BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31490.1
Length=3306
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491589 jgi|Araly1|491589|fgenesh2_kg.7__1022__AT4G31490.1 2691 0.0
Ahg950384 jgi|Araly1|950384|scaffold_802271.1 771 0.0
> Ahg491589 jgi|Araly1|491589|fgenesh2_kg.7__1022__AT4G31490.1
Length=3265
Score = 2691 bits (1457), Expect = 0.0
Identities = 1629/1714 (95%), Gaps = 3/1714 (0%)
Strand=Plus/Plus
Query 15 ATCTCTCACTTTGTGCGAGTGttttt-ttttCCGAGATCCAAAATCTTCTAACGGATCC- 72
||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1 ATCTCTCACTTTGTGGGAGTGTTTTTGTTTTCCGAGATCCAAAATCTTCTCTTGGATCCA 60
Query 73 AAAGCTTTGTTACTCCGTGGATCTCCTACCTTGAGCACCTGAAAAGATGGACAAATCTAG 132
||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 AAAGCTTCGTAACTCCGTGGATCTCCTACCTTGAGCACCGGAAAAGATGGACAAATCTAG 120
Query 133 TACCATGCTTGTTCACTATGACAAAGGGACTCCAGCAGTTGCTAATGAGATTAAAGAAGC 192
|||| ||||||| |||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 121 TACCTTGCTTGTGCACTATGACAAAGGGACTCCTGCAGTGGCCAATGAGATTAAAGAAGC 180
Query 193 TCTCGAAGGAAATGATGTTGAAGCTAAAGTTGATGCCATGAAGAAGGCAATTATGCTTTT 252
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 181 TCTCGAAGGAAATGATGTTGAAGCTAAAATTGATGCCATGAAGAAGGCGGTTATGCTTTT 240
Query 253 GCTGAATGGTGAAACCATTCCTCAGCTTTTCATTACCATTATAAGATATGTGCTGCCTTC 312
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 GTTGAATGGTGAAACCATTCCTCAGCTTTTCATAACCATTATAAGATATGTGCTGCCTTC 300
Query 313 TGAAGACCACACCATCCAAAAGCTTCTGTTGCTGTACCTGGAGCTGATTGAAAAGACAGA 372
||| |||||||| |||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 301 TGAGGACCACACAATCCAAAAGCTTCTGTTGCTATACCTGGAGCTGATTGAAAAAACCGA 360
Query 373 TTCGAAGGGGAAGGTGTTGCCTGAAATGATTTTGATATGCCAGAATCTTCGTAATAACCT 432
||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 361 TTCTAAGGGGAAGGTGTTACCTGAAATGATTTTGATATGCCAGAATCTTCGGAATAACCT 420
Query 433 TCAGCATCCGAATGAGTACATCCGTGGAGTGACACTGAGGTTTCTCTGTCGGATGAAGGA 492
||||||| ||||||||||||||||||| |||||||| ||||||||||| ||| |||||||
Sbjct 421 TCAGCATTCGAATGAGTACATCCGTGGTGTGACACTCAGGTTTCTCTGCCGGTTGAAGGA 480
Query 493 GACTGAAATAGTGGAACCTTTGACTCCATCAGTGTTACAAAATCTGGAGCATCGCCATCC 552
|||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 GACTGAAATAGTAGAACCGTTGACTCCATCAGTGTTGCAAAATCTGGAGCATCGCCATCC 540
Query 553 ATTTGTTCGCAGGAATGCAATTCTGGCAATCATGTCGATATATAAACTTCCACATGGCGA 612
|||||||| ||||||||||| || || |||||||| |||||||| |||||||| || ||
Sbjct 541 GTTTGTTCGTAGGAATGCAATCCTAGCTATCATGTCAATATATAAGCTTCCACAAGGAGA 600
Query 613 CCAACTCTTCGTGGATGCACCTGAAATGATCGAGAAAGTTCTATCAACAGAACAAGATCC 672
