BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31500.1
Length=1745
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944834 jgi|Araly1|944834|scaffold_701063.1 2678 0.0
> Ahg944834 jgi|Araly1|944834|scaffold_701063.1
Length=1586
Score = 2678 bits (1450), Expect = 0.0
Identities = 1542/1587 (97%), Gaps = 4/1587 (0%)
Strand=Plus/Plus
Query 22 TAAGTCAAAC--AGaaaaaaaTGGATCTCTTATTGATTATAGCCGGTTTAGTAGCGGCTG 79
|||||||||| ||||||||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct 1 TAAGTCAAACAAAGAAAAAAATGGATCTCTTCTTGATTATAGCCGCTTTGGTAGCGGCTG 60
Query 80 CAGCCTTCTTTTTCCTCCGTAGCACGACCAAGAAATCTCTCCGGTTACCTCCGGGACCAA 139
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 CAGCCTTCTTTTTCCTCCGTAGCACGACCAAGAAATCTCTCCGGCTACCTCCGGGACCAA 120
Query 140 AAGGTCTTCCTATTATAGGAAACCTTCACCAGATGGAGAAATTCAACCCCCAACACTTCC 199
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 121 AAGGTCTTCCTATTATAGGAAACCTTCACCAGATGGAGAAATTCAATCCACAACACTTCC 180
Query 200 TTTTCCGTCTCTCCAAGCTATACGGCCCGATTTTCACGATGAAAATCGGTGGCCGTCGCC 259
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 TTTTCCGTCTATCCAAGCTATACGGCCCGATTTTCACGATGAAAATCGGAGGCCGTCGCC 240
Query 260 TCGCGGTGATCTCCTCGGCCGAGCTAGCCAAGGAGCTACTCAAAACTCAAGACCTCAACT 319
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 TAGCGGTGATCTCCTCGGCCGAGCTAGCCAAGGAGCTACTCAAGACTCAAGACCTCAACT 300
Query 320 TCACCGCTCGTCCTCTCTTGAAAGGGCAACAAACCATGTCGTATCAAGGCCGTGAGCTTG 379
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 301 TCACCGCTCGTCCTCTCTTGAAAGGTCAACAAACGATGTCGTATCAAGGCCGTGAGCTCG 360
Query 380 GTTTCGGACAGTACACCGCGTACTACCGTGAGATGAGGAAGATGTGTATGGTGAACCTCT 439
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTTCGGACAGTACACCGCCTACTACCGTGAGATGAGGAAGATGTGTATGGTGAACCTCT 420
Query 440 TCAGCCCGAACCGTGTCGCAAGTTTCAGACCGGTTAGAGAAGAAGAGTGTCAACGGATGA 499
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 421 TCAGCCCAAACCGTGTCGCAAGTTTCAGACCGGTTAGAGAAGAAGAGTGCCAACGGATGA 480
Query 500 TGGACAAGATCTATAAAGCCGCTGATCAATCAGGCACCGTTGATCTAAGTGAGCTTCTCT 559
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 481 TGGACAAGATCTACAAAGCCGCTGATCAATCAGGCACCGTTGATCTAAGTGAGCTCCTCT 540
Query 560 TGTCTTTCACTAACTGTGTCGTATGTAGACAAGCTTTTGGGAAACGGTACAATGAGTACG 619
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGTCTTTCACCAACTGTGTCGTATGTAGACAAGCTTTTGGGAAACGGTACAATGAGTACG 600
Query 620 GCACAGAGATGAAGAGATTCATAGATATCTTGTACGAGACGCAAGCACTTTTGGGCACTC 679
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 601 GTACAGAGATGAAGAGATTCATAGACATCTTGTACGAGACGCAAGCACTTTTGGGCACTC 660
Query 680 TGTTTTTCTCCGACCT-TTTCCCTTATTTCGGATTCCTTGACAACCTCACTGGTCTCAGT 738
|||||||||||||||| ||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 661 TGTTTTTCTCCGACCTCTTT-CCTTATTTTGGATTCCTTGACAACCTCACTGGTCTTAGT 719
Query 739 GCACGTCTCAAGAAAGCTTTCAAGGAGCTTGACACTTACCTTCAAGAACTTCTAGACGAG 798
