BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31610.1
Length=1999
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491577 jgi|Araly1|491577|fgenesh2_kg.7__1010__AT4G31610.1 1997 0.0
Ahg944631 jgi|Araly1|944631|scaffold_700860.1 340 2e-92
> Ahg491577 jgi|Araly1|491577|fgenesh2_kg.7__1010__AT4G31610.1
Length=1873
Score = 1997 bits (1081), Expect = 0.0
Identities = 1421/1576 (90%), Gaps = 60/1576 (4%)
Strand=Plus/Plus
Query 12 TTAACCAATGTGAAAGATTCACATCACCTTTTTCGATTTTTAATAGATTCGGTTTTACCT 71
|||||||||||||||||||||| ||| |||||||| ||||||||||||||| |||| ||
Sbjct 1 TTAACCAATGTGAAAGATTCACGTCAACTTTTTCG-GTTTTAATAGATTCGG-TTTAACT 58
Query 72 TCTCGTAACGTAA-TTCTAAGAAAAGAAAACGTCAATCATATTTACTAGGAAAGATA-A- 128
| | ||||||||| || ||||||||||||| ||| ||||| ||| ||||| |||| | |
Sbjct 59 T-TTGTAACGTAATTTATAAGAAAAGAAAAGGTC-ATCAT-TTT-CTAGG-AAGAAAGAG 113
Query 129 TTATAATT--TAT-TGCTTTTTCTCTCACTCTCTGACCTGAAATCTCCTAC-TGAGATTT 184
|| | ||| | | | |||||||||||||||||| |||||||| | || | ||||||||
Sbjct 114 TT-TCATTGCTCTCTTTTTTTTCTCTCACTCTCTGCCCTGAAATTTTCT-CTTGAGATTT 171
Query 185 TTGAAGTGTATTCAACAATGGCGGATCCACCACATTTCTCTCTGTTTCAGCAAAAATTTC 244
||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 172 TTGAAGTGTATTCTACAATGGAAGATCCACCACATTTCTCTCTGTTTCAGCACAAATTTC 231
Query 245 GTACCGGAGACAAACCATTTCTCACTCTTGATGCTGACTTCTTAATGAATCACACGAAAG 304
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 AAACCGGAGACAAACCACTTCTCACTCTTGATGCTGACTTCTTAATGAATCACACGAAAG 291
Query 305 TGTTACTAAAATCGGATGCTTCAGACAAAGTTTGGAAAGTGAAACTGGACGGCGGTAGGC 364
| || |||||||||||||| ||||||| | | ||||||||||| |||||||||| ||||
Sbjct 292 TCTTGCTAAAATCGGATGCGTCAGACAGACCTCGGAAAGTGAAATTGGACGGCGGCAGGC 351
Query 365 TCTCCGAAGGCTGGGAAGAGTTCGCCTGCGACCAGAAATTCAGAGACGGTGACGTTTTGG 424
||||||| |||||||||||||||||| ||||||| ||||||| |||||||||||||||||
Sbjct 352 TCTCCGACGGCTGGGAAGAGTTCGCCGGCGACCATAAATTCAAAGACGGTGACGTTTTGG 411
Query 425 TTTTCAAACATCATGGAGACGAGGTCTTTCATGTAGCTGTGGTGTCCCCATCTGTTTCCG 484
|||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct 412 TTTTCAAACATCATGGAGACGAGGTCTTTC----A-------TGT----ATCTGTTTCCG 456
Query 485 GCGACATAC-GTAACGCATCTTCTAGCCAAGTT-ATTACGGAAGATACTTATATtgatgt 542
||||||||| | ||||||||||||||||| ||| | ||| || |||||||| |||||||
Sbjct 457 GCGACATACAG-AACGCATCTTCTAGCCACGTTGA-TACTGAGGATACTTACATTGATGA 514
Query 543 tgacgatgttgatgatgatgattatggacaagacgacgaagatgatgatgatgatgatga 602
||| ||| |||||| | || || || |||||||||| |||||||||
