BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31590.1
Length=2717
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491580 jgi|Araly1|491580|fgenesh2_kg.7__1013__AT4G31590.1 4244 0.0
Ahg932530 jgi|Araly1|932530|scaffold_400518.1 2241 0.0
> Ahg491580 jgi|Araly1|491580|fgenesh2_kg.7__1013__AT4G31590.1
Length=2672
Score = 4244 bits (2298), Expect = 0.0
Identities = 2590/2722 (95%), Gaps = 56/2722 (2%)
Strand=Plus/Plus
Query 1 AAAATGGGTCTCTAGATTTCAGATTTCTGGGATCTGGGTGTTAGATTAATCTCTTTCTCT 60
||||||||||||||||||||||||||||||||||||| |||| |||| | |||||
Sbjct 1 AAAATGGGTCTCTAGATTTCAGATTTCTGGGATCTGGATGTTTGATT-A-----GTCTCT 54
Query 61 TCCATTATTAGTAGAGAAAGCTCACTCCTTTCACTCAAAGTTTCTACCTTTTTGTTTTCC 120
||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 55 TCCATTATTAGTA-AGAAAGGTCACTCCTTTCACTCAAAGTTACTACCTTTTTGTTTTCC 113
Query 121 TGAAAATGGGTTGTGTTTGAAATCTCACACTTTGAGATTTGGGTGTTTATTTTGGGATCC 180
|||||||||||| ||||| ||||||| |||||||||| || || ||||| |
Sbjct 114 TGAAAATGGGTTTTGTTTAAAATCTCCCACTTTGAGA-TT---TG--------GGGAT-C 160
Query 181 TTCTTACCACATTTAGAAATTTCAGCTAGGGTTTTCGATTTCTCTACTTCTCAGAGGAGA 240
||||||||||||||| |||||| ||||| ||||| |||||||||| | | |
Sbjct 161 --CTTACCACATTTAGAGATTTCAACTAGGTTTTTCTATTTCTCTAC-T-T-------G- 208
Query 241 TTTTAGAGGCAAAAGATGGCTCCAAGGTTGGATTTTTCAGATTGGTGGGCGAAAGACACG 300
| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 209 --TCAGAGGCTAAAGATGGCTCCAAGGTTGGATTTTTCAGATTGGTGGGCGAAGGACACG 266
Query 301 AGGAAAGGAACACCAGTTGTGGTGAAAATGGAGAATCCTAATTACTCTGTAGTTGAAATC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 AGGAAAGGAACACCAGTTGTGGTGAAAATGGAGAATCCTAATTACTCTGTAGTTGAAATC 326
Query 361 GACGGTCCAGATTCGGCTTTTAGACCAGTGGAGAAGAGCAGAGGCAAGAACGCTAAGCAA 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 GACGGTCCAGATTCAGCTTTTAGACCAGTGGAGAAGAGCAGAGGCAAGAACGCTAAGCAA 386
Query 421 GTCACTTGGGTTTTGCTTCTCAAAGCTCATAGAGCTGTTGGATGTCTCACTTGGCTCGCC 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 387 GTCACTTGGGTTTTGCTTCTCAAAGCTCATAGAGCTGTTGGGTGTCTCACTTGGCTCGCC 446
Query 481 ACTGTCTTTTGGTCTCTCCTTGGTGCCATCAAGAAACGGCTTAGTTTCACTCACCCACTT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 ACTGTCTTTTGGTCTCTCCTTGGTGCCATCAAGAAACGGCTTAGTTTCACTCACCCACTT 506
Query 541 GGCTCTGAGAAATTAGGCAGAGACAGATGGCTTTTCACTGCCATTAAGCTCTTCTTAGCT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 GGCTCTGAGAAATTAGGCAGAGACAGATGGCTTTTCACTGCCATTAAGCTCTTCTTAGCT 566
Query 601 GTTTCCTTAGTGATTCTCGGCTTTGAGATTGTTGCTTATTTTAGAGGATGGCATTACTTT 660
