BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31480.1
Length=3423
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491589 jgi|Araly1|491589|fgenesh2_kg.7__1022__AT4G31490.1 2617 0.0
Ahg950384 jgi|Araly1|950384|scaffold_802271.1 806 0.0
> Ahg491589 jgi|Araly1|491589|fgenesh2_kg.7__1022__AT4G31490.1
Length=3265
Score = 2617 bits (1417), Expect = 0.0
Identities = 1568/1643 (95%), Gaps = 2/1643 (0%)
Strand=Plus/Plus
Query 162 CTCCCTGGATCTCGTACCTTTGAGCACCGGAGAAGATGGACAAATCTAGTACCATGCTTG 221
|||| |||||||| |||| |||||||||||| ||||||||||||||||||||| ||||||
Sbjct 73 CTCCGTGGATCTCCTACC-TTGAGCACCGGAAAAGATGGACAAATCTAGTACCTTGCTTG 131
Query 222 TTCACTATGACAAAGGGACTCCAGCAGTTGCTAATGAGATTAAAGAAGCTCTCGAAGGAA 281
| |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 132 TGCACTATGACAAAGGGACTCCTGCAGTGGCCAATGAGATTAAAGAAGCTCTCGAAGGAA 191
Query 282 ATGATGTTGAAGCTAAAGTTGATGCCATGAAGAAGGCAATTATGCTTTTGCTGAATGGTG 341
||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||
Sbjct 192 ATGATGTTGAAGCTAAAATTGATGCCATGAAGAAGGCGGTTATGCTTTTGTTGAATGGTG 251
Query 342 AAACCATTCCTCAGCTTTTCATAACCATTATAAGATATGTGCTACCTTCTGAGGACCACA 401
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 252 AAACCATTCCTCAGCTTTTCATAACCATTATAAGATATGTGCTGCCTTCTGAGGACCACA 311
Query 402 CAATCCAAAAGCTTCTGTTGCTGTACCTGGAGCTGATTGAAAAGACTGATTCTAAGGGGA 461
|||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 312 CAATCCAAAAGCTTCTGTTGCTATACCTGGAGCTGATTGAAAAAACCGATTCTAAGGGGA 371
Query 462 AGGTGTTACCTGAAATGATTTTGATATGCCAGAATCTTCGTAATAACCTTCAGCATCCTA 521
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct 372 AGGTGTTACCTGAAATGATTTTGATATGCCAGAATCTTCGGAATAACCTTCAGCATTCGA 431
Query 522 ATGAGTACATCCGTGGAGTGACACTGAGGTTTCTCTGCCGGATGAAGGAGACTGAAATTG 581
|||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||| |
Sbjct 432 ATGAGTACATCCGTGGTGTGACACTCAGGTTTCTCTGCCGGTTGAAGGAGACTGAAATAG 491
Query 582 TGGAGCCTTTAACTCCATCAGTGTTACAAAATCTGGAGCATCGCCATCCATTTGTTCGCA 641
| || || || |||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 492 TAGAACCGTTGACTCCATCAGTGTTGCAAAATCTGGAGCATCGCCATCCGTTTGTTCGTA 551
Query 642 GGAATGCCATTCTGGCCATCATGTCGATATATAAGCTTCCACAAGGCGACCAACTCTTTG 701
||||||| || || || |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 552 GGAATGCAATCCTAGCTATCATGTCAATATATAAGCTTCCACAAGGAGACCAACTCTTTG 611
Query 702 TGGATGCGCCTGAAATGATCGAGAAAGTTCTATCAACCGAACAAGATCCTTCTGCCAAGA 761
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 612 TGGATGCACCTGAAATGATCGAGAAAGTTCTATCAACAGAACAAGATCCGTCTGCCAAGA 671
Query 762 GAAATGCATTTCTAATGCTCTTTACCTGTGCTGAAGAACGTGCAGTGAATTATCTTCTGA 821