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 720 GCGCGTCTCAAGAAAGCTTTTAAGGAGCTTGACACTTACCTTCAAGAACTTCTAGACGAG 779
Query 799 ACTCTTGACCCTAACCGCCCTAAACAAGAAACAGAGAGTTTCATTGATCTTTTGATGCAG 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ACTCTTGACCCTAACCGCCCTAAACAAGAAACAGAGAGTTTCATTGATCTTTTGATGCAG 839
Query 859 ATCTACAAAGACCAACCTTTCTCCATCAAATTCACTCACGAAAATGTCAAGGCCATGATA 918
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 840 ATCTACAAAGACCAACCTTTCTCCATCAAATTTACTCACGAAAATGTCAAGGCCATGATA 899
Query 919 TTGGATATTGTTGTGCCGGGAACTGACACGGCGGCTGCAGTGGTGGTATGGGCCATGACT 978
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 900 TTGGATATTGTTGTGCCGGGAACTGACACGGCGGCTGCGGTGGTGGTATGGGCCATGACT 959
Query 979 TACCTTATTAAGTACCCTGAAGCAATGAAGAAAGCTCAAGACGAAGTGAGGAGTGTGATA 1038
|||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 960 TACCTTATAAAGTACCCTGAAGCGATGAAGAAAGCTCAAGACGAAGTGAGGAATGTGATA 1019
Query 1039 GGTGACAAAGGATATGTCTCTGAAGAAGACATACCTAATCTCCCTTACCTAAAGGCAGTC 1098
|| ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 1020 GGCGACAAAGGATATGTCTCGGAAGAAGATATACCTAATCTCCCTTACCTCAAGGCAGTC 1079
Query 1099 ATCAAGGAGTCTCTTCGGCTCGAACCAGTCATCCCCATTCTTCTACACAGAGAAACTATC 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ATCAAGGAGTCTCTTCGGCTCGAACCAGTCATCCCCATTCTTCTACACAGAGAAACTATC 1139
Query 1159 GCAGACGCAAAGATAGGTGGCTATGATATTCCGGCCAAGACCATCATTCAGGTGAACGCA 1218
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1140 GCAGACGCAAAGATCGGTGGCTATGATATCCCGGCCAAGACCATCATTCAGGTGAACGCG 1199
Query 1219 TGGGCGGTTTCTCGTGACACAGCCGCGTGGGGAGACAACCCTAATGAGTTCATTCCAGAG 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TGGGCGGTTTCTCGTGACACAGCCGCGTGGGGAGACAACCCTAATGAGTTCATTCCAGAG 1259
Query 1279 AGGTTCATGAACGAGCACAAAGGAGTGGACTTCAAGGGCCAAGATTTTGAGCTCCTACCT 1338
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AGGTTCATGAAGGAGCACAAAGGAGTGGACTTCAAGGGCCAAGATTTTGAGCTCCTACCT 1319
Query 1339 TTCGGGTCGGGCCGGAGAATGTGCCCGGCCATGCATCTTGGGATTGCAATGGTAGAGATA 1398
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1320 TTCGGGTCGGGCCGGAGAATGTGCCCGGCCATGCATCTTGGGATCGCAATGGTAGAGATA 1379
Query 1399 CCTTTCGCTAACCTTCTCTACAAATTTGACTGGAGTCTACCTAAAGGGATTAAACCAGAG 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 CCTTTCGCTAACCTTCTCTACAAATTTGACTGGAGTCTACCTAAAGGGATTAAACCAGAG 1439
Query 1459 GATATAAAGATGGACGTCATGACTGGACTCGCTATGCACAAGAAAGAACACCTCGTTCTT 1518
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1440 GATATAAAGATGGACGTCATGACTGGACTCGCTATGCACAAGAAAGAACACCTCGTCCTT 1499
Query 1519 GCACCAACGAAACACATCTGATGCTATATATATCATTAGGACGTTTCTGCTGGTAGATAT 1578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 GCACCAACGAAACACATCTGATGCTATATATATCATTAGGACGTTTCTGCTGGTAGATAT 1559
Query 1579 GGCGTGACCAATGGTTATTTTTCATTG 1605
|||||||||||||||| ||||||||||
Sbjct 1560 GGCGTGACCAATGGTTGTTTTTCATTG 1586
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65477131155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5