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CCAACTCTTTGTGGATGCACCTGAAATGATCGAGAAAGTTCTATCAACAGAACAAGATCC 660
Query 673 TTCTGCCAAGAGAAATGCATTTCTAATGCTCTTTACCTGTGCCGAAGAACGTGCAGTGAA 732
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 661 GTCTGCCAAGAGAAATGCATTTCTAATGCTCTTTACCTGTGCCGAAGAACGAGCAGTGAA 720
Query 733 TTATCTTCTGAGCAATGTTGACAAGGTTTCAGACTGGAATGAATCACTTCAGATGGTGGT 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTATCTTCTGAGCAATGTTGACAAGGTTTCAGACTGGAATGAATCACTTCAGATGGTGGT 780
Query 793 GCTGGAGCTGATTCGAAGTGTGTGTAAGACTAAACCAGCGGAGAAGGGAAAATATATTAA 852
||||||| ||||||||||||||||||||||||||||| | |||||||| |||||||||||
Sbjct 781 GCTGGAGTTGATTCGAAGTGTGTGTAAGACTAAACCAACAGAGAAGGGGAAATATATTAA 840
Query 853 AATTATTATTTCTCTGTTAAGTGCTACTTCTTCTGCAGTTATCTATGAATGTGCTGGGAC 912
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GATTATTATTTCTCTGTTAAGTGCTACTTCTTCTGCAGTTATCTATGAATGTGCTGGGAC 900
Query 913 ACTTGTTTCTCTCTCATCTGCCCCTACTGCTATTCGAGCTGCTGCCAACACCTACTGCCA 972
||||||||||||||| |||||||| ||||||||| | |||||||||||||||||||||||
Sbjct 901 ACTTGTTTCTCTCTCTTCTGCCCCGACTGCTATTAGGGCTGCTGCCAACACCTACTGCCA 960
Query 973 ACTTCTTCTTTCTCAGAGTGACAACAATGTGAAGCTTATCTTGCTCGATCGGTTGTATGA 1032
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 961 ACTTCTTCTTTCTCAGAGTGACAACAATGTGAAGCTAATATTGCTCGATCGGTTGTATGA 1020
Query 1033 GCTTAAGACATTGCACAGAGATATCATGGTTGAGCTGATAATCGATGTGCTCAGAGCACT 1092
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1021 GCTTAAGACATTGCACAGAGATATCATGGTTGAGTTGATAATAGATGTGCTCAGAGCACT 1080
Query 1093 CTCAAGCCCAAACCTTGATATCCGCAGGAAGACACTTGACATTGCCCTTGACTTGATTAC 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CTCAAGCCCAAACCTTGATATCCGCAGGAAGACACTTGACATTGCCCTTGACTTGATTAC 1140
Query 1153 CCATCATAATATTAATGAAGTCGTTCAAATGTTGAAGAAAGAAGTTGTGAAGACACAGAG 1212
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CCATCATAATATTAATGAGGTCGTTCAAATGTTGAAGAAAGAAGTTGTGAAGACACAGAG 1200
Query 1213 TGGAGAACTTGAGAAGAATGGAGAGTACAGGCAAATGCTTATTCAAGCCATCCATGCTTG 1272
||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 1201 TGGAGAACTTGAGAAGAATGGGGAGTACAGACAAATGCTTATTCAAGCAATCCATGCTTG 1260
Query 1273 TGCAGTTAAGTTCCCCGAAGTTGCAAGCACAGTGGTCCATCTTCTGATGGATTTCCTGGG 1332
|||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||| ||||
Sbjct 1261 TGCAGTGAAGTTCCCCGAAGTTGCAAGTACAGTAGTCCATCTTCTAATGGATTTCTTGGG 1320
Query 1333 AGATAGCAACGTGGCTTCAGCTCTTGACGTGGTTGTTTTCGTTAGAGAGATAATAGAAAC 1392
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1321 AGATAGCAATGTGGCTTCAGCTCTTGACGTGGTTGTTTTTGTTAGAGAGATAATAGAAAC 1380
Query 1393 AAATCCCAAGTTGAGAGTTTCAATCATCACCAGGTTGTTGGACACGTTCTATCAGATCCG 1452
