BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G31530.2 Length=1220 Score E Sequences producing significant alignments: (Bits) Value Ahg491584 jgi|Araly1|491584|fgenesh2_kg.7__1017__AT4G31530.1 1736 0.0 > Ahg491584 jgi|Araly1|491584|fgenesh2_kg.7__1017__AT4G31530.1 Length=1193 Score = 1736 bits (940), Expect = 0.0 Identities = 954/961 (99%), Gaps = 0/961 (0%) Strand=Plus/Plus Query 1 AAATTAAATAATGGCTTCTCCTTAAAATTATCTAAGCTCGCTTGACCAATCATGGCTACC 60 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1 AAATTAAATAATGGCTTCTCCTTAAAATTATCTAAGCTCGCTTGACCATTCATGGCTACC 60 Query 61 ACCACCAATCTCAGCTTCGCTCCTCCCTCTTACTCCCGTTTTGCCGCTACAAAATCCCAA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ACCACCAATCTCAGCTTCGCTCCTCCCTCTTACTCCCGTTTTGCCGCTACAAAATCCCAA 120 Query 121 ATCAGAAACCCTCTGTTTACGTCCCCCCTGCCACTCCCATCTTCTTTCTTCCTGGTTAGA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ATCAGAAACCCTCTGTTTACGTCCCCCCTGCCACTCCCATCTTCTTTCTTCCTGGTTAGA 180 Query 181 AATGAAGCATCTTTATCTTCGTCAATCACGCCAGTCCAAGCTTTTACAGAAGAAGCCGTC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AATGAAGCATCTTTATCTTCGTCAATCACGCCAGTCCAAGCTTTTACAGAAGAAGCCGTC 240 Query 241 GATACTTCGGATTTAGCTTCTTCTTCTTCAAAGCTTGTACTTGTCGTTGGCGGCACTGGT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GATACTTCGGATTTAGCTTCTTCTTCTTCAAAGCTTGTACTTGTCGTTGGCGGCACTGGT 300 Query 301 GGTGTAGGTCAACTTGTGGTAGCTTCATTGCTCAAGAGGAATATAAGATCAAGGTTATTA 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GGTGTAGGTCAACTTGTGGTAGCTTCATTGCTCAAGAGGAATATAAGATCAAGGTTATTA 360 Query 361 CTGCGTGATCTTGACAAAGCTACCAAGTTATTTGGCAAACAAGATGAATATTCCTTGCAG 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 CTGCGTGATCTTGACAAAGCTACCAAGTTATTTGGCAAACAAGATGAATATTCCTTGCAG 420 Query 421 GTAGTTAAAGGGGATACTAGGAATGCAGAGGATCTTGATCCATCCATGTTTGAGGGTGTC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GTAGTTAAAGGGGATACTAGGAATGCAGAGGATCTTGATCCATCCATGTTTGAGGGTGTC 480 Query 481 ACACATGTGATTTGTACCACTGGAACTACAGCTTTTCCTTCTAAGAGGTGGAATGAAGAA 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 ACACATGTGATTTGTACCACTGGAACTACAGCTTTTCCTTCTAAGAGGTGGAATGAAGAA 540 Query 541 AACACTCCTGAGAAAGTAGATTGGGAAGGTGTGAAGAATCTCATTTCAGCATTGCCATCA 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 AACACTCCTGAGAAAGTAGATTGGGAAGGTGTGAAGAATCTCATTTCAGCATTGCCATCA 600 Query 601 TCGGTGAAGAGAGTTGTTTTGGTTTCATCAGTAGGTGTGACCAAGTCTAATGAGCTACCC 660 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TCGGTGAAGAGACTTGTTTTGGTTTCATCAGTAGGTGTGACCAAGTCTAATGAGCTACCC 660 Query 661 TGGAGCATCATGAACCTTTTTGGAGTTCTTAAGTACAAGAAGATGGGGGAAGATTTTCTT 720 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 661 TGGAGCATCATGAACCTTTTTGGAGTTCTTAAATACAAGAAGATGGGGGAAGATTTTCTT 720 Query 721 CGTGACTCTGGTCTTCCATTCACCATTATCAGACCTGGTAGATTGACTGATGGACCATAC 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 CGTGACTCTGGTCTTCCATTCACCATTATCAGACCTGGTAGATTGACTGATGGACCATAC 780 Query 781 ACATCTTATGATCTGAATACTTTGCTCAAAGCTACAGCTGGTGAAAGGCGTGCAGTTGTT 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 ACATCTTATGATCTGAATACTTTGCTCAAAGCTACAGCTGGTGAAAGGCGTGCAGTTGTT 840 Query 841 ATTGGTCAAGGGGACAACCTTGTTGGAGAGGTAAGTAGACTTGTAGTGGCTGAAGCTTGT 900 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 841 ATTGGTCAAGGGGACAAACTTGTTGGAGAGGTAAGTAGACTTGTAGTGGCTGAAGCTTGC 900 Query 901 ATACAGGCACTTGATATTGAATTCACACAAGGCAAAGCTTACGAGATCAATTCAGTAAAG 960 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 901 ATACAGGCACTTGATATAGAATTCACACAAGGCAAAGCTTACGAGATCAATTCAGTTAAG 960 Query 961 G 961 | Sbjct 961 G 961 Score = 298 bits (161), Expect = 7e-80 Identities = 190/202 (94%), Gaps = 9/202 (4%) Strand=Plus/Plus Query 1003 GGGGATGGTCCAGGAAGTGATCCACAGCAATGGCGAGAGTTGTTTAAAGCTGCAGAATCC 1062 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 GGGGATGGTCCAGGAAGTGATCCACAGCAATGGCGAGAGTTGTTTAAAGCTGCAGAATCC 1020 Query 1063 AAATGACAAAAGAGGACTTTTGAGAGATGTGTACAGAATTGTTAGCGAGACATTACATAT 1122 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 AAATGACAAAAGAGGACATTTGAGAGATGTGTACAGAATTGTTAGCGAGACATTACATAT 1080 Query 1123 ATGGTCGA-TTGTGTATACATGTGCTTTCTTTTGGTCTTTG--------ACTTCATCATT 1173 |||||||| |||||||||||| || |||||||||||||||| ||||||||||| Sbjct 1081 ATGGTCGAATTGTGTATACATATGTTTTCTTTTGGTCTTTGTCTCTTTGACTTCATCATT 1140 Query 1174 ACTGTAATTACTTTATCTATAA 1195 |||||||||||||||||||||| Sbjct 1141 ACTGTAATTACTTTATCTATAA 1162 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45556885815 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5