BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31460.1
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491591 jgi|Araly1|491591|fgenesh2_kg.7__1024__AT4G31460.1 1517 0.0
> Ahg491591 jgi|Araly1|491591|fgenesh2_kg.7__1024__AT4G31460.1
Length=1074
Score = 1517 bits (821), Expect = 0.0
Identities = 988/1063 (93%), Gaps = 34/1063 (3%)
Strand=Plus/Plus
Query 46 CCGAAACCTCGACTCGT-GCCATCGTCAGTTTCATTTCTGCTTC-T-TCTCTCTCGTTGC 102
||||||| | ||||||| | |||||||||||||||| |||||| | |||||||||| ||
Sbjct 1 CCGAAACTTGGACTCGTGGTTATCGTCAGTTTCATTTTTGCTTCTTCTCTCTCTCGTGGC 60
Query 103 TTGACCATTTATGTGGTTTGGTTCACTTCAGGTCATACCAAGCACAGAGAAAAGCATTTG 162
| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TAGACCATATATGTGGTTTGGTTCACTTCAGGTCATACCAAGCACAGAGAAAAGCATTT- 119
Query 163 GGGAAGAGTAGGTTTTGCGATCTGTGATTTTCTG-AGGAGAAACGAAAATGGCGTTTAGA 221
| | ||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 120 --G--G-GTAGGTTTTGCGATCTGTGATTTTCGGAAGGAGAAACGAAAATGGCGTTTAGA 174
Query 222 GGGAAGGAGATGATGAAGAAGCTGGTAAAGAAAGTTGGAGCGGAGAATATCACGCCGGAG 281
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 175 GGGAAGGAGATGATGAAGAAGCTGGTGAAGAAAGTGGGAGCGGAGAATATCACGCCGGAG 234
Query 282 CTCAAGGAGAAGCTCAAGGCTTGTGTTCCTGATACCAAAGTCGTCATGGGCAGAGCCAAA 341
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 235 CTCAAGGAGAAGCTCAAGGCTTGTGTTCCCGATACCAAAGTCGTCATGGGCAGAGCCAAA 294
Query 342 CGCGGTCTCTACGCCGGCCGCCACATCCAGTACGGAAACCGTGTCAGTGAAGACGGTGGA 401
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 295 CGCGGTCTCTACGCCGGCCGCCATATCCAGTACGGCAACCGCGTCAGTGAAGACGGTGGA 354
Query 402 AACAAGTCAAGAAGATGTTGGAAACCGAATGTCCAGGAGAAGCGATTGTTCAGCTACATA 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 AACAAGTCAAGAAGATGTTGGAAACCGAATGTCCAGGAGAAGCGATTGTTCAGCTACATA 414
Query 462 TTCGACAGTCACATTAAAGTCAAAGTCACAACACACGCTCTTCGCTGCATCGACAAAGCA 521
|| ||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 415 TTTGACCGTCACATTAAAGTCAAAGTCACAACACATGCTCTCCGCTGCATCGACAAAGCA 474
Query 522 GGAGGAATAGACGAGTACCTGCTGAAAACACCATACCAAAAGATGGACACAGAGATGGGT 581
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 475 GGAGGAATAGACGAGTACCTGCTAAAAACACCATACCAAAAGATGGACACAGAGATGGGT 534
Query 582 CTTTACTGGAAAACCAAAGTAGAGGCAA-GATATGCAGAGCTGGGTCAAATGGAAGTAGC 640
|||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||
Sbjct 535 CTTTACTGGAAAACCAAAGTAGAG-CAAAGATATGCAGAGCTAGGTCAAATGGAAGTAGC 593
Query 641 CTTCTTCAATCCAGAGGATGAAGCCAAGTTGGAACAAGGATTCAAAGACTTGAATATAGC 700
|||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 594 CTTCTTCACTCCAGAGGATGAAGCCAAGTTCGAACAAGGTTTCAAAGACTTGAATATAGC 653
Query 701 TAAGAAAGATGCTCGTCGGGAAGCTAGAAGGACG-T-T-TCGAAAGAAAGGTGGAGGAAA 757
|||||||||||||||| ||||||||||||| | | | | |||||||||| |||| ||
Sbjct 654 TAAGAAAGATGCTCGTAGGGAAGCTAGAAGAAATATGTATGGAAAGAAAGGCGGAG-AAG 712
Query 758 C-AAAGGTGATGAAGAAGCTTCTATTGAAGGTGGTGGAGGGTCAGAGTCACACCAAGAAG 816
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 713 GGAAAGCTGATGAAGAAGCTTCTATTGAAGGTGG---AGGGTCAGAGTCACACCAAGAAG 769
Query 817 ATGATAATGGGTGGTTAGAAGCTAAAGCTTAGTGGCTGCTCTCTTTTCTTTT-GCTGAGT 875
||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 770 ATGATCATGGGTGGTTAGAAGCTAAAGCTTAGTG-CTGCTCTCTTTTCTTTTTGCTGAGT 828
Query 876 TTCTTCAACGTTTTTAGATTTTGGAAGATGTGAGAGGTATGTGAGGTTGTAGGTTATAGG 935
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 829 TTCTTCAACGTTTTTAGATTTTGGAAGATGTGAGATGTATGTGATGTTGTAGGTTATAGG 888
Query 936 TTCGATTCCTCCCTACGAATCCCATAACTCAGCGTTTTGACTTTGATCAATGTCGAAAAA 995
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 889 TTCGATTCCTCCCTACGAATCCCATAACTCAG-GTTTTGACTTTGATCAATGTTGAAAA- 946
Query 996 GTCTTGTAATAAATGGTTTACACCTCTTTGAAAT-C--T-T-TATTTACCATTTTTACAT 1050
|||||||||||||||||||||||||||||| ||| | | | ||||||||||||||||||
Sbjct 947 GTCTTGTAATAAATGGTTTACACCTCTTTGGAATTCGATCTCTATTTACCATTTTTACAT 1006
Query 1051 ACTT-G-TCAT--TT-TCTTTCGATTCCTCATCTCCAATGGTG 1088
|||| | | | || ||||||||| |||||||||||||||||
Sbjct 1007 ACTTAGCTTGTCCTTCTCTTTCGATACCTCATCTCCAATGGTG 1049
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42964527459
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5