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 567 GTTTCCTTACTGATTCTCGGGTTTGAGATTGTTGCTTATTTTAGAGGATGGCATTACTTT 626
Query 661 CAAAGCCCTAGTCTTCACATCCCCACTAGCACACTTGAGATCCAGAGCCTGTTTCATCTT 720
||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 627 CAAAGTCCTAACCTTCACATCCCCACTAGCACACTTGAGATCCAGAGCCTGCTTCATCTT 686
Query 721 GTGTATGTTGGTTGGTTAACCCTTAGAGCTGATTATATTGCTCCTCCCATCAAAGCTCTC 780
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 687 GTGTATGTTGGTTGGTTAACCCTTAGAGCTGATTATATTGCTCCTCCTATCAAAGCTCTC 746
Query 781 TCCAAGTTTTGTATTGTGCTGTTCCTTATACAGTCAGTAGATCGTTTGGTACTTTGCTTG 840
|||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 747 TCCACGTTTTGTATTGTGCTGTTCCTTATACAGTCCGTAGATCGTTTGATACTTTGCTTG 806
Query 841 GGTTGTTTTTGGATCAAGTATAAGAAAATTAAGCCGAGATTTGATGAGGAACCTTTCCGT 900
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 GGATGTTTTTGGATCAAGTATAAGAAAATTAAGCCGAGATTTGATGAGGAACCTTTCCGT 866
Query 901 AATGATGATGCTGAGGGATCTGGATCTGAGTATCCAATGGTTCTTGTTCAGATTCCAATG 960
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 867 AATGATGATGCTGAGGGATCTGGATTTGAGTATCCAATGGTTCTTGTTCAGATTCCAATG 926
Query 961 TGCAATGAGAGAGAGGTGTATGAACAATCTATATCTGCCGTGTGTCAACTTGACTGGCCG 1020
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 927 TGCAATGAGAGAGAGGTGTATGAACAATCTATATCTGCTGTGTGTCAACTTGACTGGCCG 986
Query 1021 AAAGATCGAATACTGGTTCAGGTTCTCGATGATTCGAATGATGAAAGCATCCAACAGTTA 1080
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 987 AAAGATCGAATACTGGTTCAGGTTCTCGATGATTCGAACGATGAAAGCATCCAACAATTA 1046
Query 1081 ATTAAAGCTGAGGTTGCCAAATGGAGCCAAAAGGGAGTCAACATAATCTACAGGCATCGC 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 ATTAAAGCTGAGGTTGCCAAATGGAGCCAAAAGGGAGTCAACATAATCTACAGGCATCGC 1106
Query 1141 TTGGTTAGAACTGGATATAAAGCTGGTAACCTCAAATCAGCAATGAGCTGTGATTACGTT 1200
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1107 TTGGTTAGAACTGGGTATAAAGCTGGTAACCTCAAGTCAGCAATGAGCTGTGATTACGTG 1166
Query 1201 GAAGCATACGAGTATGTCGCAATCTTTGATGCCGATTTCCAGCCTACTCCGGATTTCCTT 1260
||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1167 GAAGCATACGAGTATGTTGCAATATTTGATGCCGATTTCCAACCTACTCCGGATTTCCTT 1226
Query 1261 AAACTAACAGTTCCACATTTCAAGGATAACCCAGAGTTAGGTCTAGTTCAAGCTAGATGG 1320
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1227 AAACTAACAATTCCACATTTCAAGGATAACCCAGAGTTGGGTCTAGTTCAAGCTAGATGG 1286
Query 1321 ACATTTGTGAACAAAGACGAGAACTTGTTGACCCGTCTTCAGAACATCAATCTGTGTTTT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 ACATTTGTGAACAAAGACGAGAACTTGTTGACCCGTCTTCAGAACATCAATCTGTGTTTT 1346
