BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31580.1
Length=1012
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491582 jgi|Araly1|491582|fgenesh2_kg.7__1015__AT4G31580.1 1397 0.0
> Ahg491582 jgi|Araly1|491582|fgenesh2_kg.7__1015__AT4G31580.1
Length=965
Score = 1397 bits (756), Expect = 0.0
Identities = 884/943 (94%), Gaps = 19/943 (2%)
Strand=Plus/Plus
Query 72 CCATTCTTTTTGCCCCTTGAGTGCTTTCAGCTCTTCCCACAAGGTTACAGAAGTA-ATGT 130
||||||||||| | |||| || ||||||||||||||||| |||||||||||| | ||||
Sbjct 38 CCATTCTTTTT-TCGCTTGGGTACTTTCAGCTCTTCCCACGAGGTTACAGAAG-ACATGT 95
Query 131 CACGTGTGTACGTCGGAAATTTGGACCCGCGAGTTACTGAGCGTGAACTTGAGGATGAGT 190
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 96 CGCGTGTGTACGTCGGAAATCTGGACCCGCGAGTTACTGAGCGTGAACTTGAGGATGAGT 155
Query 191 TCCGTGCCTTTGGAGTTGTCAGGAGTGTTTGGGTTGCCCGTAGACCACCTGGTTACGCTT 250
||||| ||||||||||| ||||||||||||||||||| || |||||||||||||||||||
Sbjct 156 TCCGTACCTTTGGAGTTATCAGGAGTGTTTGGGTTGCTCGGAGACCACCTGGTTACGCTT 215
Query 251 TTCTAGATTTCGAAGATCCTAGGGATGCCCGTGATGCTATCCGTGCTTTAGATGGCAAGA 310
|||||||||||||||||||||||||||||||||| || ||||||| | ||||||||||||
Sbjct 216 TTCTAGATTTCGAAGATCCTAGGGATGCCCGTGACGCCATCCGTGATGTAGATGGCAAGA 275
Query 311 ATGGCTGGAGGGTTGAACAGTCTCACAATCGAggtgagcgtggtggcggcggtcgtggtg 370
|||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 276 ATGGCTGGAGAGTTGAACAGTCACACAACCGAGGTGAGCGTGGTGGTGGCGGTCGTGGTG 335
Query 371 gtgaccgtggaggtggtggcggcggccgtggtggtcgtggtggcTCTGATTTGAAATGCT 430
|||||||||||||||| ||||||||||||||| | | | ||||||||||||||||
Sbjct 336 GTGACCGTGGAGGTGGCGGCGGCGGCCGTGGT-G-C----T---TCTGATTTGAAATGCT 386
Query 431 ATGAATGCGGTGAGACTGGTCATTTCGCACGTGAATGCCGTAACCGTGGTGGAACTGGAA 490
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 387 ATGAATGTGGTGAGACTGGTCATTTCGCACGTGAATGCCGTAACCGTGGTGGCACTGGGA 446
Query 491 GGCGTCGCAGCAAGAGCCGTAGTCGCACTCCTCCAAGATACAGAAGGAGCCCAAGCTATG 550
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 447 GGCGTCGCAGCAGGAGCCGTAGTCGCAGTCCTCCAAGATACAGAAGGAGCCCAAGCTATG 506
Query 551 GACGGAGGAGTTACAGCCCTCGTGCAAGATCTCCCCCTCCTCCAAGGCGCCGCAGTCCTT 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 GACGGAGGAGTTACAGCCCTCGTGCAAGATCTCCCCCTCCTCCAAGGCGCCGCAGTCCTT 566
Query 611 CTCCTCCTCCTGCCCGTGGCCGCAGCTACAGTAGATCACCACCTCCATACAGAGCGCGTG 670
||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 567 CTCCTCCTCCTGCCCGTGGTCGCAGCTACAGTAGGTCACCACCTCCATACAGAGCACGTG 626
Query 671 AGGAAGTGCCATATGCTAATGGAAATGGACTGAAAGAAAGACGCAGAAGCAGGAGCTGAG 730
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 627 AGGAAGTGCCATATGCCAATGGAAATGGACTGAAAGATAGACGCAGAAGCAGGAGCTGAG 686
Query 731 TGAGTGATTTTGCAAGAAAACGAGTGTGTGGG-AG--GATACTTTGGAAGAGAAGAAGAG 787
| || |||||||||||||||||| ||||| || |||||| ||||||||||||||||
Sbjct 687 T--GT--TTTTGCAAGAAAACGAGTACGTGGGAAGAAGATACTGTGGAAGAGAAGAAGAG 742
Query 788 AGGGACTAAGGGAAGTTACTATCATCTATGAATTTCAGTAAGAGAACATGTTTTAGGTCT 847
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 743 AGGGCCTAAGGAAAGTTACTATCATCTATGAATTTCAGTAAGAGAACATGTTTTAGGTGT 802
Query 848 GCTGGGTTGGATAAAGCTTGCTACTTTTGCTTTTGGATATGAAACGTACGTAGTTGTGTA 907
||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 803 GCTGGATTGGATAAAGCTTGGTACTTTTGCTTTTGGATATGAAGCGTACGTAGTTGTGTA 862
Query 908 TCTACCAATAGGTAAAAGAACACTTGATTCGTACCCTAGTTTCTTAAAGACATAATGTTT 967
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 863 TCTACCAATAGGTAAAAGAACACTTGATTCGTACCCTAGTTTCTTAAAGACATAATATTT 922
Query 968 GATTGGAAATTCTGCTAAATGCCTAAGCGTTTCTTGTCTTTTT 1010
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 GATTGGAAATTCTGCTAAATGCCTAAGCGTTTCTTGTCTTTTT 965
Score = 54.7 bits (29), Expect = 1e-06
Identities = 31/32 (97%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 20 AATTTCAGATTCAGAAACCCTAATTTCTTCAC 51
||| ||||||||||||||||||||||||||||
Sbjct 1 AATCTCAGATTCAGAAACCCTAATTTCTTCAC 32
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37627319079
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5