Sbjct 515 TGAGGATCTTGATG-T--TG---AT------------GATGATGATGATGTTGATGATGA 556
Query 603 tgaGGGCGAGGATAATATAGAGAACATATCGGAGAAGACGGATAAAAGACAAGAAGCAGA 662
|||||||||||||||| |||||||||||| ||| ||||| |||||| ||||||||||||
Sbjct 557 TGAGGGCGAGGATAATTTAGAGAACATATTGGAAAAGACAAATAAAAAACAAGAAGCAGA 616
Query 663 TTCTTCATCAGACCACTCAGGTTTCATCACAGCACGTGTCACTCGTTATAGCCTCCTTCA 722
|||||||||||| ||| | ||||||||||||||| ||||||||||||| |||||||||||
Sbjct 617 TTCTTCATCAGAACACCCTGGTTTCATCACAGCATGTGTCACTCGTTACAGCCTCCTTCA 676
Query 723 TGACCGTTTGGATCTTTCTAGAAATTTTACGTTGTTGTTTGGTGGGCACCAAAAAACATG 782
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 677 TGATCGTTTGGATCTTTCTAGAAATTTTACGTTGTTGTTTGGTGGGAACCAAAAAACGTG 736
Query 783 TGAGATCGATGTAGTGGATGAGCAAGGGAGAAGATGGACAATGAAACTTGCCAAAAACAT 842
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 737 TGAGATCGATGTAGTGAATGAGCAAGGGAGAAGATGGACAATGAAACTTGCAAAAAACAT 796
Query 843 CTCAAGTGGTGTGTTTTACATCAGACTAGGCTGGGGAAACTTCTGCTGCGCTAATGGGCT 902
|||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||
Sbjct 797 CTCAAGTGGTGTGTTTTACATCAGACAAGGCTGGGGAAATTTCTGCTGCGTTAATGGGCT 856
Query 903 AACTCAAGGAGACTTATGTAAGTTTAAACTTTTCCAAAATGAGGAAAGGCCTGTGCTTTG 962
|| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 857 AAGTCAAGGAGAGTTATGTAAGTTTAAACTTTTCCAAAATGGGGAAAGGCCTGTGCTTTG 916
Query 963 GTTGTGTCCACAGGAATCTGGCAATGGCCGTAAAGAGAAGAGGACGTTTGATGAAGTTTC 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 GTTGTGTCCACAGGAATCTGGCAATGGCCGTAAAGAGAAGAGGACGTTTGATGAAGTTTC 976
Query 1023 CAAAGGAAAGGAGAAGAAGACCCCTTCACCATTTCTGATAGTAAAGTATACACCTAGCCG 1082
||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 977 CAAGGGAAAGGAGAAGAAGACTCCTTCTCCATTTCTGATAGTAAAGTATACACCTAGCCG 1036
Query 1083 TGAGACTACCGGGCAACTATCACTTCCAGTGAGTTTCACGAGGAACAATAGCATTAATAA 1142
||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||
Sbjct 1037 TGACACTACCGGGCAACTATCACTTCCAGTGAGTTTCACGAGGAAGAATAACATTAACAA 1096
Query 1143 GACTGGGGAGGTAATTCTGCTGAACCAAGATGGAAGAAAGTGGTCATCTTATCTACAGAT 1202
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 GGCTGGGGAGATAATTCTGCTGAACCAAGATGGAAGAAAGTGGTCATCTTATCTACAGAT 1156
Query 1203 AACAGGACTTGGAAGAGGCGCCGGAAGTGAATGGTTTTATTTGAGAAGAGGTTGGAGAGA 1262
||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1157 AACAGGACTTGGACGAGGCG--G-AAGTGAATGGTTTTATTTGAGAAGAGGTTGGAGAGA 1213
Query 1263 GATGTGCGAAGCGAATGGAGTGGGAG-TAAATGATTCTTTCAAGCTGGAACTGGTGTGGG 1321
|||||||||||| ||||||||| || | |||||||| ||||||||||||||| ||||||
