BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31440.1
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491593 jgi|Araly1|491593|fgenesh2_kg.7__1026__AT4G31440.1 996 0.0
Ahg932510 jgi|Araly1|932510|scaffold_400498.1 215 6e-55
> Ahg491593 jgi|Araly1|491593|fgenesh2_kg.7__1026__AT4G31440.1
Length=1185
Score = 996 bits (539), Expect = 0.0
Identities = 651/703 (93%), Gaps = 16/703 (2%)
Strand=Plus/Plus
Query 450 GGGTCCTTTTGCTTATTC-AAGACCTGGTCGATATCCTGATGAAAGAGACAGTGCATTTC 508
||||||||||||||| || |||| | ||||| ||| ||||||||||||||||||||||||
Sbjct 483 GGGTCCTTTTGCTTA-TCAAAGATCAGGTCGCTATGCTGATGAAAGAGACAGTGCATTTC 541
Query 509 TTTGCCCTGCTGAACAAAAG-GCGGTTTCCGGTAAAGATCAGGTTGCAGCTCCAATTAGC 567
|||||||||||||||||||| | |||||| ||||||| ||||||||||||||| |||||
Sbjct 542 TTTGCCCTGCTGAACAAAAGAG-GGTTTCGGGTAAAGGTCAGGTTGCAGCTCCTCTTAGC 600
Query 568 AGAGATGATGAAGCTC----A-AG-TA---AG---GATTCTTTCCACACCTCCTGTAATG 615
|| ||||||||||| | | || | || |||||||||||| ||||||||| |
Sbjct 601 AGGGATGATGAAGCCCAAGAAGAGCGAGGTAGTTTGATTCTTTCCACGCCTCCTGTAGTT 660
Query 616 GCACCTCTGGGGATTCCATTTTGTTCGGCTAGTGTCGGTGGGGACCGCAGAACAGTTCCA 675
|||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 661 GCACCTCTGGGGATTCCATTCTGCTCGGCTAGTGTCGGTGGGGATCGCAGAACAGTTCCA 720
Query 676 GTTTCGACCAGCGCAGCTGCTATCAGTTGCTATGACAGTGGTGGATTATCAGATACAGAG 735
||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 721 ATTTCGACCAGCGCAGATGCTATCAGTTGCTATGACAGTGGTGGATTGTCAGACACAGAG 780
Query 736 ATGCTGAGGAAGAGGATGGAGAATATTGCAGTAACACAGGGTCTTGGAGGGGTTTCAGCG 795
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 781 ATGCTGAGGAAGAGGATGGAGAATATTGCAGTAACACAGGGTCTTGGAGGGGTTTCCGCG 840
Query 796 GAGTGTTCTATTGTTTTAAATAACATGTTGGACTTGTACCTGAAGAAACTAATGAAATCA 855
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GAGTGTTCTACTGTTTTAAATAACATGTTGGACTTGTACCTGAAGAAACTAATGAAATCA 900
Query 856 TGCGTTGATTTGGCTGGAGCTCGGTCCATGAATGGAACGCCTGGAAAACACAGTTTAGAA 915
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 901 TGCGTTGATTTGGCTGGAGCTCGGTCCATGAATGGAACGCCTGGAAAACAAAGTTTAGAC 960
Query 916 AAACAGCAGAGCCGAGACGAGCTTGTAAATGGGGTGCGAACGAATAATAGTTTTCACATA 975
|||||||||||||||||||||||||||||||||||||| ||| || ||| || ||||||
Sbjct 961 AAACAGCAGAGCCGAGACGAGCTTGTAAATGGGGTGCGGGCGAGTACTAGCTTGCACATA 1020
Query 976 CAAACTAGCAACCAACCATCTGACATAACGCGAGAACAACATTCAGTGTCTTTGCTTGAT 1035
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1021 CAAACTAGCAACCAAGCATCTGACATAACGCAAGAACAACATTCAGTGTCTTTGCTTGAT 1080
Query 1036 TTTAGAGTTGCAATGGAGCTAAATCCACATCAACTTGGTGAAGACTGGCCATTGCTACGG 1095
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1081 TTTAGAGTTGCAATGGAGCTAAATCCGCATCAACTTGGTGAAGACTGGCCATTGCTACGG 1140
Query 1096 GAAAGAATTTCCATATCTTTATTCGAGGAACGAGAAGGGGTGT 1138
|||||||||||||||| || |||||||||||||||||||||||
Sbjct 1141 GAAAGAATTTCCATATGTTCATTCGAGGAACGAGAAGGGGTGT 1183