|||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1381 AAATCCGAAGTTAAGAGTTTCAATCATAACCAGGTTGTTGGACACGTTCTATCAGATCCG 1440
Query 1453 TGCAGGAAAGGTCTGCCCTTGTGCACTTTGGATCATTGGTGAGTATTGCCTATCACTTTC 1512
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1441 CGCAGGAAAGGTCTGCCCTTGTGCACTTTGGATTATTGGGGAGTATTGCCTATCACTTTC 1500
Query 1513 AGAAGTTGAGAGTGGCATTTCAACTATTACACAATGCCTTGGCGAATTACCATTTTACTC 1572
|||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||
Sbjct 1501 AGAAGTTGAGAGTGGCATTTCAACCATTAAACAATGCCTTGGCGATTTACCATTTTACTC 1560
Query 1573 TGTTTCTGAGGAGTCTGAGCCAACTGAGACATCAAAGAAGATTCAGCCTACCTCTTCTGC 1632
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1561 TGTTTCTGAGGAGTCTGAGCCAACTGAGACATCGAAGAAGATTCAGCCTACCTCTTCTGC 1620
Query 1633 CATGGTGTCCTCTAGAAAGCCAGTTATTCTTGCTGATGGAACTTATGCTACACAAAGCGC 1692
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1621 CATGGTGTCCTCTAGAAAGCCAGTGATTCTTGCTGATGGAACTTATGCTACCCAAAGCGC 1680
Query 1693 AGCCTCTGAAACCACATTCTCCTCGCCTACAGTT 1726
|||||||||| ||||||||||||| |||||||||
Sbjct 1681 AGCCTCTGAA-CCACATTCTCCTCACCTACAGTT 1713
Score = 2272 bits (1230), Expect = 0.0
Identities = 1461/1567 (93%), Gaps = 38/1567 (2%)
Strand=Plus/Plus
Query 1760 GCACTCCTTCTAACTGGTGATTTTTTCCTCGGAGCTGTGGTTGCTTGCACGTTGACCAAA 1819
||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 1715 GCACTGCTTCTAACTGGTGATTTTTTCCTTGGAGCAGTGGTTGCTTGCACGTTGACTAAA 1774
Query 1820 CTTGTTCTTAGGTTGGAAGAGGTTCAGTCTTCCAAAACTGAAGTAAACAAGACAGT-ATC 1878
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 1775 CTTGTTCTTAGGTTGGAAGAGGTTCAGTCTTCTAAAACTGAAGTAAACAAGACAGTCA-C 1833
Query 1879 ACAGGCTTTGCTAATCATGGTTTCTATTTTGCAACTTGGGCAATCTCCTGTTTCTCCACA 1938
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1834 ACAGGCTTTGCTGATCATGGTTTCTATGTTGCAACTTGGGCAATCTCCTGTTTCTCCACA 1893
Query 1939 CCCTATTGATAATGATTCGTATGAGCGGATTATGTTGTGCATAAAATTGCTTTGCCATAG 1998
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1894 CCCTATTGATAATGATTCGTATGAGAGGATTGTGTTGTGCATAAAATTGCTTTGCCATAG 1953
Query 1999 GAATGTTGAGATGAAAAAGATATGGTTGGAATCCTGCCGCCAGAGTTTTGTCAAGATGAT 2058
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1954 GAATGATGAGATGAAAAAGATATGGTTGGAATACTGCCGCCAGAGTTTTGTCAAGATGAT 2013
Query 2059 TTCTGAAAAACAGCTTAGAGAGATGGAGGAACTGAAGGCAAAGACCCAAACAACTCATGC 2118
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2014 TTCTGAAAAACAGCTTAGAGAGATGGAGGAACTAAAGGCAAAGACCCAAACAACTCATGC 2073
Query 2119 TCAACCGGATGATCTAATTGACTTCTTCCATCTAAAGAGTCGGAAGGGAATGAGTCAACT 2178
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2074 TCAACCTGATGATCTAATTGACTTCTTCCATCTAAAGAGTCGGAAGGGAATGAGTCAACT 2133
