BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31660.1
Length=1173
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328561 jgi|Araly1|328561|fgenesh1_pm.C_scaffold_7000788 551 4e-156
Ahg944809 jgi|Araly1|944809|scaffold_701038.1 91.6 1e-17
> Ahg328561 jgi|Araly1|328561|fgenesh1_pm.C_scaffold_7000788
Length=1125
Score = 551 bits (298), Expect = 4e-156
Identities = 587/717 (82%), Gaps = 58/717 (8%)
Strand=Plus/Plus
Query 7 ATGGCGGATCCAGTTCTTCAATCTCCGAAAAACTCACATTTCTTCCAGCCACTTCTTCCC 66
|||||||||||||||||||||||| ||| | | |||||||||||||||| |||||||||
Sbjct 1 ATGGCGGATCCAGTTCTTCAATCTACGACATGCCCACATTTCTTCCAGCCTCTTCTTCCC 60
Query 67 GGCTTCGACTCTTACCTTAACATTCCTGTGAA-GTT-TTTCTCAAAACGCA--TACAAGG 122
||||||||||| ||||| ||||||||||| || || || ||| || ||| || || |
Sbjct 61 GGCTTCGACTCCTACCTCAACATTCCTGT-AACCTTCTTCCTC--AA-GCATGTAGAAAG 116
Query 123 AAGAAACGAAGGAAGGACAGTG-GAGC-TAAGAACCGACGCGTCTGAAAAAACTTGGCAA 180
|||||||||| |||||| || || | | ||| | ||||| || || | |||||| ||
Sbjct 117 AAGAAACGAACAAAGGAC--TGCGAACTTGAGATCGGACGCTTCAGATATGACTTGGGAA 174
Query 181 GTTAAGATC-----CAAG-GTCGGAGACTAACAGTG-GGCTGGAAAGAGTTCGCCAGC-G 232
|| |||||| | | |||||||||| || | | ||||||||||| |||| | | |
Sbjct 175 GTGAAGATCGATGGCCGGAGTCGGAGACTCACCG-GAGGCTGGAAAGAATTCGTTA-CAG 232
Query 233 CGCATGATTTCCGAGTTGGGGATATTATCGTTTTCAGACACGAAGGATCTTTGGTATTTC 292
| |||||||| || || || ||||| || |||||||||||||||||| |||||| ||||
Sbjct 233 CACATGATTTTCGTGTCGGCGATATCATTGTTTTCAGACACGAAGGAGATTTGGTGTTTC 292
Query 293 ATGTCACTGCATTGGGACCCAGTTGCTGTGAGATTCAATATGTACCGTCTTG---C-A-- 346
||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
Sbjct 293 ATGTCACTGCATTGGGACCCAGTTGCTGTGAGATTCAATATGTACAGTCTTGCAACGACG 352
Query 347 ATAATC---A-G--G---A-G-A-ACATTAGTAACTTGTCGAT-GAAGCAGAG-CATAAA 392
|||||| | | | | | | |||| || |||||| | || ||| ||||| | | ||
Sbjct 353 ATAATCTTGATGATGATCAGGAAGACATAAGAAACTTGCCAATGGAA-CAGAGTC-TTAA 410
Query 393 AACAGAACT------AGAGTCTTCACTCGACGAAGAC-A--AAG-T--TAACATGGGAAA 440
||||||||| |||| | ||| | ||||| ||| | ||| | ||||||||||||
Sbjct 411 AACAGAACTAGAGGCAGAGCCCTCATTAGACGACGACGATGAAGATGATAACATGGGAAA 470
Query 441 GTTTCCAAGaaaaaaaCATGTGAAGAA-GAGGATTCCTGAAGCAGAAGCCAAGTCTTTTT 499
| ||| ||||| ||||||||| |||| || |||||||||||||||||| ||||||||||
Sbjct 471 GCTTCTGAGAAAGAAACATGTGGAGAAGGA-GATTCCTGAAGCAGAAGCAAAGTCTTTTT 529
Query 500 CATCAGACAAGTCCTGTTTCGTTGCACATGTAACAGATTCTAACTTACGAGAGGATACAC 559
||||||||||||| ||||||||||||||||| |||||||||||| ||||| | |||||||
Sbjct 530 CATCAGACAAGTCTTGTTTCGTTGCACATGTTACAGATTCTAACCTACGAAACGATACAC 589
Query 560 TGTTTCTTCCAAGGAAGTTTGATAGGTCCGATGGTCTGATTAAAGGAAGTAACAAGATTG 619
|||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 590 TGTTTCTTCCAACAAAATTTGTTAGGTCCGATGGTCTGATTAAAGGAAGTAACAAGATTG 649
Query 620 TTCTGATGAATGAAGAAGCAAGGACATGGACGCTTATTCTGAAGTTTAGGAATTCAA 676
|||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 650 TTCTAATGAATGAAGAAATAAGGACATGGACGCTTATTCTGAAGTTTAGGGATTCAA 706