Query 1381 CACTTTGAGGTGGAGCAGCAAGTGAACGGCGTGTTCTTGAACTTCTTTGGTTTCAATGGA 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1347 CACTTTGAGGTGGAGCAGCAAGTGAACGGCGTGTTCTTGAACTTCTTTGGTTTCAATGGA 1406
Query 1441 ACAGCTGGAGTATGGAGAATCAAAGCCCTTGAGGAATCTGGTGGTTGGCTTGAAAGGACT 1500
||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1407 ACAGCTGGAGTTTGGAGAATTAAAGCCCTCGAGGAATCTGGTGGTTGGCTTGAAAGGACC 1466
Query 1501 ACTGTGGAGGATATGGACATAGCAGTCCGCGCTCATCTTCATGGATGGAAGTTCATATAT 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1467 ACTGTGGAGGATATGGACATAGCAGTCCGCGCTCATCTTCATGGATGGAAGTTCATATAT 1526
Query 1561 CTTAATGACGTCAAGGTCCTTTGCGAAGTTCCTGAGTCCTACGAGGCATATAAGAAGCAG 1620
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1527 CTTAATGATGTCAAGGTCCTTTGCGAAGTTCCTGAGTCCTACGAAGCATATAAGAAGCAG 1586
Query 1621 CAACACCGTTGGCATTCGGGACCTATGCAGCTTTTCCGCTTGTGTCTTGGTTCAATCTTG 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1587 CAACACCGTTGGCATTCGGGACCTATGCAGCTTTTCCGCTTGTGTCTTGGTTCAATCTTG 1646
Query 1681 ACCTCTAAGATAGCGATATGGAAGAAGGCGAATCTGATACTTCTCTTCTTTCTTCTTAGG 1740
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1647 ACCTCTAAGATAGCCATATGGAAGAAGGCGAATCTGATACTTCTATTCTTTCTTCTTAGG 1706
Query 1741 AAACTCATACTTCCTTTCTACTCCTTCACTTTGTTCTGCATAATCCTTCCACTCACCATG 1800
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1707 AAACTCATACTTCCTTTCTACTCCTTCACGTTGTTCTGCATAATCCTTCCACTCACCATG 1766
Query 1801 TTTGTTCCAGAAGCTGAGCTCCCTGTTTGGGTCATCTGCTACATACCAGTTTTCATGTCT 1860
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1767 TTTGTTCCAGAAGCTGAGCTCCCTGTTTGGGTCATCTGCTACATACCGGTTTTCATGTCT 1826
Query 1861 TTCCTCAACCTTCTTCCATCTCCAAAATCGTTTCCTTTCATCGTTCCTTATCTCTTATTC 1920
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1827 TTCCTCAACCTTCTTCCATCTCCAAAATCGTTTCCTTTCATTGTTCCTTATCTCTTGTTC 1886
Query 1921 GAGAACACAATGTCTGTCACCAAGTTCAATGCGATGGTGTCCGGATTATTCCAATTGGGT 1980
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1887 GAGAACACAATGTCTGTCACCAAGTTCAACGCGATGGTGTCCGGATTATTCCAATTGGGT 1946
Query 1981 AGCTCTTACGAGTGGATTGTCACAAAGAAAGCTGGAAGATCATCAGAGTCAGATCTTTTA 2040
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1947 AGCTCTTACGAGTGGATTGTCACAAAGAAAGCTGGAAGATCATCCGAGTCAGATCTTTTA 2006
Query 2041 TCTATCACCGAGAAAGAGACACCAACCAAGAAAAGTCAATTGCTTAGGGGAGTTTCCGAC 2100
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 2007 TCTATCACCGAGAAAGAGATACCAAACAAGAAAAGTCAATTGCTTAGGGGAGTTTCCGAC 2066
Query 2101 AGCGAACTTTTGGAGCTGAGCCAACTTGAAGAACAGAAACAAGCGGTTTCAAAGAAACCT 2160