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 672 GAAATGCATTTCTAATGCTCTTTACCTGTGCCGAAGAACGAGCAGTGAATTATCTTCTGA 731
Query 822 GCAATGTTGACAAGGTTTCAGACTGGAATGAATCACTTCAGATGGTGGTGCTGGAGTTGA 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 GCAATGTTGACAAGGTTTCAGACTGGAATGAATCACTTCAGATGGTGGTGCTGGAGTTGA 791
Query 882 TTCGAAGTGTGTGTAAGACTAAACCAGCAGAGAAGGGGAAATATATTAAGATTATTATTT 941
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 792 TTCGAAGTGTGTGTAAGACTAAACCAACAGAGAAGGGGAAATATATTAAGATTATTATTT 851
Query 942 CTCTGTTAAGTGCTACTTCTTCTGCAGTTATCTATGAATGTGCTGGGACACTTGTTTCTC 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 CTCTGTTAAGTGCTACTTCTTCTGCAGTTATCTATGAATGTGCTGGGACACTTGTTTCTC 911
Query 1002 TCTCATCTGCCCCTACTGCGATTCGGGCTGCTGCCAACACCTACTGCCAACTTCTTCTTT 1061
|||| |||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 912 TCTCTTCTGCCCCGACTGCTATTAGGGCTGCTGCCAACACCTACTGCCAACTTCTTCTTT 971
Query 1062 CTCAGAGTGACAACAATGTGAAGCTTATTTTACTCGATCGGTTGTATGAGCTTAAGACAT 1121
||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 972 CTCAGAGTGACAACAATGTGAAGCTAATATTGCTCGATCGGTTGTATGAGCTTAAGACAT 1031
Query 1122 TGCACAGAGATATCATGGTTGAGTTGATAATAGATGTGCTCAGAGCACTCTCAAGCCCAA 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 TGCACAGAGATATCATGGTTGAGTTGATAATAGATGTGCTCAGAGCACTCTCAAGCCCAA 1091
Query 1182 ACCTTGATATCCGCAGGAAGACGCTTGACATTTCCCTTGACTTGATTACCCATCATAATA 1241
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1092 ACCTTGATATCCGCAGGAAGACACTTGACATTGCCCTTGACTTGATTACCCATCATAATA 1151
Query 1242 TCAATGAGGTCGTTCAAATGTTGAAGAAAGAAGTTGTGAAGACACAGAGTGGAGAACTTG 1301
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 TTAATGAGGTCGTTCAAATGTTGAAGAAAGAAGTTGTGAAGACACAGAGTGGAGAACTTG 1211
Query 1302 AGAAGAATGGGGAGTACAGACAAATGCTTATTCAAGCCATCCACGCTTGTGCAGTGAAGT 1361
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1212 AGAAGAATGGGGAGTACAGACAAATGCTTATTCAAGCAATCCATGCTTGTGCAGTGAAGT 1271
Query 1362 TCCCCGAAGTTGCAAGCACAGTGGTCCACCTTCTGATGGACTTCTTGGGAGATAGCAATG 1421
|||||||||||||||| ||||| ||||| ||||| ||||| |||||||||||||||||||
Sbjct 1272 TCCCCGAAGTTGCAAGTACAGTAGTCCATCTTCTAATGGATTTCTTGGGAGATAGCAATG 1331
Query 1422 TGGCTTCAGCTCTTGACGTGGTTGTTTTTGTTAGAGAGATAATAGAAACAAATCCCAAGT 1481
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1332 TGGCTTCAGCTCTTGACGTGGTTGTTTTTGTTAGAGAGATAATAGAAACAAATCCGAAGT 1391
Query 1482 TAAGAGTTTCAATCATCACAAGGTTATTGGACACGTTCTATCAGATCCGAGCAGGAAAGG 1541
|||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1392 TAAGAGTTTCAATCATAACCAGGTTGTTGGACACGTTCTATCAGATCCGCGCAGGAAAGG 1451
Query 1542 TCTGCCCTTGTGCCCTTTGGATAATTGGGGAGTATTGCCTATCACTTTCGGAAGTTGAGA 1601
