BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31615.1
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353664 jgi|Araly1|353664|fgenesh1_pg.C_scaffold_7000837 2063 0.0
Ahg944634 jgi|Araly1|944634|scaffold_700863.1 178 1e-43
> Ahg353664 jgi|Araly1|353664|fgenesh1_pg.C_scaffold_7000837
Length=2739
Score = 2063 bits (1117), Expect = 0.0
Identities = 1301/1389 (94%), Gaps = 15/1389 (1%)
Strand=Plus/Plus
Query 79 ATGATTCCTGCTGAGtttttttCGACTTACGTGGAAGGTAAAAACCACCAGTCTACAAAA 138
|||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||
Sbjct 1363 ATGATTCCTGCTGAGTTTTTTTCGACTTACGTAGAAGGT-AAAA--ACCAGTCTACAAAA 1419
Query 139 CTGAAACTGACCTCGGACGCTTTCGATAGAACCTGGGAAGTGAAATTGAACGGCCGCAGA 198
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1420 CTGAAACTGACCTCGGACGCTTTGGATAGAACCTGGGAAGTGAAATTGAACGGCCGCAGA 1479
Query 199 TTCGCCGGCGGCTGGGAAAATTTCTCCACCGTACACTCTCTCCAAGATGACGACGTTGTG 258
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1480 TTCGCCCGCGGCTGGGAAAATTTCTCCACCGTACACTCTCTCCAAGACGACGACGTTTTG 1539
Query 259 ATTTTCAGGGAAATCGGGGACATGACCTTTCACGTCACAGCCTCCGGTCGCAGTTTCTGT 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1540 ATTTTCAGGGAAATCGGGGACATGACCTTTCACGTCACAGCCTCCGGTCGCAGTTTCTGT 1599
Query 319 AAGTTACAGTACATATCCTCTGACGAAGATAGGGCTGATGAAGATGATGCATGGAACGTG 378
||| |||||||||||||||||||||| ||| |||||||||||||||||||||||| || |
Sbjct 1600 AAGGTACAGTACATATCCTCTGACGAGGATGGGGCTGATGAAGATGATGCATGGACCGAG 1659
Query 379 TATTCAGATTCCAAGAACATTGTGTCGAAGAAGAAGCCAAGAACAGAAGCAGAGTCTTCA 438
|||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1660 TATTCAGATTCCAAAAACATTGCGTCGAAGAAGAAGCCAAGAACAGAAGCAAAGTCTTCA 1719
Query 439 TCCAAAAACTATTATCTTGTTGCGCATGTCACGCCTTCGAACCTAAGCCGAGATAGATTG 498
|||||||||| ||||||||||||||| |||||| |||| |||||||||||||||||||||
Sbjct 1720 TCCAAAAACTCTTATCTTGTTGCGCACGTCACGTCTTCAAACCTAAGCCGAGATAGATTG 1779
Query 499 TATCTTATAAAGGCTTTTGCGAGGTCAAATGGCCTGAACGAGAGATGCTGTGAGATTGAT 558
| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1780 TCTCTTATAAAGGGTTTTGCGAGGTCAAATGGCCTGAACCAGAGATGCTGTGAGATTGAT 1839
Query 559 CTAATGAATAAACATGGAAAATCATGGACACTTGGTCTGAGATACAGTACAGTCAA-TGA 617
||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||| |||
Sbjct 1840 CTAATGAATCAACATGGAAAATCATGGACAGTTGGTCTGAGATACAGTACAG-CAAATGA 1898
Query 618 TCAGGCTAGTATCAGTGGAGGCTGGAGAGACTTCTGCTTAGTAAATGGGCTAGAAGCTGG 677
||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1899 GCAGGCTAGTATTAGTGGAGGCTGGAGAGACTTCTGCTTAGCAAATGGGTTAGAAGCTGG 1958
Query 678 ATCATTCTACAGGTTTAAGCTTGTCCAAAACGGGGAAAGGCCTTTACTACGGTTGTGTTA 737
||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1959 ATCTTTCTACAGGTTTAAGCTTGTCCAAAACGGGGCAAGGCCTTTGCTACGGTTGTGTTC 2018
Query 738 CGACACTATTCCAGAAGAAGACTGTTACAAAGGAAACAGAAAAGTTAATCTTT-CAGAGA 796
||| |||||||||||||||||||||||||||||||||||||| | ||| ||| ||||||
Sbjct 2019 CGAAACTATTCCAGAAGAAGACTGTTACAAAGGAAACAGAAAGGA-AATTTTTTCAGAGA 2077
Query 797 GTGCTTCAATGAAGCAGGGCAAGTTTCTGACAATGACCTTTAAGCCTTACATGCTCAAGT 856
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 2078 GTGCTTCAATGAAGCAGAGCAAGTTTTTGACAATGACCTTTAAGCCTTACATGCTCAAGT 2137