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2067 AGCGAGCTTTTGGAGCTGAGCCAACTTGAAGAACAGAAACATGCGGTTTCAAAGAAACCC 2126
Query 2161 GTCAAGAAAACCAACAAGATATACCACAAAGAGCTCGCATTGGCCTTTCTTTTGCTCACT 2220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2127 GTCAAGAAAACCAACAAGATATACCACAAAGAGCTCGCATTGGCCTTTCTTTTGCTCACT 2186
Query 2221 GCAGCGCTTAGGAGTCTCTTGGCAGCACAAGGAGTGCATTTCTACTTCCTGTTATTCCAA 2280
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2187 GCAGCGCTTAGGAGTCTCTTGGCAGCTCAAGGAGTGCATTTCTACTTCCTGTTATTCCAA 2246
Query 2281 GGTGTTACCTTTCTTCTTGTGGGTCTCGATCTCATAGGCGAGCAGATGAGCTGAGAAGAA 2340
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2247 GGTGTCACCTTTCTTCTTGTGGGTCTCGATCTCATAGGCGAGCAGATGAGCTGAGAAAAA 2306
Query 2341 CA-AAAGAAGATTCATAACTCGGGTCAATAAATCAGTGAGTTTGAATTTCC-ACTTCCTC 2398
|| ||||||| ||||||||| |||||||||||||||||||| ||| || || ||||||||
Sbjct 2307 CAGAAAGAAGCTTCATAACTTGGGTCAATAAATCAGTGAGTCTGA-TTCCCCACTTCCTC 2365
Query 2399 TATGTTCAGTGGTATCCTCTGTAATGAGATTGTTGGAACCATAGTGGTAGGCATTAATTG 2458
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2366 TATGTTCAGTGGTATCCTCTGTAATGAGATTGTTGGAACCATAGTGGTAG-CATTAATTG 2424
Query 2459 ATTTTCCGTTTCGTTTGTTTGTTTGTTATGTTGGTTTGATTCCTCCATTGTTAGGGATAG 2518
||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2425 ATTTTCCGTTT--T--GTTTGTTTGTTATGTTTGTTTGATTCCTCCATTGTTAGGGATAG 2480
Query 2519 AGTGTG--AGCCAGAGATTCATACATGTATACAATATCTGTAAAGTTGGAACATGTTGTT 2576
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2481 AGTGTGTGAGCCAGAGATTCATACATGTATACAATATCTGTAAAGTTGGAACATGTTGTT 2540
Query 2577 GGCAGTTAAAAGAGCTTCTGTCTTG-AACTAATTTCAAGGATCATGTCAAATCA-CTGCA 2634
||||||||||||||| ||||||||| ||| |||| |||| | |||||||||||| ||||
Sbjct 2541 GGCAGTTAAAAGAGCCTCTGTCTTGGAACAAATT-CAAGAACCATGTCAAATCAACTGC- 2598
Query 2635 GAGAATTTATGTAATTTAAAGTCCAACCTTTGTGGAAAGAGATTGTAACTGTAAATAACT 2694
| || | ||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 2599 G-GA------G-AATTTAAAGCCCAACCTTTGTGGAAAGAGATTGTAACTGTACATAACT 2650
Query 2695 AACAAGAACCAGTTTTCTGACT 2716
||| |||| ||||||||||||
Sbjct 2651 GACATGAACTAGTTTTCTGACT 2672
> Ahg932530 jgi|Araly1|932530|scaffold_400518.1
Length=2116
Score = 2241 bits (1213), Expect = 0.0
Identities = 1833/2127 (86%), Gaps = 63/2127 (3%)
Strand=Plus/Plus
Query 251 AAAAGATGGCTCCAAGGTTGGATTTTTCAGATTGGTGGGCGAAAGACACGAGGAAAGGAA 310
|||| |||||||||||||| ||||||||||||| ||||| ||| || || |||| ||| |
Sbjct 18 AAAA-ATGGCTCCAAGGTTTGATTTTTCAGATTTGTGGGTGAAGGAAACAAGGAGAGGTA 76