||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1452 TCTGCCCTTGTGCACTTTGGATTATTGGGGAGTATTGCCTATCACTTTCAGAAGTTGAGA 1511
Query 1602 GTGGCATTTCAACTATCACGCAATGCCTTGGCGAATTACCATTTTACTCTGTTTCTGAGG 1661
||||||||||||| || | |||||||||||||| |||||||||||||||||||||||||
Sbjct 1512 GTGGCATTTCAACCATTAAACAATGCCTTGGCGATTTACCATTTTACTCTGTTTCTGAGG 1571
Query 1662 AGTCTGAGCCAACTGAGACATCAAAGAAGATTCAGCCTACCTCTTCTGCCATGGTGTCCT 1721
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1572 AGTCTGAGCCAACTGAGACATCGAAGAAGATTCAGCCTACCTCTTCTGCCATGGTGTCCT 1631
Query 1722 CTAGAAAGCCAGTGATTCTTGCTGATGGAACTTATGCTACCCAAAGCGCAGCCTCTGAAA 1781
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1632 CTAGAAAGCCAGTGATTCTTGCTGATGGAACTTATGCTACCCAAAGCGCAGCCTCTGAA- 1690
Query 1782 CCACATTCTCCTCACCTACAGTT 1804
|||||||||||||||||||||||
Sbjct 1691 CCACATTCTCCTCACCTACAGTT 1713
Score = 2266 bits (1227), Expect = 0.0
Identities = 1468/1578 (93%), Gaps = 42/1578 (3%)
Strand=Plus/Plus
Query 1837 AGCACTGCTACTAACTGGTGATTTTTTCCTCGGAGCAGTGGTTGCTTGCACGTTGACCAA 1896
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1714 AGCACTGCTTCTAACTGGTGATTTTTTCCTTGGAGCAGTGGTTGCTTGCACGTTGACTAA 1773
Query 1897 ACTTGTTCTTAGGTTAGAAGAGGTTCAGTCTTCTAAAACTGAAGTAAATAAGACAGTCAC 1956
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1774 ACTTGTTCTTAGGTTGGAAGAGGTTCAGTCTTCTAAAACTGAAGTAAACAAGACAGTCAC 1833
Query 1957 ACAGGCTTTGTTGATCATGGTTTCTATGTTGCAACTTGGGCAATCTCCTGTTTCTCCACA 2016
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1834 ACAGGCTTTGCTGATCATGGTTTCTATGTTGCAACTTGGGCAATCTCCTGTTTCTCCACA 1893
Query 2017 CCCTATTGATAATGATTCGTATGAGAGGATTGTGTTGTGCATAAAATTGCTTTGCCATAG 2076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1894 CCCTATTGATAATGATTCGTATGAGAGGATTGTGTTGTGCATAAAATTGCTTTGCCATAG 1953
Query 2077 GAATGATGAGATGAAAAAGATATGGTTAGAATCCTGCCGCCAGAGTTTTGTCAAGATGAT 2136
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1954 GAATGATGAGATGAAAAAGATATGGTTGGAATACTGCCGCCAGAGTTTTGTCAAGATGAT 2013
Query 2137 TTCTGAAAAACAGCTTAGAGAGATGGAGGAACTGAAGGCGAAGACCCAAACAACGCATGC 2196
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 2014 TTCTGAAAAACAGCTTAGAGAGATGGAGGAACTAAAGGCAAAGACCCAAACAACTCATGC 2073
Query 2197 TCAACCTGATGATCTAATTGACTTCTTCCATCTAAAGAGTCGGAAGGGAATGAGTCAACT 2256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2074 TCAACCTGATGATCTAATTGACTTCTTCCATCTAAAGAGTCGGAAGGGAATGAGTCAACT 2133
Query 2257 TGAGTTGGAAGACCAAGTACAAGATGACCTAAAGCGTGCAACTGGAGAATTCACCAAGGA 2316
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2134 TGAGTTGGAAGACCAGGTACAAGATGACCTAAAGCGTGCAACTGGAGAATTCACCAAGGA 2193
Query 2317 CGAGAACGATGCTAACAAACTTAACCGCATTCTTCAACTCACAGGATTCAGTGACCCAGT 2376