Query 857 CAGGTCAACTTCGTCTCTCGAGACCCTTTGCAATAGAGAATGAAATAAAGGAGGCAGAGG 916
|||||||||||| | | |||||||||||||| |||||||||||||| ||||| ||||| |
Sbjct 2138 CAGGTCAACTTCATATTTCGAGACCCTTTGCTATAGAGAATGAAATTAAGGAAGCAGAAG 2197
Query 917 ATATAACACTAGTGGACAAAAATGGAGGAAACTGGCCATCCTATGTAGCTTCTGGCGATG 976
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2198 ATATAACTCTAGTGGACAAAAATGGAGGAAACTGGCCATCCTATGTAGCTTCTGGTGATG 2257
Query 977 GTCAAGGAGGAAAGTATTATTTGGCAAAAGGTTGGAGAAGTTTTTGTGCAGCCAATAGGT 1036
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2258 GTCAAGGAGGAAAGTATTATTTGGCAAAAGGTTGGAGAGGTTTTTGTGCAGCCAATAGGT 2317
Query 1037 TAAAGACGGGAGAGACCTTCACGTTGGAGTTTGTTCGAGGAGAAGGCACAACTCCAATGC 1096
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2318 TAAAGACGGGAGAGACCTTCACGTTGGAGTTTGTTCGAGGAGAAAGCACAACTCCAATGC 2377
Query 1097 TAAAGTTCTGCTCCAAGTCCAAGGACAAGATAGAACAAGTACCATTTGATGAAGGAGGGG 1156
| ||||||||||||||| ||||| | |||||||||||||||| ||||||| | | |
Sbjct 2378 TCAAGTTCTGCTCCAAGACCAAG-A-----TAGAACAAGTACCATTAGATGAAGAAAGAG 2431
Query 1157 AGACTCAAGAAGAAACAGAGACTAGGGTCAAAAAGAGAGCTCGAGTTTCTGCAGAAAGAG 1216
|||||||||||||||| |||||| ||||| |||||||||||||||||||||||| | |||
Sbjct 2432 AGACTCAAGAAGAAACGGAGACTCGGGTCGAAAAGAGAGCTCGAGTTTCTGCAGGAGGAG 2491
Query 1217 GATCTTCTCGCCGCAATCAGGCATCAAATAAACCCAATGCTGATCCACAAAACTTGCAGC 1276
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 2492 GATCTTCACGCCGCAATCAGGCATCAAACAAACCCAATGCTGATCCACAAAACTTGAAGC 2551
Query 1277 CTGGGCAACCACATTGCTCAATCTCTGATCAAGTGCAAAAGGTGAAACAGATTATTGTTG 1336
|| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 2552 CTAGGCAACCACCTTGCTCAATCTCTGATCGAGTGCAAAAGGTGAAACAGATTATTGAGG 2611
Query 1337 ACACTTTAACCGGGATAAAACGGATTCGGTCAGAGCTAGAAAG-AAAGGGACAAAAGTTA 1395
|||||||||||||| |||||||||||||||||||||| ||| | ||||| ||| || |||
Sbjct 2612 ACACTTTAACCGGGGTAAAACGGATTCGGTCAGAGCTTGAA-GTAAAGGAACAGAATTTA 2670
Query 1396 GAAGCTTCGATACTGGAAATTGATGCTTTAGGGGAGAAAGTGTCGGAAATCAACAAAATC 1455
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2671 GAAGCTTCGATATTGGAAATTGATGCTTTAGGGGAGAAAGTGTTGGAAATCAACAAAATC 2730
Query 1456 CTCAAGTAA 1464
|||||||||
Sbjct 2731 CTCAAGTAA 2739
> Ahg944634 jgi|Araly1|944634|scaffold_700863.1
Length=296
Score = 178 bits (96), Expect = 1e-43
Identities = 139/159 (87%), Gaps = 6/159 (4%)
Strand=Plus/Plus
Query 1175 AGACTAGGGTCAAAAAGAGAGCTCGAGTTTCTGCAGAAAGAGGATCTTCTCGCCGCAATC 1234
||||| |||| |||||||||||| | |||| ||||| ||||||| ||||||||| |||
Sbjct 143 AGACTCTGGTCGAAAAGAGAGCTCTACTTTCCACAGAAGGAGGATCCTCTCGCCGCCATC 202
Query 1235 AGGCATCAAATAAACCCAATGCTGATCCACAAAACTTGCAGC-CTGGGCAACCACATTGC 1293
|||||||||| ||||||||||||||||||||||||||||| | | || ||||||| |
Sbjct 203 AGGCATCAAACAAACCCAATGCTGATCCACAAAACTTGCACCGCAGG-CAACCAC----C 257
Query 1294 TCAATCTCTGATCAAGTGCAAAAGGTGAAACAGATTATT 1332
|||||||||||||||||| ||||||||||||||||||||
Sbjct 258 TCAATCTCTGATCAAGTGAAAAAGGTGAAACAGATTATT 296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54773772310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5