Query 311 CACCAGTTGTGGTGAAAATGGAGAATCCTAATTACTCTGTAGTTGAAATCGACGG-TCCA 369
||||||| |||||||||||||||||||| |||||||| | |||||| | || || |||
Sbjct 77 CACCAGTAGTGGTGAAAATGGAGAATCCCAATTACTCAATCGTTGAAGTTGA-GGAACCA 135
Query 370 GATTCGGC-TTTTAGACCAGTGGAGAAGAGCAGAGGCAAGAACGCTAAGCAAGTCACTTG 428
|| || || ||| | |||| |||||||||| |||||||| || ||||||||||| |||||
Sbjct 136 GACTCTGCATTTCA-ACCAATGGAGAAGAGTAGAGGCAAAAATGCTAAGCAAGTGACTTG 194
Query 429 GGTTTTGCTTCTCAAAGCTCATAGAGCTGTTGGATGTCTCACTTGGCTCGCCACTGTCTT 488
||| ||||||| |||||||| | |||||||||||||||||||||| | || || || ||
Sbjct 195 GGTACTGCTTCTTAAAGCTCACAAAGCTGTTGGATGTCTCACTTGGTTAGCAACAGTGTT 254
Query 489 TTGGTCTCTCCTTGGTGCCA-TCAAGA-AACGGCTTAGTTTCACTCACCCACTT-GGCTC 545
|||||||| |||||| || |||||| || |||||||||||||||||||| || |||||
Sbjct 255 CTGGTCTCTTCTTGGT-TCAGTCAAGAGAA-GGCTTAGTTTCACTCACCCA-TTAGGCTC 311
Query 546 TGAGA-AATTAGGCAGAGACAGATGGCTTTTCACTGCCATTAAGCTCTTCTTAGCTGTTT 604
||||| | || || |||||||||||||||||| | || |||||||||||||||| || ||
Sbjct 312 TGAGAGACTT-GGTAGAGACAGATGGCTTTTCTCAGCTATTAAGCTCTTCTTAGTTGCTT 370
Query 605 CCTTAG-TGATTCTCGGCTTTGAGATT-GTTGCTTATTTTAGAGGATGGCATTACTTTC- 661
| |||| | ||||| || |||||| || |||||||||| ||||||||||||||| |||
Sbjct 371 CATTAGCT-ATTCTTGGGTTTGAG-TTAGTTGCTTATTACAGAGGATGGCATTAC-TTCA 427
Query 662 AAAGCCCTAGTCTT-CACATCCCCACTAGCACACTTGAGATCCAGAGCCTGTTTCATCTT 720
||| ||||| | || |||||||| || |||| |||||||||||||||| ||||||||| |
Sbjct 428 AAAACCCTAAT-TTACACATCCCAACAAGCAAACTTGAGATCCAGAGCTTGTTTCATC-T 485
Query 721 G-TGTATGTTGGTTGGTTAACCCTT-AGAGCTGATTATATTGCTCCTCCCATCAAAGCTC 778
| | |||||||||||||| | || ||||||||||||||||||||||| ||||||||||
Sbjct 486 GCTTTATGTTGGTTGGTTGA-GTTTAAGAGCTGATTATATTGCTCCTCCAATCAAAGCTC 544
Query 779 TCTCCAAGTTTTGTATTGTGCTGTTCCTTATACAGTCAGTAGATCGTTTGGTACTTTGCT 838
|||| |||||||||||||| ||||||||| ||||||| |||||||||||| | |||||||
Sbjct 545 TCTCAAAGTTTTGTATTGTACTGTTCCTTGTACAGTCTGTAGATCGTTTGATTCTTTGCT 604
Query 839 TGGGTTGTTTTTGGATCAAGTATAAGAAAATTAAGCCGAGATTTGATGAGGAACCTTTCC 898
| || |||||||||||||||| |||||| |||||||||||| | |||| || ||||| |
Sbjct 605 TAGGCTGTTTTTGGATCAAGTTTAAGAAGATTAAGCCGAGAATCAATGATGAGCCTTTTC 664
Query 899 GTAATGATGATGCTGAGGGATCTGGATCTGAGTATCCAATGGTTCTTGTTCAGATTCCAA 958
| |||||||||| ||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 665 GAAATGATGATGTTGAAGGATCAGGATCTGAGTATCCAATGGTTCTTGTTCAGATACCAA 724
Query 959 TGTGCAATGAGAGAGAGGTGTATGAACAATCTATATCTGCCGTGTGTCAACTTGACTGGC 1018
||||||||||||||||||| ||||| |||||||| ||||| || ||||| ||||||||||
