BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31600.1
Length=1546
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491578 jgi|Araly1|491578|fgenesh2_kg.7__1011__AT4G31600.1 2034 0.0
> Ahg491578 jgi|Araly1|491578|fgenesh2_kg.7__1011__AT4G31600.1
Length=1506
Score = 2034 bits (1101), Expect = 0.0
Identities = 1402/1538 (91%), Gaps = 57/1538 (4%)
Strand=Plus/Plus
Query 33 AACCTCGCTTAAGAACTAAGATCCTCAATCCAAGGGaaaa-aaaCTGTAAA-TTGAAATG 90
|||||||||| |||| ||||||||||||||||| |||||| |||||||||| ||||||||
Sbjct 1 AACCTCGCTTCAGAAGTAAGATCCTCAATCCAA-GGAAAAGAAACTGTAAATTTGAAATG 59
Query 91 AAAATCTGATAAAGAAGTAATTTTTAATCGCTCTTTCTTCTCGAAATGCGTC-TAAATCA 149
|||||| | || | | || ||||||||| |||||||||||||| | |||||
Sbjct 60 AAAATC---T----AA-T-A-----AA-CGCTCTTTCCTCTCGAAATGCGTCTTGAATCA 104
Query 150 CGTTGAATCTGCCAAG-AAACGTGTACCCTGAGA-GGAATT--TTCCAAAGATT-TAT-A 203
||||||||| ||| | || | || | ||| || || | | | || ||
Sbjct 105 CGTTGAATCCGCC-TGTTAA-TTTTA--C--AGATTTCTTTGATTTC-ACG-TTGAATCC 156
Query 204 ACTCAA-A-T-CACTCTT--CTTTCCCCATGGAGGTTCAAGCTGAAATGGAGCCTACCTC 258
|| ||| | | | | || |||| ||||||||||||||||||||||||||||||| |||
Sbjct 157 AC-CAATACTGTA-TATTCCCTTT-CCCATGGAGGTTCAAGCTGAAATGGAGCCTAGCTC 213
Query 259 GTCCATTAGTTTAGTCGCAGCTGTTTCATATGGCATTGCTTCAATGGCAATGGTTTTTAT 318
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 214 GTCCATTAGTTTAGTCGCAGCTGTTTCGTATGGCATTGCTTCAATGGCAATGGTTTTTAT 273
Query 319 CAACAAGGCTGTGATTATGCAGTATCCACATTCCATGACTGTTCTTACTCTTCAGCAATT 378
|||||| |||||||||||||||||||||||||| |||||| ||||||| |||||||||||
Sbjct 274 CAACAAAGCTGTGATTATGCAGTATCCACATTCAATGACTCTTCTTACCCTTCAGCAATT 333
Query 379 GGCTACTTCTTTGCTTATACACTTTGGTAGACGAATGGGATACACAAGAGCTAAAGGAAT 438
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 GGCGACTTCTTTGCTTATACACTTTGGTAGACGAATGGGATACACAAGAGCTAAAGGAAT 393
Query 439 TGATATGGCTACGGCCAAAAAGCTTCTTCCGGTTTCTATCTTCTACAATGCTAATGTTGC 498
||| ||||||| || ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 394 CGATTTGGCTACTGCAAAAAAGCTTCTTCCGGTGTCCATCTTCTACAATGCTAATGTTGC 453
Query 499 ATTTGCTCTTGCAAGTTTGAAAGGAGTAAACATTCCAATGTATATCGCCATTAAGAGACT 558
||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 454 ATTTGCTCTTGCAAGCTTGAAAGGAGTCAATATTCCAATGTATATCGCCATTAAGAGACT 513
Query 559 CACTCCACTTGCTGTTTTGATTTCTGGGGTTTTGTTTGGTAAAGGCAAACCAACAACTCA 618
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 514 CACTCCACTCGCTGTTTTGATTGCTGGGGTTTTGTTTGGTAAAGGCAAACCAACAACTCA 573
Query 619 GGTTGCTCTATCTGTACTACTTACCGCTGCAGGCTGTGTAATTGCAGCTCTTGGTGAttt 678
||||||||||||||||||||| || |||||||| || |||||||||||||||||||||||
Sbjct 574 GGTTGCTCTATCTGTACTACTGACGGCTGCAGGTTGCGTAATTGCAGCTCTTGGTGATTT 633
Query 679 ttcttttgatctttttgggtatggtttggctttaacatctgtctttttCCAGACTATGTA 738
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 634 TTCTTTTGATCTTTTCGGGTATGGTTTGGCTTTGACATCTGTCTTTTTCCAGACCATGTA 693
Query 739 CCTTGTGCTGGTGGAGAAGTCTGGTGCAGAAGACGGGCTTTCCTCCATCGAGATAATGTT 798
