BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31450.1
Length=1940
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944838 jgi|Araly1|944838|scaffold_701067.1 2281 0.0
> Ahg944838 jgi|Araly1|944838|scaffold_701067.1
Length=1544
Score = 2281 bits (1235), Expect = 0.0
Identities = 1451/1553 (93%), Gaps = 24/1553 (2%)
Strand=Plus/Plus
Query 94 TTGCATCCATTTAAAAAGTTCATGGATAGGTGGTCCAGTAAAAGAG-CCATGGAGGCGAG 152
||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||| |
Sbjct 1 TTGCATCCATTTAAAAAGTTCATGGATAGGTGGTCGGGTAAAAGAGCCCAT-GAGGCGCG 59
Query 153 ACCTGACTCTAAGAAGAAGGGTGGTGTTGTTTTTAGAGATAGATTTAACAGCAATAGTTG 212
|||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||
Sbjct 60 ACCTGACTCTAAGAAGGCTGGTGGTGTTGTTTTCAGAGATAGATTTAACAACAATAGTTG 119
Query 213 CAAGGTTCCTATTTGTAGTGATGAGAAAAAATCAATGAACTTTACTAGGTTTGTTGGCTC 272
||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||
Sbjct 120 CAAGGTTCCTATTTGTAGTGATGAGAAAAAAACGATGAACTTTACTCGGTTTGTTGGCTC 179
Query 273 TTCAGATAAGAAAGAGAAATCAGTGTTGTCTACATACCGCTCTTCGCCAAACGGGAAGGA 332
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 180 TTCAGATAAGAAAGAGAAGTCAGTCTTGTCTACATACCGCTCTTCGCCAAACGGGAAGGA 239
Query 333 AGTAATTGGAACTTCCTCTAAGATTTGTATCTCTAGCTCCTCTTCTGTGAAAAGTGGTGA 392
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
Sbjct 240 AGTAATTGGAACTTCCTCGAAGATTTGTGGCTCTAGCTCCTCTTCTGTGAAAAGTG---A 296
Query 393 GAAGCAACCGTTTTCTCAGATAGCCATTGATTCATCAGAGAGCAGCAGAGGTAGTGAAGA 452
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 297 GAAGCAACCGTTTTCTCAGATTGCCATGGATTCATCAGAGAGCAGCAGAGGTAGCGAAGA 356
Query 453 CGAGGTAGAGTCAGAAATCTTGCAAGTTCCTCTTGGAAGAGATAAAAGAAGAA--TGAAC 510
||||||||| ||||||||||||||||| ||||||||||||||||||||| || | |||
Sbjct 357 TGAGGTAGAGACAGAAATCTTGCAAGTTTCTCTTGGAAGAGATAAAAGAA-AAGCT-AAC 414
Query 511 AATAAACTTATTTATGGAAAAGTTATAACACCTGAAGCGGAATGCTCAAAGTTGCCATCA 570
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 415 AATAAACTTATTTATGGAAAAGTTATAACACCAGAAGCGGAATGCTCAAACTTGCCATCG 474
Query 571 AGCTCAAGAATCAAGAGAGGTTTTAGGCAGAGATTTGGGTTGAGCAAGCAAGAGTTTCAT 630
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 475 AGCTCAAGAATCAAGAGAGGTTTTAGGCAGAGGTTTGGGTTGAGCAAGCAAGAGTTTCAC 534
Query 631 CCTGGTCCATCTGGCCAGTCAACATCTGCTAACCGGGGATGCAGCCCGTTGTTGTCAGGT 690
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||| || |||
Sbjct 535 CCTGGTCCCTCTGGCCAGTCAACATCTGCCAACCGAGGATGCAGCCCGTTGTTATCCGGT 594
Query 691 GTCATTCCAAGTGGTTTTGGATTGGACAAAAGATTAAGTCGGAAGGCAGATACAATCAGT 750
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 595 GTCATTCCAAGTGGTTTTGGATTGGAGAAAAGATTAAGTCGGAAGGCAGATACAATCAAT 654
Query 751 AAGACAAAAGTTTACGGAGAAAGCAGTTCTAGCTCCTCAGCTAGGGGGAAGAATGTAACA 810
|||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 655 AAGAGGAAAGTTTATGGAGAAAGCAGTTCTAGCACCTCAGCTAGGGGGAAGAATGTAACA 714
Query 811 GAACCTCCACCAGTTGAAGTGAGACGTCGTAGTTTTAATCCGAGAGGTTCTGTTTCTGAT 870