Sbjct 725 TGTGCAATGAGAGAGAGGTATATGAGCAATCTATGTCTGCTGTATGTCAGCTTGACTGGC 784
Query 1019 CGAAAGATCGAATACTGGTTCAGGTTCTCGATGATTCGAATGATGAAAGCATCCAACAGT 1078
||||||||||| | || |||||||||| || |||||| |||||||||||||||| ||||
Sbjct 785 CGAAAGATCGACTGCTAATTCAGGTTCTAGACGATTCGGATGATGAAAGCATCCAGCAGT 844
Query 1079 TAATTAAAGCTGAGGTTGCCAAATGGAGCCAAAAGGGAGTCAACATAATCTACAGGCATC 1138
|||||| |||||||||| | ||||||||||||||||| ||||||||||| ||| ||||||
Sbjct 845 TAATTAGAGCTGAGGTTACTAAATGGAGCCAAAAGGGTGTCAACATAATTTACCGGCATC 904
Query 1139 GCTTGGTTAGAACTGGATATAAAGCTGGTAACCTCAAATCAGCAATGAGCTGTGATTACG 1198
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 905 GCTTGGTTAGAACTGGATACAAAGCTGGTAACCTCAAATCTGCAATGAGCTGTGATTATG 964
Query 1199 TTGAAGCATACGAGTATGTCGCAATCTTT-GATGCCGATTTCCAGCCTA-CTCCGGATTT 1256
| ||||| ||||||| ||| ||||| ||| ||||| |||||||| |||| ||| ||||||
Sbjct 965 TGGAAGCTTACGAGTTTGTTGCAAT-TTTCGATGCGGATTTCCAACCTAACTC-GGATTT 1022
Query 1257 CCTTAAACTAACAGTTCCACATTTCAAGGATAACCCAGAGTTAGGTCTAGTTCAAGCTAG 1316
|||||||||||| ||||||||||||||||| || || ||||||||||| ||||| |||||
Sbjct 1023 CCTTAAACTAACTGTTCCACATTTCAAGGAGAAGCCTGAGTTAGGTCTGGTTCAGGCTAG 1082
Query 1317 ATGGACATTTGTGAACAAAGACGAGAACTTGTTGACCCGTCTTCAGAACATCAATCTGTG 1376
||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1083 GTGGGTGTTTGTGAACAAAGATGAGAACTTGTTGACCCGTCTTCAAAACATCAATCTGTG 1142
Query 1377 TTTTCACTTT-GAGGTGGAGCAGCAAGTGAACGGCGTGTTCTTGAACTTCTTTGGTTTCA 1435
|||||| ||| || || |||||||| || || |||||||||||||| |||||||||||||
Sbjct 1143 TTTTCA-TTTCGAAGTTGAGCAGCAGGTTAATGGCGTGTTCTTGAATTTCTTTGGTTTCA 1201
Query 1436 ATGGAACAGCTGGAGTATGGAGAATCAAAGCCCTTGAGGAATCTGGTGGTTGGCTTGAAA 1495
||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1202 ATGGAACTGCTGGAGTATGGAGAATTAAAGCCCTTGAGGAATCTGGAGGTTGGCTTGAAA 1261
Query 1496 GGACTACTGTGGAGGATATGGACATAGCAGTCCGCGCTCATCTTCATGGATGGAAGTTCA 1555
|||| || || ||||||||||| ||||| || || |||||||| ||||||||||| ||||
Sbjct 1262 GGACAACCGTCGAGGATATGGATATAGCTGTTCGAGCTCATCTCCATGGATGGAAATTCA 1321
Query 1556 TATATCTTAATGACGTCAAGGTCCTTTGCGAAGTTCCTGAGTCCTACGAGGCATATAAGA 1615
|||||||||| || |||||||| ||||| |||||||||||||| || || ||||| ||||
Sbjct 1322 TATATCTTAACGATGTCAAGGTTCTTTGTGAAGTTCCTGAGTCATATGAAGCATACAAGA 1381
Query 1616 AGCAGCAACACCGTTGGCATTCGGGACCTATGCAGCT-TTTCCGCTTGTGTCTTG-GTTC 1673
|||||||||| || ||||| |||||||| |||||||| |||| |||||||||| | | ||
Sbjct 1382 AGCAGCAACATCGATGGCACTCGGGACCAATGCAGCTATTTC-GCTTGTGTCT-GCGATC 1439
Query 1674 AATCTTGACCTCTAAGATAGCGATATGGAAGAAGGCGAATCTGATACTTCTCTTCTTTCT 1733