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 694 CCTTGTGCTGGTGGAGAAGTCTGGTGCAGAAGACGGGCTTTCCTCTATCGAAATAATGTT 753
Query 799 CTATAACAGCTTCCTTTCTCTCCCATTTTTGTCCATCCTCATCATAGTTACCGGCGAATT 858
||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 754 CTATAACAGCTTCATTTCCCTCCCATTTTTGTCCTTCCTCATCATAGTTACCGGCGAATT 813
Query 859 CCCAAACTCTCTATCACTATTACTTGCAAAGTGTTCTTATTTGCCGTTCTTGGTGATTCT 918
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 TCCAAACTCTCTATCACTATTACTTGCAAAGTGTTCTTATTTGCCGTTCTTGGTGATTCT 873
Query 919 CATTCTTTCACTGGTTATGGGCATTGTCCTCAACTTCACCATGTTTCTTTGCACCATTGT 978
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 CGTGCTTTCACTGGTTATGGGCATTGTCCTCAACTTCACCATGTTTCTTTGCACCATTGT 933
Query 979 GAACTCTGCACTAACAACAACCATCGTTGGTGTTCTCAAAGGCGTTGGTTCCACTACGCT 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 GAACTCTGCACTAACAACAACCATCGTTGGTGTTCTCAAAGGCGTTGGTTCCACTACGCT 993
Query 1039 CGGTTTTGTCCTCTTGGGTGGTGTTGAAGTACATGCTTTGAACGTGTCCGGTTTAGTGGT 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 CGGTTTTGTCCTCTTGGGTGGTGTTGAAGTACATGCTTTGAACGTGTCCGGTTTAGTGGT 1053
Query 1099 CAACACAGCTGGTGGTGTGTGGTACTCATATGCCAAGTACCGACAGAAAAAGGCTAAACC 1158
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1054 CAACACAGCTGGTGGTGTGTGGTACTCATACGCCAAGTACCGACAGAAAAAGGCTAAACC 1113
Query 1159 GGCTAAGCTAATGTCTGATTTGGAAGCTCACAAAAAATGAGAATTTCGGTCCGGTTTGGT 1218
||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||
Sbjct 1114 GGCTAAGCTAATGTCTGATTTGGAAGCTCACAAGAAATGAAAATTTCGGTCTGGTTTGGT 1173
Query 1219 TT-CGTTTGGGAAGGCATTACCCCGGTTTATAGACTTTGCCACTCAAA-TCAATGATCAG 1276
|| | ||| ||||||||| | |||||| ||| ||||| ||||||||| | |||||||||
Sbjct 1174 TTTCTTTTTGGAAGGCAT-AGTCCGGTTCATAAACTTTTCCACTCAAACT-AATGATCAG 1231
Query 1277 AACGAACCGATGTATTTGAGAGTTGAACCAGGAAAATCGGTCCTAGAGTGAGATTTAATT 1336
|||||||||||||||| ||||||||||||| |||||||| | ||||||||||||||||||
Sbjct 1232 AACGAACCGATGTATTAGAGAGTTGAACCAAGAAAATCGATTCTAGAGTGAGATTTAATT 1291
Query 1337 TTGATGTGAAACTTCATTGATCAG-TTAATTTCTCGTTTAGGTTAAGaaaaaaaaaaaaT 1395
||||| |||||||||||||||||| ||| ||| | ||||| ||||||||| ||||||| |
Sbjct 1292 TTGATATGAAACTTCATTGATCAGATTA-TTTATTGTTTAAGTTAAGAAAGAAAAAAA-T 1349
Query 1396 CAATACCTATTTTTATATGTAGATGCAATCATGCTAATGTATAATTGTTAAGTTGTGGCT 1455
|||||||||||||||||||||||||||||||| | || ||| ||| || |||||||||||
Sbjct 1350 CAATACCTATTTTTATATGTAGATGCAATCATTCAAAAGTAAAATAGTAAAGTTGTGGCT 1409
Query 1456 GTAGCATAACCATATTAAACATTAGACATGTGTTG--G----TATCAACTATCAACTA-T 1508
||||||||||||||||||||||||||||||||||| | ||||||||||||| || |
Sbjct 1410 GTAGCATAACCATATTAAACATTAGACATGTGTTGTTGCAACTATCAACTATCAA-TAGT 1468
Query 1509 C-AAGAACACATGAAATGTTTGTTCTATTTAATGGTGG 1545
||||||||||||||||||||||||||||||||||||
Sbjct 1469 TGAAGAACACATGAAATGTTTGTTCTATTTAATGGTGG 1506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57897172400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5