BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31550.1
Length=1177
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944827 jgi|Araly1|944827|scaffold_701056.1 1310 0.0
Ahg481313 jgi|Araly1|481313|fgenesh2_kg.4__373__AT2G24570.1 525 3e-148
> Ahg944827 jgi|Araly1|944827|scaffold_701056.1
Length=1049
Score = 1310 bits (709), Expect = 0.0
Identities = 952/1058 (90%), Gaps = 61/1058 (6%)
Strand=Plus/Plus
Query 71 AAGAAATCATCATGGCCGTCGATCTAATGCGTTTCCCTAAGATAGATGATCAAACGGCTA 130
|||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 10 AAGAGATCATCATGGCCGTCGATCTAATGCGTTTTCCTAAGATGGATGATCAAACGGCTA 69
Query 131 TTCAGGAAGCTGCATCGCAAGGTTTACAAAGTATGGAACATCTGATCCGTGTCCTCTCTA 190
||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 70 TTCAGGAGGCTGCATCTCAAGGTTTACAGAGTATGGAACATCTGATCCGTGTCCTCTCTA 129
Query 191 ACCGTCCCGAACAACAACACAACGTTGACTGCTCCGAGATCACTGACTTCACCGTTTCTA 250
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 130 ACCGTCCCGAACAACAACACAACGTTGACTGCTCTGAGATCACTGATTTCACCGTTTCTA 189
Query 251 AATTCAAAACCGTCATTTCTCTCCTTAACCGTACTGGTCACGCTCGGTTCAGACGCGGAC 310
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 190 AATTCAAAACCGTCATTTCTCTCCTTAACCGTACCGGTCACGCTCGCTTCAGACGCGGAC 249
Query 311 CGGTTCACTCCACTTCCTCTGCCGCATCTCAGAAACTACAGAGTCAGATCGTTAAAAAT- 369
|||||||||||| || || ||||| ||||| ||||||||||||||| |||||
Sbjct 250 CGGTTCACTCCA-TT--TC------ATCTCCGAAACAACAGAGTCAGATCGT-AAAAACG 299
Query 370 ACTCAACCTGA-GGCTCCG------A-T-AGT-G---AGAACAACTACGAATCACCCTCA 416
| |||||| || ||||||| | | || | |||||||| ||||||| ||| ||
Sbjct 300 ATTCAACC-GAAGGCTCCGGTTGTTACTCAGCCGGCGAGAACAACGACGAATCTCCCGCA 358
Query 417 AATCGTTCCTCCACCGTC----T------A---G--T--G--TA----A-CACTCGATTT 452
||| ||||| |||||||| | | | | | || | ||||||||||
Sbjct 359 AATAGTTCCACCACCGTCGAGCTTTGTTCACTCGAATCAGCCTAGCGTAACACTCGATTT 418
Query 453 CTCTAAACCAAGCATCTTCGGCACCAAAGCTAAGAGCGCCGAGCTGGAATTCTCCAAAG- 511
||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct 419 CTCCAAACCAAGCATCTTCGGCACCAAAGCTAAGAGCTCCGACCTGGAATTCTC-AAAGG 477
Query 512 AAAACTTCAGTGTTTCTTTAAACTCCTCATTCATGTCGTCGGCGA-TAACCGGAGACGGC 570
|||||||||| |||||||||||||| || ||||||||||||| || | ||||||||||||
Sbjct 478 AAAACTTCAGCGTTTCTTTAAACTCTTCCTTCATGTCGTCGG-GAATTACCGGAGACGGC 536
Query 571 AGCGTCTCCAATGGAAAAATCTTCCTTGCTTCTGCTCCGTTGCAGCCTGTTAACTCTTCC 630
||||| ||||||||||||||||| || || |||||||||| ||||||||| ||||| |||
Sbjct 537 AGCGTTTCCAATGGAAAAATCTTTCTCGCGTCTGCTCCGTCGCAGCCTGTGAACTCCTCC 596
Query 631 GGAAAACCACCGTTGGC---TGGTCATCCTTACAGAAAGAGATGTCTCGAGCATGAGCAC 687
||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 597 GGAAAGCCACCGTTGGCCGCTGGTCATCCTTACAGAAAGAGATGCCTCGAGCATGAGCAC 656
Query 688 TCAGAGAGTTTCTCCGGAAAAGTCTCCGGCTCCGCCTACGGAAAGTGCCATTGCAAGAAA 747
|| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 657 TCCGAGAGTTTCTCCGGCAAAGTCTCCGGCTCCGGCTACGGAAAGTGCCATTGCAAGAAA 716
Query 748 AGCAGGAAAAATCGGATGAAGAGAACCGTGAGAGTACCGGCGATAAGTGCAAAGATCGCC 807
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 717 AGCAGGAAAAATCGGATGAAGAGAACTGTGAGAGTACCGGCGATAAGTGCAAAGATCGCC 776
Query 808 GATATTCCACCGGACGAATATTCGTGGAGGAAGTACGGACAAAAACCGATCAAGGGCTCA 867