|||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||| ||
Sbjct 1440 AATCTTGACCTCTAAGATTGCGATGTGGAAGAAGGCAAATCTGATACTTCTATTCTTCCT 1499
Query 1734 TCTTAGGAAACTCATACTTCCTTTCTACTCCTTCACTTTGTTCTGCATAATCCTTCCACT 1793
||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
Sbjct 1500 TCTAAGGAAACTCATACTTCCTTTCTACTCCTTCACATTGTTCTGCGTAATCCTTCCAAT 1559
Query 1794 CACCATGTTTGTTCCAGAAGCTGAGCTCCCTGTTTGGGTCATCTGCTACATACCAGTT-T 1852
||||||||| ||||||||||| ||||| |||||||||||||||||||| |||| | | |
Sbjct 1560 CACCATGTTCGTTCCAGAAGCCGAGCTTCCTGTTTGGGTCATCTGCTATGTACC-GATAT 1618
Query 1853 TCATGTCTTTCCTCAACCTTCTTCCAT-CTCCAAAATCGTTTCCTTTCATCGTTCCTTAT 1911
||||||| || || ||| ||||||| | ||||||| || || |||||||| || |||||
Sbjct 1619 TCATGTCATTACTGAACATTCTTCC-TGCTCCAAAGTCATTCCCTTTCATTGTCCCTTAC 1677
Query 1912 CTCTTATTCGAGAACACAATGTCTGTCACCAAGTTCAATGCGATGGTGTCCGGATTATTC 1971
||| | || |||||||||||||| |||||||||||||| |||||||| || |||||||||
Sbjct 1678 CTCCTGTTTGAGAACACAATGTCGGTCACCAAGTTCAACGCGATGGTATCTGGATTATTC 1737
Query 1972 CAATTGGGTAGCTCTTACGAGTGGATTGTCACAAAGAAAGCTGGAAGATCATCAGAGTCA 2031
||| | |||||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 1738 CAACTCGGTAGCTCTTACGAATGGATTGTAACAAAGAAAGCAGGAAGATCATCAGAGTCT 1797
Query 2032 GATCTTTTATCTATCACCGAGAAAGAGACACCAACCAAGA----AAAGTCAATTGCTTAG 2087
||||||||| | ||||||| | ||| | |||| |||| ||| ||| | || ||
Sbjct 1798 GATCTTTTAGGTCTCACCGATATAGA-AT-CCAAG-AAGATGGCAAAC-CAAATCCTAAG 1853
Query 2088 GGGAGTTTCCGACAGCGAACTTTTGGAGCTGAGCCAACTTGAAGAACAGAAA---CAAGC 2144
||| |||| ||||| || || |||||| | |||||| | || ||||||||| ||| |
Sbjct 1854 AGGAATTTCAGACAGTGAGCTCTTGGAGATAAGCCAAGTAGAGGAACAGAAAAAACAACC 1913
Query 2145 GGTTTCAAAGAAACCTGTCAAGAAAACCAACAAGATATACCACAAAGAGCTCGCATTGGC 2204
|||||| | || ||||||||||| ||||||| ||||||||||||||| | ||
Sbjct 1914 GGTTTCC--G-----TG--AAGAAAACCAATAAGATATTCCACAAAGAGCTCGCGCTAGC 1964
Query 2205 CTTTCTTTTGCTCACTGCAGC-GCTTAGGAGTCTCTTGGCAGCACAAGGAGTGCATTTCT 2263
|||||||||||||| ||||| | |||||||||||||||| ||||||||||||||||||
Sbjct 1965 TTTTCTTTTGCTCACCGCAGCAG-TTAGGAGTCTCTTGGCCTCACAAGGAGTGCATTTCT 2023
Query 2264 ACTTCCTGTTATTCCAAGGTGTTACCTTTCTTCTTGTGGGTCTCGATCTCATAGGCGAGC 2323
|||||||||| ||||||||| | |||||||||||||| ||||||||||||||||||||||
Sbjct 2024 ACTTCCTGTTGTTCCAAGGTCTCACCTTTCTTCTTGTTGGTCTCGATCTCATAGGCGAGC 2083
Query 2324 AGATGAGCTGAGAAGAACAAAAGAAGA 2350
||||||| | |||| | |||| |||||
Sbjct 2084 AGATGAGGTAAGAA-ACCAAA-GAAGA 2108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102500849295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5