BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31630.1
Length=1539
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491574 jgi|Araly1|491574|fgenesh2_kg.7__1007__AT4G31630.1 1046 0.0
> Ahg491574 jgi|Araly1|491574|fgenesh2_kg.7__1007__AT4G31630.1
Length=966
Score = 1046 bits (566), Expect = 0.0
Identities = 651/693 (94%), Gaps = 2/693 (0%)
Strand=Plus/Plus
Query 450 AATTTCGTCGAAGAAGAGAGCAAGAAAAGAAACAGAGTCTTCATCAGACAAATCTTATCT 509
||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||
Sbjct 90 AATTTCGTCGAAGAAGAGAGCGAGAACAGAAACAGAGTCTTCATCAGACAGATCTTATCT 149
Query 510 TGTTGCACACGTCACACCTTCAAGCCTACTCCGAGATAATATGTGTGTTTTAAGCAAATT 569
| ||||||| ||||||||||||||||||| |||||||| ||||||| |||||||||||||
Sbjct 150 TCTTGCACATGTCACACCTTCAAGCCTACGCCGAGATATTATGTGTCTTTTAAGCAAATT 209
Query 570 TGCAAGGTCAAATGGTCTGGACAGGAGAGAGTGTGAGATTGATCTGAGGGATGAACATGA 629
||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||
Sbjct 210 TGCAAGGTCAAATGGTCTGGACAGGAGAGAGTGCGAGATTGATCTTATAGATGAACATGA 269
Query 630 AAAATCTTGGACTCTGCTT-TTGAGACACAACaaaaaaaCTGGTCAGGCTTTTATGCGTG 688
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 270 AAAATCTTGGACTCTGCTTCTT-AGACACAACAAAAAAACTGGTCAGGCTTTTATGCGTG 328
Query 689 GAGGATGGAGAAGTTTTTGTCGTAATAACGGGATCAAAGCTGGATCTATCTGTAGGTTTA 748
|||||||||||||||| |||||||| |||||||||||||| |||||| ||||||||||||
Sbjct 329 GAGGATGGAGAAGTTTCTGTCGTAACAACGGGATCAAAGCCGGATCTTTCTGTAGGTTTA 388
Query 749 AGCTTGTCCAAAGCGGAATAAAACCTGTGCTACAGCTGTGTCCCAACGCCTCTAGCATTC 808
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 AGCTTGTCCAAAGTGGAATAAAACCTGTGCTACAGCTGTGTCCCAACGCCTCTAGCATTC 448
Query 809 CAGAAGGAAACTCTTCCAAAGCAAGaaaaaaaCGAAATGTTTCTGAAATTGAAGGTGATG 868
||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||
Sbjct 449 CAGAAGGAAACTCTTCCAAAGCAAGCAAAAAACGGAATGTTTCTGAAAGTGAAGGTGATG 508
Query 869 AGATAGAATCTGAGAATTGCTCAGAGACTATTCCATTGAATCAGAACAAGATTCTGACGT 928
|||| ||||||||| |||||||||||||| || || ||||||||||||||||| |||| |
Sbjct 509 AGATTGAATCTGAGGATTGCTCAGAGACTGTTGCAATGAATCAGAACAAGATTATGACAT 568
Query 929 TTGATCTTAAACCTTACGTGTTCAGGTCATGTCAATTTTTTCTTCCTGCATCGTTCGCAA 988
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 569 TTGATCTTAAACCTTACGTGTTCAGGTCATGTCAATTTCGTCTTCCTGCATCGTTCGCAA 628
Query 989 GAGAGAACGGGATCGTGGAAGCAGGAGAGGTAACTGTATTGAACAAAGATGGCATAGAGT 1048
||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 629 GAGAGAACGGGATTGTGGAAGCAGGAGAGGTAACTGTATTAAACAAAGATGGCGTAGAGT 688
Query 1049 GGAAGTCGCATCTAGTTAACATCAAGGGACGCGATCAGTTTTACAATAGAGGTTGTCAAG 1108
|||| ||||||||||||||| |||||||||||||||||||||||| |||| |||||||||
Sbjct 689 GGAAATCGCATCTAGTTAACGTCAAGGGACGCGATCAGTTTTACATTAGAAGTTGTCAAG 748
Query 1109 ATTTCTTTGTAGCTAATGGCGTAAAGAATGTTG 1141
||||||||||||| |||||| ||||| | ||||
Sbjct 749 ATTTCTTTGTAGCCAATGGCATAAAGTACGTTG 781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57630540685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5