Query 2179 TGAGTTGGAAGACCAGGTACAAGATGACCTAAAGCGTGCAACTGGAGAATTCACCAAGGA 2238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2134 TGAGTTGGAAGACCAGGTACAAGATGACCTAAAGCGTGCAACTGGAGAATTCACCAAGGA 2193
Query 2239 CGAGAACGATGCTAACAAACTTAACCGCATTCTTCAACTCACAGGATTCAGTGACCCAGT 2298
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 2194 CGAGAACGATGCTAACAAACTTAACCGCATTCTTCAGCTCACGGGATTCAGTGACCCAGT 2253
Query 2299 CTATGCTGAAGCATATGTAACGGTACACCATTATGATATTGCTCTTGAAGTTACAGTAAT 2358
|||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 2254 CTATGCTGAAGCATATGTGACGGTACACCATTATGATATTGCGCTCGAAGTTACAGTAAT 2313
Query 2359 CAACCGAACCAAGGAAACCCTTCAGAACT-TGTGCTTGGAGTTAGCAACCATGGGTGATC 2417
|||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 2314 CAACCGTACCAAGGAAACCCTTCAGAA-TCTGTGCTTGGAGTTAGCAACCATGGGTGATC 2372
Query 2418 TCAAACTTGTTGAGCGTCCTCAGAACTATAGTCTGGCACCTGAAAGAAGCATGCAGATTA 2477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2373 TCAAACTTGTTGAGCGTCCTCAGAACTATAGTCTGGCACCTGAAAGAAGCATGCAGATAA 2432
Query 2478 AAGCAAACATCAAGGTCTCGTCCACAGAGACAGGAGTCATATTCGGGAACATCGTCTATG 2537
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2433 AAGCAAACATCAAGGTCTCGTCCACAGAGACGGGAGTCATATTCGGGAACATCGTCTATG 2492
Query 2538 AGACATCAAATGTAATGGAGCGCAATGTTGTGGTTCTTAACGACATACACATTGATATCA 2597
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 2493 AGACATCAAATGTAATGGAGCGAAACGTCGTGGTTCTTAACGACATACACATTGATATCA 2552
Query 2598 TGGACTATATCTCCCCTGCTGTGTGCTCAGAGGTTGCTTTCAGAACTATGTGGGCAGAGT 2657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2553 TGGACTATATCTCCCCTGCTGTGTGCTCAGAGGTTGCTTTCAGAACTATGTGGGCAGAGT 2612
Query 2658 TTGAATGGGAAAACAAGGTTGCTGTGAACACCACAATTCAAAACGAAAGAGAATTCCTCG 2717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2613 TTGAATGGGAAAACAAGGTTGCTGTGAACACCACAATTCAAAACGAAAGAGAATTCCTCG 2672
Query 2718 ACCACATTATCAAATCCACAAACATGAAATGTCTCACTGCTCCATCTGCAATAGCAGGTG 2777
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||
Sbjct 2673 ACCACATTATCAAATCCACAAACATGAAATGTCTCACTGCCCCATCCGCAATAGAAGGTG 2732
Query 2778 AATGTGGATTCCTTGCAGCAAACTTATATGCAAAAAGTGTGTTTGGTGAGGATGCTCTTG 2837
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2733 AATGTGGATTCCTTGCAGCAAACTTATATGCAAAAAGTGTGTTTGGTGAAGATGCTCTTG 2792
Query 2838 TGAATTTGAGTATTGAGAAGCAAACGGATGGAACATTGAGTGGTTACATAAGGATAAGGA 2897
||||| ||||||||||||||||||| |||||| |||||||||| ||||||||||||||||
Sbjct 2793 TGAATGTGAGTATTGAGAAGCAAACCGATGGAGCATTGAGTGGCTACATAAGGATAAGGA 2852
Query 2898 GCAAGACGCAAGGGATTGCTCTAAGTCTTGGAGACAAAATCACCCTCAAACAAAAGGGTG 2957
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2853 GCAAGACGCAAGGGATTGCTCTAAGTCTTGGGGACAAAATCACCCTCAAACAAAAGGGTA 2912
