTCGTTTACAAACCCGCCAG 179
Query 234 CGTAATTGCTTCCGGCGCCGGAAAATTCATTTCTTCCGTCGTCTTCTCCGACTCTTCCTC 293
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 180 CGTAATTGCCTCCGGCGCCGGAAAATTCATTTCTTCCGTCGTCTTCTCCGACTCGTCCTC 239
Query 294 ATCTTCGGAGGAGGACGAGGATTCATCTTCAGATATTGATGGTGATGAGGATGTTGAGAA 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATCTTCGGAGGAGGACGAGGATTCATCTTCAGATATTGATGGTGATGAGGATGTTGAGAA 299
Query 354 GAACAATCCCGATTTTACTGAAGAGGACCTTCTGAGTGCCCAGCAACCAAGCATTCAACG 413
||||| | ||||||||||||||||||||||||||| |||||||||||||| ||| |||||
Sbjct 300 GAACATTACCGATTTTACTGAAGAGGACCTTCTGACTGCCCAGCAACCAACCATCCAACG 359
Query 414 ACTCAGTTCTAAGCGTGTAATTGAGCAGCTTCTCTTGCAAGAAACATTTGCAAGGGAAGA 473
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 360 ACTCAGTTCTAAGCGTGTAATTGAGCAGCTTCTCATGCAAGAAACATTTGCAAGGGAAGA 419
Query 474 GGGTGATAGGTTAATAGATATCATCAAGGCTAGGGTTGTAGATCATCCCAGCGTCCCCTC 533
||||||||| ||||||||||||||||||||||||||||| |||||| | || ||||||||
Sbjct 420 GGGTGATAGATTAATAGATATCATCAAGGCTAGGGTTGTCGATCATTCTAGTGTCCCCTC 479
Query 534 TGCTATTGAGACGAGTCATGATGACTATGGATTGACAAGCGACGTGAATGTGGGTGAAAT 593
|||| ||||| ||| ||| ||||| ||||||||||||| || |||||||| |||||||
Sbjct 480 TGCTGTTGAGGGGAGGCATAATGACAATGGATTGACAAGTGATGTGAATGTTTGTGAAAT 539
Query 594 GTCCAATACAGCTGTCATGGAAGCAAGAAAATGGTTGGAGGAGAAGAAATCAGGATCAAG 653
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTCCAATACAACTGTCATGGAAGCAAGAAAATGGTTGGAGGAGAAGAAATCAGGATCAAG 599
Query 654 TTCAAAGTATAAAGCAACTGAAGATGGTGCTGGATCGCCTGTGGACGTGGCCAAGTCTTA 713
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTCAAAGTATACAGCAACTGAAGATGGTGCTGGATCGCCTGTGGACGTGGCCAAGTCTTA 659
Query 714 TATGCGAGCTCGTCTGCCATGGGGATCTCCAGCTGCGAATAATTTAGATTTTCGATCACC 773
||||||||||||||||||||||||||||||| || ||| |||||||||||
Sbjct 660 TATGCGAGCTCGTCTGCCATGGGGATCTCCA---GC---------AGAGTTTCGATCACC 707
Query 774 ATCATCAGCAAGAGTGCAAGGGACACCCCTTCCTTATAGCGCTGGAAACTTTTCCTCATC 833
|||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 708 ATCATCAGCAGGAATGCAAGGGACACCCTTTCCTTATAGCGCTGGAAACTTTTCCTCATC 767
Query 834 CAAGCTGAAAAGGAAGTCCGGTTCTAATCAGTCATGGAATATTCAAGATGAAATTCGCAA 893
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 768 TAAGCTGAAAAGGAAGTCCGGTTCTAATCAATCATGGAATATTCAAGATGAAATTCGCAA 827
Query 894 AGTCAGAGCTAAAGCAACCGAGGAAATGCTTAAAAGTCCCAGTAGTGTAGCCTCTTTGGA 953
|||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 828 AGTCAGAGCTAAAGCAACAGAGGAAATGCTTAAAAGTCCTAGTAGCGTAGCCTCTTTGGA 887
Query 954 ACCTAAATACAGCCCCTATGTTTTAGCGACTGATATGCTCAAAGGAAATGCTTCGTCTTT 1013
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 ACCTAAATACAGCCCCAATGTTTTAGCGACTGATATGCTCAAAGGAAATGCTTCGTCTTT 947