Score = 435 bits (235), Expect = 5e-121
Identities = 322/364 (88%), Gaps = 6/364 (2%)
Strand=Plus/Plus
Query 811 TAAAGAGTGTTTCCACTAAAGAT-TTCAACAAAATAAAGAGAAAGGAATCTGGTGACAGT 869
||||||||||||||||||||||| | | |||| |||||||| |||||||||||||||
Sbjct 710 TAAAGAGTGTTTCCACTAAAGATAGT-AGCAAAGGGAAGAGAAACGAATCTGGTGACAGT 768
Query 870 AGCCAAAAAGTTCCATCATCGTCATCTTCAGTAAGTGAATACCGATTTT-TGACACTAAC 928
|| ||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 769 AGACAAAAGGTTCCATCATCGTCATCTTCAGTAAGTGAATACCG-TTTTGTGACACTAAC 827
Query 929 CGTCACACCAGCCGCTCTCAAAGATGGTAGACTTCGTGTTCCAATCAAATTCATTAAGGG 988
||||| |||||||| ||||||| |||||||||||| | |||||| ||||||||| |||
Sbjct 828 CGTCAGACCAGCCGTTCTCAAAAATGGTAGACTTCATCTTCCAAGGAAATTCATTGAGGT 887
Query 989 TAACCGAATGGAAAACCTAGGAATGAAGAAGATAACTCTGTTGGACAAGCATGGAGTAGA 1048
||||| ||||||||| |||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 888 TAACCAAATGGAAAATATAGGTATGAAGAAGATAACTTTGTTGGACAAGCATGGAGTAGA 947
Query 1049 GTGGCCAGTGAATTTAGTCATGTACAAGGGAAATACACAG-ACGCGATTCGGTTCAGGGT 1107
|||||||||||||||||||||| | |||||||||||| || ||||| || ||||||||||
Sbjct 948 GTGGCCAGTGAATTTAGTCATGGAAAAGGGAAATACA-AGGACGCGTTTGGGTTCAGGGT 1006
Query 1108 TGAAAGAGTTTTTCAAGGCTAATGGCATCGAGGCATGCAAATCTTTTGTGTTGGAGTTGG 1167
||||||| || | ||| |||| |||| | |||||| | |||||||||||||||||||||
Sbjct 1007 TGAAAGAATTCTACAATGCTATTGGCGTTAAGGCATACGAATCTTTTGTGTTGGAGTTGG 1066
Query 1168 TTTG 1171
||||
Sbjct 1067 TTTG 1070
> Ahg944809 jgi|Araly1|944809|scaffold_701038.1
Length=1230
Score = 91.6 bits (49), Expect = 1e-17
Identities = 240/329 (73%), Gaps = 26/329 (8%)
Strand=Plus/Plus
Query 22 CTTCAATCTCC-GAAAAACTCACATTTCTTCCAGCCACTTCTTCCCGGCTTC-GACTCTT 79
||||| ||||| | || | |||||||||||||||||||||||||||| ||| || ||
Sbjct 41 CTTCAGTCTCCGGCCAATC-CACATTTCTTCCAGCCACTTCTTCCCGG-TTCCGAGACTC 98
Query 80 ACCT-TAACATTCCTGTGA-AGTTTTTCTCAAAACGCATACAAGG-AAGAAACGA--AGG 134
|||| | | || ||||| | | || |||||||| | ||| |||| || |||||| ||
Sbjct 99 ACCTCTCA-ATACCTGTTACA-TTCTTCTCAAAGCACATTGAAGGGAA-AAACGAGCAGA 155
Query 135 AAGGACAGTG-GAGCTAAGAACCGACGCGTCTGAAAAAACTTGGCAAGTTAAGATCCAAG 193
|| || | | || || | | | ||||| ||||| | || ||||||||| || || | |
Sbjct 156 AA--ACGGCGAGA-CTTATATCGGACGCTTCTGATAGAATTTGGCAAGTGAAAATGGATG 212
Query 194 GTCGGAGACTAACAGTGGGCTGGAAAGAGTTCGCCAGC-GCGCATGAT-TTCCGAGTTGG 251
| |||||||| || | |||||||||||||| || | | || ||| || ||| | | ||
Sbjct 213 GCCGGAGACTCACTGAAGGCTGGAAAGAGTTTGCAA-CAGCACATAATCTTCAAA-TCGG 270
Query 252 GGATATTATCGTTTTCAGACACGAAGG--ATCTTTGGTATTTCA-TGTCACTGCATTGGG 308
|| || || |||||| |||| |||| | | | | | ||| | ||| || | || ||
Sbjct 271 CGACATCATTATTTTCAAACACCAAGGGGA-CAT-GTTGTTT-AGTGTGACACCTTTCGG 327
Query 309 ACCCAGTTGCTGTGAGATTCAATATGTAC 337
|| ||||||||||| ||||| || ||||
Sbjct 328 TCCTAGTTGCTGTGAAATTCAGTACGTAC 356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43765108716
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5