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 2194 CGAGAACGATGCTAACAAACTTAACCGCATTCTTCAGCTCACGGGATTCAGTGACCCAGT 2253
Query 2377 CTATGCTGAAGCATATGTGACGGTACACCATTATGATATTGCTCTTGAAGTTACAGTAAT 2436
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 2254 CTATGCTGAAGCATATGTGACGGTACACCATTATGATATTGCGCTCGAAGTTACAGTAAT 2313
Query 2437 CAACCGAACCAAGGAAACCCTTCAGAA-CTTGTGCTTGGAGTTAGCAACCATGGGTGATC 2495
|||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 2314 CAACCGTACCAAGGAAACCCTTCAGAATCT-GTGCTTGGAGTTAGCAACCATGGGTGATC 2372
Query 2496 TCAAACTTGTTGAGCGTCCTCAGAACTACAGTCTGGCACCTGAAAGAAGCATGCAGATTA 2555
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 2373 TCAAACTTGTTGAGCGTCCTCAGAACTATAGTCTGGCACCTGAAAGAAGCATGCAGATAA 2432
Query 2556 AAGCAAACATCAAGGTGTCGTCCACAGAGACGGGAGTCATATTCGGGAACATCGTCTATG 2615
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2433 AAGCAAACATCAAGGTCTCGTCCACAGAGACGGGAGTCATATTCGGGAACATCGTCTATG 2492
Query 2616 AGACATCAAATGTAATGGAGCGAAACGTCGTTGTTCTTAATGACATACACATTGATATCA 2675
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 2493 AGACATCAAATGTAATGGAGCGAAACGTCGTGGTTCTTAACGACATACACATTGATATCA 2552
Query 2676 TGGACTATATCTCCCCTGCTGTGTGTTCAGAGGTTGCTTTCAGAACTATGTGGGCAGAGT 2735
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2553 TGGACTATATCTCCCCTGCTGTGTGCTCAGAGGTTGCTTTCAGAACTATGTGGGCAGAGT 2612
Query 2736 TCGAATGGGAAAACAAGGTTGCTGTGAACACCACAATACAAAACGAAAGAGAATTCCTCG 2795
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2613 TTGAATGGGAAAACAAGGTTGCTGTGAACACCACAATTCAAAACGAAAGAGAATTCCTCG 2672
Query 2796 ACCACATTATCAAATCTACAAACATGAAATGTCTCACTGCTCCATCCGCAATAGAAGGCG 2855
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 2673 ACCACATTATCAAATCCACAAACATGAAATGTCTCACTGCCCCATCCGCAATAGAAGGTG 2732
Query 2856 AATGTGGATTCCTTGCAGCAAACTTATACGCAAAAAGTGTATTTGGTGAGGATGCTCTTG 2915
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 2733 AATGTGGATTCCTTGCAGCAAACTTATATGCAAAAAGTGTGTTTGGTGAAGATGCTCTTG 2792
Query 2916 TGAATGTGAGTATTGAGAAGCAAACGGATGGAGCATTGAGTGGTTACATAAGGATAAGGA 2975
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 2793 TGAATGTGAGTATTGAGAAGCAAACCGATGGAGCATTGAGTGGCTACATAAGGATAAGGA 2852
Query 2976 GCAAGACGCAAGGGATTGCCCTAAGTCTTGGGGACAAAATCACCCTCAAACAAAAGGGTA 3035
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2853 GCAAGACGCAAGGGATTGCTCTAAGTCTTGGGGACAAAATCACCCTCAAACAAAAGGGTA 2912
Query 3036 GTAGCTGAG-TACCATACCGATGATTTCTCACAGTGGCGTGCAAAGGTAACAGGTTTAGA 3094
||||||||| | | | || || ||||||||||| |||||||||||||||
Sbjct 2913 GTAGCTGAGGTT---T---G--GA------ACGGTGGCGTGCAA-GGTAACAGGTTTAGA 2957
Query 3095 CTACGTACGTTTCTCT-T-GAGCAATTATC-GTTGGTTGAATCTGCTTATTATATGGAGG 3151