||| | ||||| |||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 715 GAAAC---ACCAGCTGAAGTTAGACGTCGCAGTTTTAATCCGAGAGGTTCTGTTTCAGAT 771
Query 871 AGTAGACGGGCTAGACACTGCATTTTGGATGATGACAACGATGTTGCTTCAGTTGGGAGT 930
||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 772 AGTAGACAGGCTAGACACTGCATTTTGAATGATGACAACGATGTTGCTTCATTTGGGAGT 831
Query 931 CAGAGATTGGCAAATAGAAATAATAGTCGCATTAGA------------GGGAGTGGTAGA 978
|||||||||||| |||||| |||||||||||||||| ||||||||||||
Sbjct 832 CAGAGATTGGCAGATAGAAGTAATAGTCGCATTAGATTCTCAAACCCTGGGAGTGGTAGA 891
Query 979 GACGGTTTATCCTCTGTCACGGCAGCAGAGATGTCTCAGACTGAAACATCAAACAATCTC 1038
|| | ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 892 GAAGCTTTATCCTCTGTCACGGCAACAGAGATGTCTCCGACTGAAACATCAAACAATCTC 951
Query 1039 AATTCTCCTGTCTCTTTGGAGCTGTTCTCTGGTTTTCCAGAATTTGGCCTCTCTGGTTCC 1098
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 952 AATTCTCCTGTCTCTTTGGAGCTGTTCTCTGGTTTTCCAGAATTTGGCCCCCCTGGTTCC 1011
Query 1099 TTATTGAGTCATGACAGTTTTCGCAGTTATAATTTAGATGGGATCTCCGAGATTCTGCCA 1158
||||||||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||
Sbjct 1012 TTATTGAGTCAAGACAGTTTTCGCAGTTACAATTTAGATGGGATCTCGGAGATTTTGCCA 1071
Query 1159 GAACTTGATAGGATCGAACAAGATATCGAACTTAATTATGAGGATCTGCTTATCATGGAA 1218
|| ||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1072 GAGCTTGATAGGATTGAACAAGATATCGAGCTTAATTATGAGGAGCTGCTTATCATGGAG 1131
Query 1219 ACAGGTTTACTTCTCGGTGGACTAAGCTTCCATGACCAACACCGAGACATGAGGCTAGAC 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 ACAGGTTTACTTCTCGGTGGACTAAGCTTCCATGACCAACACCGAGACATGAGGCTAGAC 1191
Query 1279 ATCGATAACATGTCATATGAGGAACTATTAGCTCTAGAAGAGAGGATTGGTACAGTAAGC 1338
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1192 ATCGATAACATGTCATATGAGGAACTATTAGCTCTTGAAGAGAGGATTGGTACAGTAAGC 1251
Query 1339 ACTGCTTTGACAGAAGAAGCAATATCAAAGTGCTTGAAAACAAGTATCTATCAGATGAAA 1398
|||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1252 ACTGCTCTCACAGAAGAAGCAATATCAAAGTGCTTGAAAACAAGCATCTATCAGATGAAA 1311
Query 1399 CCTTTGAGTTATGGGTCTATCACCAAAAGTCCTAGTGATAACAAGGAAGATGCCAAATGC 1458
||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1312 CCTTTAACTTATGGGTCTATCACCAAAAGTCCTAGTGATCACAAGGAAGATGCCAAATGC 1371
Query 1459 AGCATCTGCCAGGAAGAATATACGATTGGAGATGAAGTTGGGAGGCTACACTGTGAGCAC 1518
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 1372 AGCATCTGCCAGGAAGAGTATACAATAGGAGATGAAGTTGGGAGGCTACACTGTGAGCAC 1431
Query 1519 ACATACCATGTGAAGTGTGTGCAAGAGTGGTTGCGGATAAAGAGTTGGTGCCCAATCTGC 1578
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1432 ACATACCATGTGAAGTGTGTGCAAGAGTGGTTGCGGATGAAGAGTTGGTGCCCAATCTGC 1491
Query 1579 AAAGCCACAGCCGAAACCTCCTCTAAATAACCGTCTTCTTCTTCTTCCTCGTT 1631
|||||||| || |||||||| |||||||||| |||||||||||||||||||||
Sbjct 1492 AAAGCCACTGCGGAAACCTCATCTAAATAACTGTCTTCTTCTTCTTCCTCGTT 1544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72904728930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5