Score = 634 bits (343), Expect = 0.0
Identities = 414/448 (92%), Gaps = 5/448 (1%)
Strand=Plus/Plus
Query 1 ATGCAACGTCTTCAAGATCCCAGGATTGATCTAGCTGAGCTAAAAGTGCATATAGTGAAG 60
|||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||
Sbjct 1 ATGCAACGTCTTCAAGATCCCAGGGTTGATCTAGCTGACCTGAAAGTGCATATAGTGAAG 60
Query 61 AAGGTTGGGGTTGAAAGATCTACAAGGTATTTTTACTACTTGGGCAGGTTTCTGAGTCAG 120
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGATTGGGGTTGAAAGATCTAGAAGGTATTTTTACTACTTGGGCAGGTTTCTGAGTCAG 120
Query 121 AAGCTTACTAAGAGTGAGTTTGATAAGTCATGTTTCCGTCTTTTGGGGAGAGAGAATCTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGCTTACTAAGAGTGAGTTTGATAAGTCATGTTTCCGTCTTTTGGGGAGAGAGAATCTT 180
Query 181 TCTCTTCACAATAAGTTGATTCGTTCCATCTTGAGAAATGCATCTCTGGCTAAGTCCCCA 240
||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 181 TCTCTACACAACAAGTTGATTCGTTCCATCTTGAGAAATGCATCTCTAGCTAAATCCCCA 240
Query 241 CCATCAGTTCACCAATCCGGTCACCCTGGCAAATCTTTGGTGCTTGGGAAAGAAGATGGA 300
||| ||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 CCACCAGGTCACCAAACCGGTCACCCTGGCAAATCTTTGGTGCTTGGGAAAGAGGATGGA 300
Query 301 CCTGAAGAAAGCAGATCTCTAAACCCTGACCATATTAGGAATGATCTTGCTTTG-TCCAA 359
|||||| ||||| || |||||| |||||||||| ||||||||||| || |||| || ||
Sbjct 301 CCTGAACAAAGCGGACCTCTAATTCCTGACCATAGTAGGAATGATCCTG-TTTGCTCAAA 359
Query 360 TGGGGTGTTAGCCAAGGTTAGGCCTGGAACATGTGACGACAGGACAATCAGAGATAAGCC 419
|||| ||||| |||||||| || |||||| |||||| | |||||||||||||||||||
Sbjct 360 TGGGATGTTACCCAAGGTTCGGTTTGGAACGTGTGAC-A--GGACAATCAGAGATAAGCC 416
Query 420 TTGTCCGCTAGGGTCAAACGGAAAGGTT 447
|||||| |||||| ||||||||||||||
Sbjct 417 TTGTCCACTAGGGCCAAACGGAAAGGTT 444
> Ahg932510 jgi|Araly1|932510|scaffold_400498.1
Length=1271
Score = 215 bits (116), Expect = 6e-55
Identities = 210/255 (82%), Gaps = 8/255 (3%)
Strand=Plus/Plus
Query 1 ATGCAACG-TCTTCAAGATCCCAGGATTGATCTAG-CTGAGCTAAAAGTGCATATAGTGA 58
|||||||| || |||| ||| ||||||||| | | ||| | |||| |||||| ||||
Sbjct 21 ATGCAACGTTC-TCAATATCAGAGGATTGAT-TTGTGTGAATTGAAAGAGCATATTGTGA 78
Query 59 AGAAGGTTGGGGTTGAAAGATCTACAAGGTATTTTTACTACTTGGGCAGGTTTCTGAGTC 118
||||| |||| || |||||||| |||||||||||||| ||| | ||||||||||||||||
Sbjct 79 AGAAGATTGGTGTCGAAAGATCGACAAGGTATTTTTATTACCTAGGCAGGTTTCTGAGTC 138
Query 119 AGAAGCTTACTAAGAGTGAGTTTGATAAGTCATGTTTCCGTCTT-TTGGGGAGAGAGAAT 177
||||||||||||||||||| ||||||||| |||| || | || || ||||| ||||||
Sbjct 139 AGAAGCTTACTAAGAGTGAATTTGATAAGACATGCTTGAGG-TTGTTAGGGAGGGAGAAT 197
Query 178 CTTTCTCTT-CACAATAAGTTGATTCGTTCCATCTTGAGAAATGCATCTCTGGCTAAGTC 236
|| ||| || ||||| ||||||| ||||| |||||||| |||||| || | ||||||||
Sbjct 198 CTCTCT-TTACACAACCAGTTGATCCGTTCGATCTTGAGGAATGCAACTGTCGCTAAGTC 256
Query 237 CCCACCATCAGTTCA 251
|||||| ||| |||
Sbjct 257 ACCACCACCAGATCA 271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42507052455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5