Query 1014 GAATGCTGATGGAGCTGTACGGAATGAACAAAGCAGAGCTCTACCAAATTCAGCCATACC 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 GAATGCTGATGGAGCTGTACGGAATGAACAAAGCAGAGCTCTACCAAATTCAGCCATACC 1007
Query 1074 TACCTCTGAGCACAATCAGACTACGGAAGCTAATCAAGCCGTCAAAGAAACAGGAGTTTT 1133
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1008 TACCTCTGAACACAATCAGACTACGGAAGCTAATCAAGCCGTCGGAGAAACAGGAGTTTT 1067
Query 1134 ACACACTAGATCTCGTGGAGTTGGTTTGGAGGAGACATTTATCTCCACACAAGGAGTCAA 1193
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1068 ACACACTAGATCTCGTGGAGTTGGTTTGGACGAGACATTTATCTCCACACAAGGAGTCAA 1127
Query 1194 GCCATCTGAAGATACGAATACCGCTCCTCAAAGTGGAACTGCTGTAGATGACTTCAATGA 1253
||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1128 GCCGTCTGAAGATACGAATATCGCTCCTCAAAGTGGAACCGCTGTAGATGACTTCAATGA 1187
Query 1254 TCAAGATGGCGATTTTATCCAACCTA-CTTCTACTATCGGAAACACCACAAATGCTGTCT 1312
|||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||
Sbjct 1188 TCAAGATGGCGATTTTATCCAACCTAGCT-CTACTATCGGAATCACCACAAATGCTGTCT 1246
Query 1313 TGGCTCTTGGGGCAACTTTGGATCCTACTGGGAACTCTT---GCATCCCTAAAGATGTGT 1369
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1247 TGGCTCTTGGGGCAACTTTGGATCCAACTGGGAACTCTTCTTGCATCCCTAAAGATGTGT 1306
Query 1370 TTGAAACATCAAAAGAAGCTGATGAAATAGGCGCATCACGT-CATACTTCTAACGGTTTC 1428
||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1307 ATGAAACATCCAAAGAAGCTGATGAAATAGGCGCATCACGTGC-TACTTCTAACGGTTTC 1365
Query 1429 CCATCTTCATCACCTAGTTCACCAGCGGTTATGGAAGGTCAACCAAAACCCACACCACCA 1488
||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||
Sbjct 1366 CCATCTTCATCACCTAGTTCACCAGTGGT---GGAAGGTCAACCTAAACCCACACCACCA 1422
Query 1489 GAAGAAACCAAGGCTTCTCAGCCTATAGCTGAAATTCATGGTGATGATATGACAGTAGGG 1548
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1423 GAAGAAACCGAGGCTTCTCAGCCTGTAGCTGAAATTCATGGTGATGATATGACAGTAGGG 1482
Query 1549 AATGGCTCAGATGGTGCAATTAATAACGAAAGCAATGACAGCCACTCAAGTGCCTC---T 1605
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
Sbjct 1483 AATGGCTCAGATGGTGCAATTAATAACGAAAACAATGACAGCCACTCAAGTGGCTCGCAT 1542
Query 1606 AACAGTTCAAGCACCCATGAAGAAGAGTGGCTCCCAGGAGACCAGTCTCTACCTAACTCA 1665
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1543 AACAGTTCAAGCACTCATGAAGAAGAGTGGCTCCCAGGAGACCAGTCTCTACCGAACTCA 1602
Query 1666 AACTCAGCAAGTAGCAGCCCGGGAAATACCAAGGTCTTGGCATACAGCAGAAGAGGAAGA 1725
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1603 AACTCAGCAAGTAGCAGCCCGGGAACTACCAAGGTCTTGGCATACAGCAGAAGAGGAAGA 1662
Query 1726 GGCCGAGGTAGAGGAAGAGGCAGAGGAGGTCGAGGCAAAGGACGGGCCAAATAA 1779
|| || || |||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1663 GGGCGGGGGAGAGGAAGAGGCCGAGGAGGTCGAGGCAAAGGACGGGCGAAATAA 1716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79151529110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5