|||||||||||||||| | |||||||| | |||||||||||||| ||| || | ||||
Sbjct 2958 CTACGTACGTTTCTCTCTTGAGCAATTTTTTGTTGGTTGAATCTGTTTACTACAAGGAGA 3017
Query 3152 GAGGAGGCGTTCAAGGGTATATGTAAAAAG-AGT---AATTGGCTATCGTTCTTACTTAA 3207
||||||||||| ||| ||||||||| || | | |||| | |||| ||||| |||||
Sbjct 3018 GAGGAGGCGTTTGAGG--ATATGTAAAGAGTAATTTCAATTTGTTATCATTCTTCCTTAA 3075
Query 3208 CCGGTATATTTTCTGGTATGGTACCGATGGATTTCTTCATCTCATATGGCAGTGTGTTTT 3267
|| |||||||||| ||||||| ||||||||||| |||| |||||| ||| |||| ||||
Sbjct 3076 CCAGTATATTTTCCGGTATGGCACCGATGGATT-CTTC--CTCATACGGCTGTGTTTTTT 3132
Query 3268 TTACTGTACTAGACGATTTTGTTTTATTTGTAATGCTTT-TTCTTCT---ATAATGTCGT 3323
|||| |||||||||||||||||||||| |||||||||| ||||||| |||| |||||
Sbjct 3133 TTACACTACTAGACGATTTTGTTTTATTGGTAATGCTTTCTTCTTCTTCTATAAAGTCGT 3192
Query 3324 TTGTTGAGGACTTTAAACCGTGAACTTTAT-GATAT-T-GTAGATTTCAAAGCTACATTT 3380
|||||||||| |||| |||||| |||| | || || | |||||||||||||| | |
Sbjct 3193 TTGTTGAGGAGATTAAGCCGTGA-CTTTCTTGAAATATAGTAGATTTCAAAGC-A--TG- 3247
Query 3381 GGTTTGCTCCATTTTAGA 3398
||||||||||| ||||||
Sbjct 3248 GGTTTGCTCCAATTTAGA 3265
Score = 86.1 bits (46), Expect = 2e-15
Identities = 63/70 (90%), Gaps = 6/70 (9%)
Strand=Plus/Plus
Query 67 ATCTCTCACTTCCTTGGTGCGAGTG-TTTTGTTTTCCGAGATCCAAAATCTTCTCTTGGA 125
||||||||| | || ||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ATCTCTCAC-T--TT-GTGGGAGTGTTTTTGTTTTCCGAGATCCAAAATCTTCTCTTGGA 56
Query 126 TCCAAA-GCT 134
|||||| |||
Sbjct 57 TCCAAAAGCT 66
> Ahg950384 jgi|Araly1|950384|scaffold_802271.1
Length=2806
Score = 806 bits (436), Expect = 0.0
Identities = 813/992 (82%), Gaps = 38/992 (4%)
Strand=Plus/Plus
Query 194 AAGATGGACAAATCTA-GTAC-CATGCTTGTTCACTATGACAAAGGGACTCCAGCAGTTG 251
|||||||| ||||| | |||| | |||| || ||||||||||||| ||||| ||| |||
Sbjct 18 AAGATGGAGAAATC-ATGTACGC-TGCTAATTTACTATGACAAAGGAACTCCTGCAATTG 75
Query 252 CTAATGAGATTAAAGAAGCTCTCGAAGGAAATGATGT-TGAAGCTAAAGTTGATGCCATG 310
| || ||||| ||||||||||| ||||| || ||||| | || ||| | ||||| ||
Sbjct 76 CGAACGAGATCAAAGAAGCTCTAGAAGGGAACGATGTAT-CTGCGAAAATCGATGCGTTG 134
Query 311 AAGAAGGCAATTATGCTTTTGCTGAATGGTGAAAC-CATTCCTCAGCTTTTCATAACCAT 369
||||| ||||| ||||||||||| ||||||||||| | | || ||||||||||| || ||
Sbjct 135 AAGAACGCAATCATGCTTTTGCTTAATGGTGAAACTC-TGCCACAGCTTTTCATCACTAT 193
Query 370 TATAAGATATGTGCT-ACCTTCTGAGGACCACACAATCCAAAAGCTTCTGTTGCTGTACC 428
||| |||||||| | | | |||| ||||||||| |||| ||||| ||| |||| | ||
Sbjct 194 TATCAGATATGTTTTGA-CGACTGAAGACCACACAGTCCAGAAGCTACTGCTGCTTTTCC 252
Query 429 TGGAG-CTGATTGA-AAAGACTGATTCTAAGGGGAAGGTGTTACCTGAAATGATTTTGAT 486
||||| | || || ||| || |||||||| ||||||||||||||||| ||||| |||||
