BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31530.2
Length=1220
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491584 jgi|Araly1|491584|fgenesh2_kg.7__1017__AT4G31530.1 1736 0.0
> Ahg491584 jgi|Araly1|491584|fgenesh2_kg.7__1017__AT4G31530.1
Length=1193
Score = 1736 bits (940), Expect = 0.0
Identities = 954/961 (99%), Gaps = 0/961 (0%)
Strand=Plus/Plus
Query 1 AAATTAAATAATGGCTTCTCCTTAAAATTATCTAAGCTCGCTTGACCAATCATGGCTACC 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 AAATTAAATAATGGCTTCTCCTTAAAATTATCTAAGCTCGCTTGACCATTCATGGCTACC 60
Query 61 ACCACCAATCTCAGCTTCGCTCCTCCCTCTTACTCCCGTTTTGCCGCTACAAAATCCCAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACCACCAATCTCAGCTTCGCTCCTCCCTCTTACTCCCGTTTTGCCGCTACAAAATCCCAA 120
Query 121 ATCAGAAACCCTCTGTTTACGTCCCCCCTGCCACTCCCATCTTCTTTCTTCCTGGTTAGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATCAGAAACCCTCTGTTTACGTCCCCCCTGCCACTCCCATCTTCTTTCTTCCTGGTTAGA 180
Query 181 AATGAAGCATCTTTATCTTCGTCAATCACGCCAGTCCAAGCTTTTACAGAAGAAGCCGTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AATGAAGCATCTTTATCTTCGTCAATCACGCCAGTCCAAGCTTTTACAGAAGAAGCCGTC 240
Query 241 GATACTTCGGATTTAGCTTCTTCTTCTTCAAAGCTTGTACTTGTCGTTGGCGGCACTGGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATACTTCGGATTTAGCTTCTTCTTCTTCAAAGCTTGTACTTGTCGTTGGCGGCACTGGT 300
Query 301 GGTGTAGGTCAACTTGTGGTAGCTTCATTGCTCAAGAGGAATATAAGATCAAGGTTATTA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGTGTAGGTCAACTTGTGGTAGCTTCATTGCTCAAGAGGAATATAAGATCAAGGTTATTA 360
Query 361 CTGCGTGATCTTGACAAAGCTACCAAGTTATTTGGCAAACAAGATGAATATTCCTTGCAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTGCGTGATCTTGACAAAGCTACCAAGTTATTTGGCAAACAAGATGAATATTCCTTGCAG 420
Query 421 GTAGTTAAAGGGGATACTAGGAATGCAGAGGATCTTGATCCATCCATGTTTGAGGGTGTC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTAGTTAAAGGGGATACTAGGAATGCAGAGGATCTTGATCCATCCATGTTTGAGGGTGTC 480
Query 481 ACACATGTGATTTGTACCACTGGAACTACAGCTTTTCCTTCTAAGAGGTGGAATGAAGAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACACATGTGATTTGTACCACTGGAACTACAGCTTTTCCTTCTAAGAGGTGGAATGAAGAA 540
Query 541 AACACTCCTGAGAAAGTAGATTGGGAAGGTGTGAAGAATCTCATTTCAGCATTGCCATCA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AACACTCCTGAGAAAGTAGATTGGGAAGGTGTGAAGAATCTCATTTCAGCATTGCCATCA 600
Query 601 TCGGTGAAGAGAGTTGTTTTGGTTTCATCAGTAGGTGTGACCAAGTCTAATGAGCTACCC 660
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCGGTGAAGAGACTTGTTTTGGTTTCATCAGTAGGTGTGACCAAGTCTAATGAGCTACCC 660
Query 661 TGGAGCATCATGAACCTTTTTGGAGTTCTTAAGTACAAGAAGATGGGGGAAGATTTTCTT 720
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 661 TGGAGCATCATGAACCTTTTTGGAGTTCTTAAATACAAGAAGATGGGGGAAGATTTTCTT 720
Query 721 CGTGACTCTGGTCTTCCATTCACCATTATCAGACCTGGTAGATTGACTGATGGACCATAC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CGTGACTCTGGTCTTCCATTCACCATTATCAGACCTGGTAGATTGACTGATGGACCATAC 780
Query 781 ACATCTTATGATCTGAATACTTTGCTCAAAGCTACAGCTGGTGAAAGGCGTGCAGTTGTT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ACATCTTATGATCTGAATACTTTGCTCAAAGCTACAGCTGGTGAAAGGCGTGCAGTTGTT 840
Query 841 ATTGGTCAAGGGGACAACCTTGTTGGAGAGGTAAGTAGACTTGTAGTGGCTGAAGCTTGT 900
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATTGGTCAAGGGGACAAACTTGTTGGAGAGGTAAGTAGACTTGTAGTGGCTGAAGCTTGC 900
Query 901 ATACAGGCACTTGATATTGAATTCACACAAGGCAAAGCTTACGAGATCAATTCAGTAAAG 960
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 901 ATACAGGCACTTGATATAGAATTCACACAAGGCAAAGCTTACGAGATCAATTCAGTTAAG 960
Query 961 G 961
|
Sbjct 961 G 961
Score = 298 bits (161), Expect = 7e-80
Identities = 190/202 (94%), Gaps = 9/202 (4%)
Strand=Plus/Plus
Query 1003 GGGGATGGTCCAGGAAGTGATCCACAGCAATGGCGAGAGTTGTTTAAAGCTGCAGAATCC 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GGGGATGGTCCAGGAAGTGATCCACAGCAATGGCGAGAGTTGTTTAAAGCTGCAGAATCC 1020
Query 1063 AAATGACAAAAGAGGACTTTTGAGAGATGTGTACAGAATTGTTAGCGAGACATTACATAT 1122
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AAATGACAAAAGAGGACATTTGAGAGATGTGTACAGAATTGTTAGCGAGACATTACATAT 1080
Query 1123 ATGGTCGA-TTGTGTATACATGTGCTTTCTTTTGGTCTTTG--------ACTTCATCATT 1173
|||||||| |||||||||||| || |||||||||||||||| |||||||||||
Sbjct 1081 ATGGTCGAATTGTGTATACATATGTTTTCTTTTGGTCTTTGTCTCTTTGACTTCATCATT 1140
Query 1174 ACTGTAATTACTTTATCTATAA 1195
||||||||||||||||||||||
Sbjct 1141 ACTGTAATTACTTTATCTATAA 1162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45556885815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5