Sbjct 1214 GATGTGCGAAGCTAATGGAGTGA-AGGTTAATGATTCATTCAAGCTGGAACTGATGTGGG 1272
Query 1322 AAGGAGCTAATCCTATGTTTAAGTTCTGCTCCAAGATTGAAAACCATGAATACAAGGGAA 1381
||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1273 AAGGAGCAAATCCTGTGTTTAAGTTCTGCTCTAAGATTGAAAACCATGAATACAAGGGAA 1332
Query 1382 AAGGAAACCAAAGAACTCGTAAGAAGAGAGCTTGTGAGACTGCTCCACAGCCAAGGAATG 1441
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1333 AAGGAAACCAAAGAACTCGTAAGAAGAGAGCTTGTGAGACTGATCCACAGCCAAGGAATG 1392
Query 1442 TGAAAAAGACTCCAAGATTAGGAGTAGAGGGACCAGTGTATCAAGTTGATGAGGAGAGAG 1501
||||||||||||||||| |||||||||||||||||| | ||||| ||||||||| |||||
Sbjct 1393 TGAAAAAGACTCCAAGAGTAGGAGTAGAGGGACCAGAGCATCAAATTGATGAGGCGAGAG 1452
Query 1502 GACACACTCAGGTTTCAAACAGAACCAACACCATCTCAGGA-AATTTACAGCGCTTGCTA 1560
||| |||||||||||||||||||||||||||||| ||| || |||| |||||||||||||
Sbjct 1453 GACGCACTCAGGTTTCAAACAGAACCAACACCATTTCAAGAGAATT-ACAGCGCTTGCTA 1511
Query 1561 CCACCATCGTGCTCAG 1576
|||| ||| |||||||
Sbjct 1512 CCACGATCTTGCTCAG 1527
Score = 394 bits (213), Expect = 1e-108
Identities = 326/374 (87%), Gaps = 34/374 (9%)
Strand=Plus/Plus
Query 1606 GGCATTGTAGATAGTCTGAACACTGTGAGACAATGTCGGACTGAGCTTGAGACAAGTGAA 1665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1527 GGCATTGTAGATAGTCTGAACACTGTGAGACAATGTCGGACTGAGCTTGAGACAAGTGAA 1586
Query 1666 CAAAATCTGCAAGCCTCTTTGCTAGCAATTGACGCCTTAGGGGAGAGGATATGGGGAATC 1725
|| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1587 CAGAATCTGCAAGCCTCTTTGCTAGCAATTGAAGCCTTAGGGGAGAGGATCTGGGGAATC 1646
Query 1726 AGCAAAATCCTCAGCAGTAATCTGGTTTGAAGTGAGACTGAAGATGGGGAAAGAAACAAA 1785
|||||||||||||||| ||||||||||||||| | || | || |||||||||||
Sbjct 1647 AGCAAAATCCTCAGCAATAATCTGGTTTGAAG--A---TG--G--GGA-AAAGAAACAAA 1696
Query 1786 GAGTGATTTTCACTAAACTAGGTTTATTCTGTATTTGAGACTTGCAAGTTTTAGAGACTG 1845
|||| | | | | |||||||||||||||||||||||||||||||||||
Sbjct 1697 GAGT------C--T----T---T--ATTCTGTATTTGAGACTTGCAAGTTTTAGAGACTG 1739
Query 1846 T--ACTT-AA--AA-GTTTGTAGTTTGGAAGGGCCTTCTTCAGTTGTATCAGCAATTTGG 1899
| |||| || || |||| |||||||||||||| |||||| ||||||||||||| ||||
Sbjct 1740 TCCACTTGAATGAAAGTTTCTAGTTTGGAAGGGCGTTCTTCGGTTGTATCAGCAACTTGG 1799
Query 1900 ACTACTTCACTATATCGCTGAGAAACTAGTAATATT-GTAATGCATTGTGAGTTTCAACT 1958
| ||||||| |||||||||||||||||||||||||| ||||||| || |||||| |||||
Sbjct 1800 AGTACTTCATTATATCGCTGAGAAACTAGTAATATTTGTAATGCTTTCTGAGTTACAACT 1859
Query 1959 TTTGTTGTATTAGT 1972
||||||||||||||
Sbjct 1860 TTTGTTGTATTAGT 1873
> Ahg944631 jgi|Araly1|944631|scaffold_700860.1