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 777 GATATTCCACCGGACGAATATTCTTGGAGGAAGTACGGACAAAAACCGATCAAAGGCTCA 836
Query 868 CCACACCCACGTGGTTACTACAAGTGCAGTACATTCAGAGGATGTCCAGCGAGGAAACAC 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CCACACCCACGTGGTTACTACAAGTGCAGTACATTCAGAGGATGTCCAGCGAGGAAACAC 896
Query 928 GTGGAACGAGCATTAGATGATCCAGCGATGCTTATTGTGACATACGAAGGAGAGCACCGT 987
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 897 GTGGAACGAGCATTAGATGATCCAGCGATGCTTATCGTGACATACGAAGGAGAGCACCGT 956
Query 988 CATAACCAATCCGCGATGCAGGAGAATATTTCTTCTTCAGGCATTAATGATTTAGTGTTT 1047
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 957 CATAACCAATCCGCGATGCAGGAGAATATTTCTTCTTCAGGCGTTAATGATTTAGTGTTT 1016
Query 1048 GCCTCGGCTTGACttttttttgtactatttgttttttg 1085
|||||||||| |||||||| ||| ||| ||||||||
Sbjct 1017 GCCTCGGCTTAACTTTTTT--GTA--ATT-GTTTTTTG 1049
> Ahg481313 jgi|Araly1|481313|fgenesh2_kg.4__373__AT2G24570.1
Length=1298
Score = 525 bits (284), Expect = 3e-148
Identities = 486/582 (84%), Gaps = 20/582 (3%)
Strand=Plus/Plus
Query 448 GATTTCTCTAAACCAAGCATCTTCGGCACCAAAGCTAAGAGCGCCGA-GCTG--GAATTC 504
|||||| ||| ||||||| | || ||| | ||| | |||||| |||| | || || |||
Sbjct 423 GATTTCACTAGACCAAGCGTGTTTGGCGCTAAAACCAAGAGCTCCGAGGTTGTTGAGTTC 482
Query 505 TCCAAAGAAAACTTCAGTGTTTCTT-TAAACTCCTCATTCATGTCGTCGGCGATAACCGG 563
| || || | || || || |||| | ||||| || |||||||| |||||||| |||||
Sbjct 483 GCTAAGGAGAGTTTTAGCGTATCTTCT-AACTCTTCTTTCATGTCTTCGGCGATCACCGG 541
Query 564 AGACGGCAGCGTCTCCAATGGA---AAAATCTTCCTTGCTTCTGCTCCGTTGCAG--CCT 618
||||| |||||||| || ||| ||||| |||||| | |||||| || | ||
Sbjct 542 TGACGGAAGCGTCTCTAAAGGATCTTCTATCTTTCTTGCTCCGGCTCCG--GCGGTTCC- 598
Query 619 GTT-AACTCTTCCGGAAAACCACCGTTGGCTGGTCATCCTTACAGAAAGAGATGTC-TCG 676
|| || || ||||| ||||| ||| | |||||| |||||||||||||||||| | | |
Sbjct 599 ATTGAATTCCTCCGGGAAACCGCCGCTCTCTGGTCTTCCTTACAGAAAGAGATG-CTTTG 657
Query 677 AGCATGAGCACTCAGA-GAGTTTCTCCGGAAAAG-TCTCCGGCTCCGCCTACGGAAAGTG 734
| ||||| ||||| || || ||| ||||| ||| |||| ||||||| | |||| |||||
Sbjct 658 AACATGACCACTCCGAGGACTTT-TCCGG-CAAGATCTCTGGCTCCGGCAACGGCAAGTG 715
Query 735 CCATTGCAAGAAAAGCAGGAAAAATCGGATGAAGAGAACCGTGAGAGTACCGGCGATAAG 794
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CCACTGCAAGAAAAGCCGGAAAAATCGGATGAAGAGAACCGTGAGAGTACCGGCGATAAG 775
Query 795 TGCAAAGATCGCCGATATTCCACCGGACGAATATTCGTGGAGGAAGTACGGACAAAAACC 854
|||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 776 TGCAAAGATCGCCGATATACCACCAGACGAATATTCATGGAGGAAGTACGGACAAAAACC 835
Query 855 GATCAAGGGCTCACCACACCCACGTGGTTACTACAAGTGCAGTACATTCAGAGGATGTCC 914
|||||| ||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 836 GATCAAAGGCTCACCACATCCACGAGGTTATTACAAGTGTAGTACATTCAGAGGATGTCC 895
Query 915 AGCGAGGAAACACGTGGAACGAGCATTAGATGATCCAGCGATGCTTATTGTGACATACGA 974
|||||||||||||||||||||||| || |||||| || ||||||| |||||||| |||||
Sbjct 896 AGCGAGGAAACACGTGGAACGAGCTTTGGATGATTCAACGATGCTGATTGTGACTTACGA 955
Query 975 AGGAGAGCACCGTCATAACCAATCCGCGATGCAGGAGAATAT 1016
||| || |||||||| |||| ||||||||||||||||||||
Sbjct 956 AGGGGAACACCGTCACCACCAGTCCGCGATGCAGGAGAATAT 997
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43917600384
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5