BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31470.1
Length=558
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491590 jgi|Araly1|491590|fgenesh2_kg.7__1023__AT4G31470.1 828 0.0
> Ahg491590 jgi|Araly1|491590|fgenesh2_kg.7__1023__AT4G31470.1
Length=561
Score = 828 bits (448), Expect = 0.0
Identities = 525/562 (93%), Gaps = 5/562 (1%)
Strand=Plus/Plus
Query 1 ATGGAACAAAAAACTCTGATA-T--TCATCATCATTATCATAGTTATCAGCACTCCACTT 57
||||||| |||| || ||||| | ||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGAACCAAAATCTTTGATATTCGTCATCATCATTATCATAGTCATCAGCACTCCACTT 60
Query 58 CCTTCTCTCTCTTTTCAAATCCCATCAAACAGAACACCGACAACATCAACACTAATTTTT 117
|||||| ||||||||||| ||||||| |||| |||||| |||||||||||||||| || |
Sbjct 61 CCTTCTGTCTCTTTTCAATTCCCATCCAACAAAACACCAACAACATCAACACTAACTTCT 120
Query 118 TCTCAAGACAAAGCTCTAGCCCGCAACACCATTCAGCAGCAGTTTCTCCGACCACACAAC 177
|||||| ||||| | |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 TCTCAATACAAAACCCTAGCCCGCAACACAATTCAGCAGCAGTTTCTCCGACCACACAAC 180
Query 178 ATCTTACGAGCCAAGCTTCGTCTCCCTCCTCTCAAATGGAGCAATAGCCTCGCCCTCTAT 237
| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 181 ACCTTACGAGCCAAGCTTCGTCTCCCTCCTCTTAAATGGAGCAATAGTCTCGCCCTCTAC 240
Query 238 GCGAGCCGGTGGG-CCAGAACCCGCCGTGGAGATTGCAAACTTATCCACTCCGGGGGACC 296
||||||||||||| ||| ||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 241 GCGAGCCGGTGGGCCCA-AACCCGCGGTGGAGATTGCAAACTTATTCACTCCGGGGGACC 299
Query 297 TTACGGGGAGAATCTCTTCTGGGGAAGCGGAAAAGGTTGGACTCCACGGGATGCGGTGGC 356
| ||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 300 TCACGGGGAGAATTTCTTCTGGGGAAGCGGAAAAGGGTGGACTCCACGGGACGCGGTGGC 359
Query 357 TGCATGGGCCTCGGAGATGAAATACTATGACCGGAGGACTTCCCACTGCAAGGCGAATGG 416
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 360 TGCATGGGCATCGGAGATGAAATACTATGACCGGAGGACTTACCACTGCAAGGCGAATGG 419
Query 417 GGATTGTTTGCATTACACGCAACTTGTATGGAAGAAGAGTTCGAGGATTGGGTGTGCAAT 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGATTGTTTGCATTACACGCAACTTGTATGGAAGAAGAGTTCGAGGATTGGGTGTGCAAT 479
Query 477 CAGTTTTTGCAAGACCGGTGACACATTTATTATTTGTAACTATGATCCTCCTGGTAACAT 536
|||||||||||||||||||| |||||||||| |||| |||||||||||||||||||| ||
Sbjct 480 CAGTTTTTGCAAGACCGGTGCCACATTTATTTTTTGCAACTATGATCCTCCTGGTAATAT 539
Query 537 TGTTGGACAACCACCCTTTTGA 558
||||||||| ||||||||||||
Sbjct 540 TGTTGGACAGCCACCCTTTTGA 561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20375084526
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5