Length=1966
Score = 340 bits (184), Expect = 2e-92
Identities = 208/219 (95%), Gaps = 3/219 (1%)
Strand=Plus/Plus
Query 1066 AAGTATACACCTAGCCGTGAGACTACCGGGCAACTATCACTTCCAGTGAGTTTCACGAGG 1125
||| |||||||||||||||| | |||||||||||||||||||||| ||||||||||||||
Sbjct 1605 AAGAATACACCTAGCCGTGAAAGTACCGGGCAACTATCACTTCCAATGAGTTTCACGAGG 1664
Query 1126 AACAATAGCATTAATAAGACTGGGGAGGTAATTCTGCTGAACCAAGATGGAAGAAAGTGG 1185
|| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 AAGAATAACATTAATAAGGCTGGGGAGGTAATTCTGCTGAACCAAGATGGAAGAAAGTGG 1724
Query 1186 TCATCTTATCTACAGATAACAGGACTTGGAAGAGGCGCCGGAAGTGAATGGTTTTATTTG 1245
|||||||||||||||||||||||||||||| ||| | | |||||||||||||||||||||
Sbjct 1725 TCATCTTATCTACAGATAACAGGACTTGGACGAG-C-C-GGAAGTGAATGGTTTTATTTG 1781
Query 1246 AGAAGAGGTTGGAGAGAGATGTGCGAAGCGAATGGAGTG 1284
|||||||||||||||||||||||||||||||||||||||
Sbjct 1782 AGAAGAGGTTGGAGAGAGATGTGCGAAGCGAATGGAGTG 1820
Score = 303 bits (164), Expect = 2e-81
Identities = 214/239 (90%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 809 GGAGAAGATGGACAATGAAACTTGCCAAAAACATCTCAAGTGGTGTGTTTTACATCAGAC 868
|||||||||||||||| |||||||| |||||||||||||||| ||| |||||||||||||
Sbjct 1378 GGAGAAGATGGACAATTAAACTTGCAAAAAACATCTCAAGTGCTGTATTTTACATCAGAC 1437
Query 869 TAGGCTGGGGAAACTTCTGCTGCGCTAATGGGCTAACTCAAGGAGACTTATGTAAGTTTA 928
||||||||| |||| |||||| || ||||||||||| | ||||||| |||||||||||||
Sbjct 1438 TAGGCTGGGAAAACGTCTGCTCCGTTAATGGGCTAAGTGAAGGAGAGTTATGTAAGTTTA 1497
Query 929 AACTTTTCCAAAATGAGGAAAGGCCTGTGCTTTGGTTGTGTCCACAGGAATCTGGCAATG 988
||||||||||||||| |||||| |||||||||||| |||||||| |||| |||||| ||
Sbjct 1498 AACTTTTCCAAAATGGGGAAAGACCTGTGCTTTGGCTGTGTCCAGGGGAACCTGGCATTG 1557
Query 989 GCCGTAAAGAGAAGAGGACGTTTGATGAAGTTTCCAAAGGAAAGGAGAAGAAGACCCCT 1047
||| ||| ||||||||||||| |||||||||||||| |||||||||||||| || |||
Sbjct 1558 GCCACAAACAGAAGAGGACGTTGGATGAAGTTTCCAAGGGAAAGGAGAAGAATACACCT 1616
Score = 158 bits (85), Expect = 2e-37
Identities = 95/100 (95%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 1375 AAGGGAAAAGGAAACCAAAGAACTCGTAAGAAGAGAGCTTGTGAGACTGCTCCACAGCCA 1434
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1821 AAGGGAAAAGGAAACCAAAGCACTCGTAAGAAGAGAGCTTGTGAGACTGCTCCTCAGCCA 1880
Query 1435 AGGAATGTGAAAAAGACTCCAAGATTAGGAGTAGAGGGAC 1474
| ||||||||||||| |||||||| |||||||||||||||
Sbjct 1881 AAGAATGTGAAAAAGGCTCCAAGAGTAGGAGTAGAGGGAC 1920
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75152053385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5