Query 2958 GTAGCTGAGGCTTGGAATGATAGCGTGCAAGGTAAAAGGTAAAAGGTTTAGGCTACGTTT 3017
|||||||||| |||||| | | ||||||||||||| |||| | | | | | |||||||
Sbjct 2913 GTAGCTGAGGTTTGGAACGGTGGCGTGCAAGGTAACAGGTTTA-GACT-ACG-TACGTTT 2969
Query 3018 CTCTCTTGAGCAATTTTTCGTTGGTTGATTCTGTTTACTACATGGAGAGAAGAGTCGTTT 3077
|||||||||||||||||| ||||||||| ||||||||||||| ||||||| ||| |||||
Sbjct 2970 CTCTCTTGAGCAATTTTTTGTTGGTTGAATCTGTTTACTACAAGGAGAGAGGAGGCGTTT 3029
Query 3078 AAAGGATATGTAAAGAGTAATTT------GTTATTATTCTTCCT-AAGCCGGTATATTTT 3130
| |||||||||||||||||||| ||||| ||||||||| || || |||||||||
Sbjct 3030 GA-GGATATGTAAAGAGTAATTTCAATTTGTTATCATTCTTCCTTAA-CCAGTATATTTT 3087
Query 3131 CCGGTATGGTACCGATGGATTCTTCCTCA-ACCGGCTGTCTTTTT---ACAGTACTAGAC 3186
||||||||| ||||||||||||||||||| || |||||| ||||| ||| ||||||||
Sbjct 3088 CCGGTATGGCACCGATGGATTCTTCCTCATAC-GGCTGTGTTTTTTTTACACTACTAGAC 3146
Query 3187 GATTTTGTTTTATTTGTAATACTTT-TTCTTCT---ATAATCTTGTTTATCGAGGAGACT 3242
|||||||||||||| ||||| |||| ||||||| |||| | |||| | ||||||| |
Sbjct 3147 GATTTTGTTTTATTGGTAATGCTTTCTTCTTCTTCTATAAAGTCGTTTGTTGAGGAGATT 3206
Query 3243 GAA-CTGTTGAACG--CGTT-ATCA-ATAGTAGATTTCAAAGTTACATGGGTTTGTTCCA 3297
|| | || || | | || | | |||||||||||||||| |||||||||| ||||
Sbjct 3207 -AAGCCGT-GA-CTTTC-TTGAA-ATATAGTAGATTTCAAAG---CATGGGTTTGCTCCA 3258
Query 3298 TTTTAGA 3304
||||||
Sbjct 3259 ATTTAGA 3265
> Ahg950384 jgi|Araly1|950384|scaffold_802271.1
Length=2806
Score = 771 bits (417), Expect = 0.0
Identities = 811/997 (81%), Gaps = 44/997 (4%)
Strand=Plus/Plus
Query 114 AAAAGATGGACAAATCTA-GTAC-CATGCTTGTTCACTATGACAAAGGGACTCCAGCAGT 171
|||||||||| ||||| | |||| | |||| || ||||||||||||| ||||| ||| |
Sbjct 16 AAAAGATGGAGAAATC-ATGTACGC-TGCTAATTTACTATGACAAAGGAACTCCTGCAAT 73
Query 172 TGCTAATGAGATTAAAGAAGCTCTCGAAGGAAATGATGT-TGAAGCTAAAGTTGATGCCA 230
||| || ||||| ||||||||||| ||||| || ||||| | || ||| | |||||
Sbjct 74 TGCGAACGAGATCAAAGAAGCTCTAGAAGGGAACGATGTAT-CTGCGAAAATCGATGCGT 132
Query 231 TGAAGAAGGCAATTATGCTTTTGCTGAATGGTGAAAC-CATTCCTCAGCTTTTCATTACC 289
||||||| ||||| ||||||||||| ||||||||||| | | || ||||||||||| ||
Sbjct 133 TGAAGAACGCAATCATGCTTTTGCTTAATGGTGAAACTC-TGCCACAGCTTTTCATCACT 191
Query 290 ATTATAAGATATGTGCTGCCTTCTGAAGACCACACCA-TCCAAAAGCTTCTGTTGCTGTA 348
||||| |||||||| || | |||||||||||| || |||| ||||| ||| |||| |
Sbjct 192 ATTATCAGATATGTTTTGACGACTGAAGACCACA-CAGTCCAGAAGCTACTGCTGCTTTT 250
Query 349 CCTGGAG-CTGATTGA-AAAGACAGATTCGAAGGGGAAGGTGTTGCCTGAAATGATTTTG 406
||||||| | || || ||| || ||||| || ||||||||||| ||||| ||||| |||
Sbjct 251 CCTGGAGAC-AATCGAGAAA-ACCGATTCTAAAGGGAAGGTGTTACCTGAGATGATATTG 308