Sbjct 253 TGGAGAC-AATCGAGAAA-ACCGATTCTAAAGGGAAGGTGTTACCTGAGATGATATTGAT 310
Query 487 ATGCCAGAATCTTCGTAATAACCTTCAGCATCCTAATGAGTACATCCGTGGAGTGACAC- 545
||| |||||||| | || |||||||||||||| || ||||||||||||||||| || |
Sbjct 311 ATGTCAGAATCTGAGGAACAACCTTCAGCATCCGAACGAGTACATCCGTGGAGTTAC-CT 369
Query 546 TGAGGTTTCTCT-GCCGGA-TGAAG-GAGACTGAAATTGTGGAGCCTTTAACTCCATCAG 602
|| |||| || | ||| || || || ||||||||| || |||||||| | | ||| || |
Sbjct 370 TGCGGTTCCT-TAGCC-GATTG-AGAGAGACTGAAGTTATGGAGCCTCTGATTCCGTCTG 426
Query 603 TGTTACAAAATCTGGAGCATCGCCATCCATTTGTTCGCAGGAATGCCATTCTGGCCATCA 662
|||| || |||||||||||||||||||| ||||| || |||||||| ||| |||| || |
Sbjct 427 TGTTGCAGAATCTGGAGCATCGCCATCCGTTTGTCCGTAGGAATGCGATTTTGGCTATTA 486
Query 663 TGTCGATATATAAGCTTCCACAAGGCGACCAACTCTTTG-TGGATGCGCCTGAAATGATC 721
||||||| |||||||| |||||||| ||||| ||| ||| | ||||| ||||||| |||
Sbjct 487 TGTCGATTTATAAGCTCCCACAAGGTGACCAGCTC-TTGATAGATGCACCTGAAACGATT 545
Query 722 GAGAAAGTTCTATCAACCGAACAAGATCCTTCTGCCAAGAGAAATGCATTTCTAATGCTC 781
||||||||||| | |||||||| ||||| ||||| || ||||| || ||||| ||||||
Sbjct 546 GAGAAAGTTCTGGCTACCGAACAGGATCCCTCTGCTAAAAGAAACGCGTTTCTTATGCTC 605
Query 782 TTTACCTGTGCTGAAGAACGTGCAGTGAATTATCTTCTGAGC-AATGTTGACAAGGTTTC 840
|| | || | | |||| || || || || |||||||||| | |||||||| | ||||||
Sbjct 606 TTCAATTGCGATCAAGACCGAGCTGTAAACTATCTTCTGA-CTAATGTTGATAGGGTTTC 664
Query 841 AGACTGGAATGAATCACTTCAGATGGTGGTGCTGGAGTTGATTC--GAAGTGTGTGTAAG 898
|| |||||||||| |||||||||||||| ||||| || | || |||| || |||| |
Sbjct 665 TGAGTGGAATGAATTGCTTCAGATGGTGGTTCTGGAATT-AATCAAGAAG-GTTTGTAGG 722
Query 899 ACTAAACCAGCAGAGAAGGGGAAATATATTAAGATTATTATTTCTCTGTTAAGTGCTACT 958
|| |||||| ||||||||||||| ||||||||||||||||| ||||||||| ||| ||
Sbjct 723 ACCAAACCATCAGAGAAGGGGAAGTATATTAAGATTATTATAGCTCTGTTAAATGCGCCT 782
Query 959 TCTTCTGCAGTTATC-TATGAATGTGCTGGGACACTTGTTTCTCTCTCATCTGC-CCCTA 1016
|| |||||||||| | ||||||||||| ||||||||||||||||| |||||||| ||| |
Sbjct 783 TCATCTGCAGTTA-CTTATGAATGTGCCGGGACACTTGTTTCTCTATCATCTGCGCCC-A 840
Query 1017 CTGCGATTCGGGCTGCTGCCAACACCTACTGCCAACTTCTTCTTTCTCAGAGTGACAACA 1076
| || ||| | || |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 841 CCGCTATTAGAGCAGCTGCCAACACCTACTGCCAGCTTCTTCTTTCTCAGAGTGACAACA 900
Query 1077 ATGTGAAGCTTATTTTACTCGATCGGTTGTATGAGCTTAA-GACAT-TGCACAGAGATAT 1134
|||||||||| ||| | || ||| ||||| ||||||| || | | | | |||||||| ||
Sbjct 901 ATGTGAAGCTAATTGTGCTTGATAGGTTGAATGAGCTCAAAGCC-TCT-CACAGAGAGAT 958
Query 1135 CATGGTTGAGTTGATAATAGATGTGCTCAGAG 1166
|||||||||| |||| || |||||||| ||||
Sbjct 959 CATGGTTGAGATGATCATGGATGTGCTAAGAG 990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129243517908
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5