BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31510.1
Length=793
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491586 jgi|Araly1|491586|fgenesh2_kg.7__1019__AT4G31510.1 965 0.0
Ahg481311 jgi|Araly1|481311|fgenesh2_kg.4__371__AT2G24550.1 261 6e-69
> Ahg491586 jgi|Araly1|491586|fgenesh2_kg.7__1019__AT4G31510.1
Length=756
Score = 965 bits (522), Expect = 0.0
Identities = 713/797 (89%), Gaps = 46/797 (6%)
Strand=Plus/Plus
Query 1 ATGGAGGTTCTGGTAGGTTCTACGTTTAGGGATCGTAGCAGCGTCACGACGCATGATCAG 60
||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct 1 ATGGAGGTTCTGGTAGGTTCTACGTTTAGGGATCGGAGCAGCGTCACGGCGCAGGATCAG 60
Query 61 GCCGTACCGGCGTCTCTGTCTAGCCGGATTGGTTTGAGGAGATGTGGTAGATCTCCTCCG 120
|| ||||| ||| |||||||||| ||||||||||| ||||||||||||||| | | |||
Sbjct 61 GCTGTACCAGCGGCTCTGTCTAGTCGGATTGGTTTAAGGAGATGTGGTAGA--T-CGCCG 117
Query 121 CCGGAGAGTTCGTCGTCCGTTGGAGAAACCAGCGAAAACGAGGAAGATGAAGACGACGCC 180
||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||
Sbjct 118 CCGGAGAGTTCGTCGTCTGTTGGAGAAAGCAGCGAAAACGAGGAAGAAGAAGACGACGCC 177
Query 181 GTTTCGTCATCACAAGGAAGATGGCTCAATTCGTTTAGTTCATCTTTGGAAGATTCTCTT 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 178 GTTTCGTCATCACAAGGAAGATGGCTTAATTCGTTTAGTTCATCTTTGGAAGATTCTCTT 237
Query 241 CCGATTAAGAGAGGATTATCAAACCATTACATAGGGAAATCGAAATCGTTTGGGAATTTA 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CCGATCAAGAGAGGATTATCAAACCATTACATAGGGAAATCGAAATCGTTTGGGAATTTA 297
Query 301 ATGGAAGCGAGTAACACAAACGATTTGGTGAAAGTGGAGAGTCCATTGAACAAGAGAAGA 360
||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 298 ATGGAAGCGAGCAACGCAAAGGATTTGGTGAAAGTGGAGAGTCCATTGAACAAGAGAAGG 357
Query 361 AGATTGCTTATTGCTAATAAGCTAAGAAGAAGATCGTCCTTGTCTTCTTTCAGCATCTAC 420
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 358 AGATTGCTTATTGCTAATAAGCTAAGGAGAAGATCATCCTTGTCTTCTTTCAGCATCTAC 417
Query 421 ACTAAAATTAACCCTAATTCTATGCCGTTGCTTGCATTGCAAGAATCTGAC-AACGAGGA 479
|| || |||||||||||||||||||| || ||||||||||||||||||||| || || ||
Sbjct 418 ACCAAGATTAACCCTAATTCTATGCCTTTACTTGCATTGCAAGAATCTGACCAA-GACGA 476
Query 480 TCATAAACTCAatgatgatgatgatgatgatgatagtagcagtgatgatgaAACTAGTAA 539
||| ||||||||||||||||| | | | | ||| ||| ||| || | |
Sbjct 477 TCACAAACTCAATGATGATGA--A--AC--T-A--GTA--AGT--TGA--AA----G-A- 515
Query 540 GCTGAAAGAGAAGAGGATGAAGATGACGAACCATAGAGATTTTATGGTTCCTCAGACTAA 599
| || ||| || |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 516 G---AA-GAG--GA---TGAAGATGACCAACCATAGAGATTTTATGGTTCCTCAGACTAA 566
Query 600 GAGCTGTTTTAGCTTAACTAGTTTTCAAgatgatgat-gatcgatgatcgatgat-CATT 657
|||||||||||||||||||||||||||||||||||| | | ||| || || | | |
Sbjct 567 AAGCTGTTTTAGCTTAACTAGTTTTCAAGATGATGATCGGT-GATCATTTTTGTTTC-T- 623
Query 658 CTTCTTCTTTTGTCCAAGAGTAGATAAAGTTTCGTTGACAAATAAGTTGGAGGAAGATTT 717
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 624 CTTCTTCTTTTGTC-AAGAGTAGATAAAGTTTCGTTGACAA-TAAGTTGGAGGAAGATTT 681
Query 718 GACAGAAACCAATTTACGTGTAATTGTAATAAATTAATTTGACTGTTTGTATATTTTG-- 775
||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 682 GACAGAAACAAATTTATGTTTAATTGTAATAAATTAATTTGACTGTTTGTATATTTTGGT 741
Query 776 AATTTTCTCAACGAAGT 792
|||| |||||||||||
Sbjct 742 AATT--CTCAACGAAGT 756
> Ahg481311 jgi|Araly1|481311|fgenesh2_kg.4__371__AT2G24550.1
Length=973
Score = 261 bits (141), Expect = 6e-69
Identities = 236/280 (84%), Gaps = 13/280 (5%)
Strand=Plus/Plus
Query 122 CGGAGAGTTCGTCGTCCG-TTGGAGAAACCAGCGAAAACGAGGA--A-GATGAAGACGAC 177
|||| |||||||||| || | ||||| | ||| ||||||||||| | || |||||||||
Sbjct 260 CGGATAGTTCGTCGT-CGATCGGAGAGAGCAGTGAAAACGAGGAGGAGGAAGAAGACGAC 318
Query 178 GCCGTTTCGTCATCACAAGGAAGATGGCTCAATTCGTTTAGTTCATCT-TTGGAAGATTC 236
|||||||||| | ||| || || || ||||||||||||| ||| || ||||| ||
Sbjct 319 GCCGTTTCGT--GC-CAAAGAGGAACACTTGATTCGTTTAGTTCTTCTCTT-GAAGACTC 374
Query 237 TCTTCCGATTAAGAGAGGATTATCAAACCATTACATAGGGAAATCGAAATCGTTTGGGAA 296
||| |||||||||||||||||||| |||||||| | |||||||||||||||||||||||
Sbjct 375 TCTCCCGATTAAGAGAGGATTATCGAACCATTATGTCGGGAAATCGAAATCGTTTGGGAA 434
Query 297 TTTAATGGAAGC-G--AGTAACACAAACGATTTGGTGAAAGTGGAGAGTCCATTGAACAA 353
|||||||||||| | |||| | |||| ||||||| |||||| |||| |||||| |||||
Sbjct 435 TTTAATGGAAGCTGCGAGTACCGCAAAGGATTTGGAGAAAGTTGAGAATCCATTTAACAA 494
Query 354 GAGAAGAAGATTGCTTATTGCTAATAAGCTAAGAAGAAGA 393
|||||| |||||| ||||||||||||||||||| ||||||
Sbjct 495 GAGAAGGAGATTGGTTATTGCTAATAAGCTAAGGAGAAGA 534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29278400256
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5