Query 407 ATATGCCAGAATCTTCGTAATAACCTTCAGCATCCGAATGAGTACATCCGTGGAGTGACA 466
||||| |||||||| | || ||||||||||||||||| ||||||||||||||||| ||
Sbjct 309 ATATGTCAGAATCTGAGGAACAACCTTCAGCATCCGAACGAGTACATCCGTGGAGTTAC- 367
Query 467 C-TGAGGTTTCTCT-GTCGGA-TGAAG-GAGACTGAA-ATAGTGGAACCTTTGACTCCAT 521
| || |||| || | | | || || || ||||||||| || |||| ||| ||| ||| |
Sbjct 368 CTTGCGGTTCCT-TAG-CCGATTG-AGAGAGACTGAAGTTA-TGGAGCCTCTGATTCCGT 423
Query 522 CAGTGTTACAAAATCTGGAGCATCGCCATCCATTTGTTCGCAGGAATGCAATTCTGGCAA 581
| ||||| || |||||||||||||||||||| ||||| || |||||||| ||| |||| |
Sbjct 424 CTGTGTTGCAGAATCTGGAGCATCGCCATCCGTTTGTCCGTAGGAATGCGATTTTGGCTA 483
Query 582 TCATGTCGATATATAAACTTCCACATGGCGACCAACTCTTCG-TGGATGCACCTGAAATG 640
| |||||||| ||||| || ||||| || ||||| ||||| | | ||||||||||||| |
Sbjct 484 TTATGTCGATTTATAAGCTCCCACAAGGTGACCAGCTCTT-GATAGATGCACCTGAAACG 542
Query 641 ATCGAGAAAGTTCTATCAACAGAACAAGATCCTTCTGCCAAGAGAAATGCATTTCTAATG 700
|| ||||||||||| | || ||||| ||||| ||||| || ||||| || ||||| |||
Sbjct 543 ATTGAGAAAGTTCTGGCTACCGAACAGGATCCCTCTGCTAAAAGAAACGCGTTTCTTATG 602
Query 701 CTCTTTACCTGTG-CCGAAGAACGTGCAGTGAATTATCTTCTGAGC-AATGTTGACAAGG 758
||||| | || | | |||| || || || || |||||||||| | |||||||| | ||
Sbjct 603 CTCTTCAATTGCGATC-AAGACCGAGCTGTAAACTATCTTCTGA-CTAATGTTGATAGGG 660
Query 759 TTTCAGACTGGAATGAATCACTTCAGATGGTGGTGCTGGAGCTGATTC--GAAGTGTGTG 816
|||| || |||||||||| |||||||||||||| ||||| | | || |||| || ||
Sbjct 661 TTTCTGAGTGGAATGAATTGCTTCAGATGGTGGTTCTGGA-ATTAATCAAGAAG-GTTTG 718
Query 817 TAAGACTAAACCAGCGGAGAAGGGAAAATATATTAAAATTATTATTTCTCTGTTAAGTGC 876
|| ||| |||||| | |||||||| || |||||||| |||||||| ||||||||| |||
Sbjct 719 TAGGACCAAACCATCAGAGAAGGGGAAGTATATTAAGATTATTATAGCTCTGTTAAATGC 778
Query 877 TACTTCTTCTGCAGTTATC-TATGAATGTGCTGGGACACTTGTTTCTCTCTCATCTGC-C 934
|||| |||||||||| | ||||||||||| ||||||||||||||||| |||||||| |
Sbjct 779 GCCTTCATCTGCAGTTA-CTTATGAATGTGCCGGGACACTTGTTTCTCTATCATCTGCGC 837
Query 935 CCTACTGCTATTCGAGCTGCTGCCAACACCTACTGCCAACTTCTTCTTTCTCAGAGTGAC 994
|| || |||||| |||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 838 CC-ACCGCTATTAGAGCAGCTGCCAACACCTACTGCCAGCTTCTTCTTTCTCAGAGTGAC 896
Query 995 AACAATGTGAAGCTTATCT-TGCTCGATCGGTTGTATGAGCTTAA-GACAT-TGCACAGA 1051
|||||||||||||| || | |||| ||| ||||| ||||||| || | | | | ||||||
Sbjct 897 AACAATGTGAAGCTAAT-TGTGCTTGATAGGTTGAATGAGCTCAAAGCC-TCT-CACAGA 953
Query 1052 GATATCATGGTTGAGCTGATAATCGATGTGCTCAGAG 1088
|| |||||||||||| |||| || |||||||| ||||
Sbjct 954 GAGATCATGGTTGAGATGATCATGGATGTGCTAAGAG 990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124790781867
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5