BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31670.1
Length=2121
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491573 jgi|Araly1|491573|fgenesh2_kg.7__1006__AT4G31670.1 3184 0.0
Ahg481323 jgi|Araly1|481323|fgenesh2_kg.4__383__AT2G24640.1 1125 0.0
> Ahg491573 jgi|Araly1|491573|fgenesh2_kg.7__1006__AT4G31670.1
Length=2013
Score = 3184 bits (1724), Expect = 0.0
Identities = 1951/2054 (95%), Gaps = 41/2054 (2%)
Strand=Plus/Plus
Query 58 AGATCGATGATTTTGAGAAGCGAATTAGATGCATGAGGTTGGTTTTCCGTTGGATCTCTC 117
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGATCGATGATTTCAAGAAGCGAATTAGATGCATGAGGTTGGTTTTCCGTTGGATCTCTC 60
Query 118 TGTCTTCACTCGCCTTATAGCGACTCTATTTTTCCTCGCCGTTGGTGTTTTTTACTTTCT 177
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 TGTCTTCACTCGCCTCATAGCGACTCTATTCTTCCTCGCCGTTGGTGTTTTTTACTTTCT 120
Query 178 CAAAAACACCGCCGCTAAGTACTTCGACATCGGAGCCGCCGCCGCCGGAGGTTTCGACAG 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAAAAACACCGCCGCTAAGTACTTCGACATCGGAGCCGCCGCCGCCGGAGGTTTCGACAG 180
Query 238 GGACTTCATGGCGGTTGATGCTGAGGATTGCTCTGTCTGTGGGAATTTTTCCACCAAGAA 297
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGACTTCATGGCGGTTGATACTGAGGATTGCTCTGTCTGTGGGAATTTTTCCACCAAGAA 240
Query 298 ATGCTCCCGCTGCAAATCCGTTCGATACTGCTCAGCAGAGTGCCAAAGGTCAGATTGGAG 357
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 241 ATGCTCCCGCTGCAAATCCGTTAGATACTGCTCAGCAGAGTGCCAAAGGTCAGACTGGAG 300
Query 358 TTCGGGTCATCAAAGAAACTGCAGGGATTATGGGATTACTACATTAACACCATCTGCAAA 417
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 CTCGGGTCATCAAAGAAAGTGCAAGGATTATGGGATTACTACATTAACACCATCTGCAAA 360
Query 418 GAATGGCTTAAGGTTCAGAGCTTCTCCATTCGGGGATAGTTCTGCGTCTAGTATTGCACT 477
||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||
Sbjct 361 GAATGGCTTAAGGTTCAGAGCTTCTCCGTTCGGGGATAGTTCTGCTTCTAATATTGCACT 420
Query 478 GATTTCCGAACGGGGCCAAAACAAGAGTAGTCTCAAGCCAAGAGAAGTTCTTTTTCCATA 537
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GATTTCCGAACGGGCCCAAAACAAGAGTAGTCTCAAGCCAAGAGAAGTTCTTTTTCCATA 480
Query 538 TGAAGAATTTGTTGAATATTTTAACTGGGACAATCCAGAATTGGCTCCCTGTGGGCTCAT 597
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGAAGAATTTGTTCACTATTTTAACTGGGACAATCCAGAATTGGCTCCCTGTGGGCTCAT 540
Query 598 GAATTGTGGAAATAGTTGTTTCGCCAATGTGATTCTACAATGCCTTTCCTGGACACGTCC 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAATTGTGGAAATAGTTGTTTCGCCAATGTGATTCTACAATGCCTTTCCTGGACACGTCC 600
Query 658 TCTTGTTGCATATCTGCTGGAGAAAGGCCACAAGAGAGAATGTATGCGCAACGATTGGTG 717
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 TCTTGTTGCATATCTGCTGGAGAAAGGCCACAAGAGAGAATGTATGCACAACGATTGGTG 660
Query 718 CTTCCTCTGTGAATTTCAAACCCATGTTGAGAGAGCGAGTCAAAGTCGGTTCCCTTTTTC 777
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTTCTTCTGTGAATTTCAAACCCATGTTGAGAGAGCGAGTCAAAGTCGGTTCCCTTTTTC 720
Query 778 ACCAATGAACATTATTTCACGGTTAACTAATATTGGTGGAACTCTTGGATATGGAAGACA 837
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 721 ACCAATGAACATTATTTCACGGTTAACTAATATTGGTGGAACTCTTGGGTATGGAAGACA 780
Query 838 GGAGGATGCTCATGAGTTCATGAGGTATGCGATTGATATGATGCAGTCTGTTTGCCTTGA 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GGAGGATGCTCATGAGTTCATGAGGTATGCGATTGATATGATGCAGTCTGTTTGCCTTGA 840
Query 898 TGAATTCGGTGGAGAAAAAATAGTGCCTCCTCGTTCACAAGAAACAACACTTATTCAGTA 957
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 841 AGAATTCGGTGGAGAAAAAATAGTGCCTCCTCGTTCTCAAGAAACAACACTTATTCAGTA 900
Query 958 TATATTTGGAGGTCTCCTTCAATCACAGGTTCAATGTACTGTTTGCAATCATGTTTCTGA 1017
||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 901 TATATTTGGAGGTCTTCTCCAATCACAGGTTCAGTGTACTGTTTGCAATCATGTTTCTGA 960
Query 1018 CCAATATGAAAATATGATGGATCTAATCGTTGAGATGCATGGGGATGCGGGGTCTTTGGA 1077
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 961 CCAATATGAAAATATGATGGATCTAATCGTTGAGATGCATGGGGATGCGGTGTCTTTGGA 1020
Query 1078 GGAATGTCTTGATCAATTTACAGCCGAAGAGTGGCTTCATGGAGATAATATGTACAAATG 1137
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1021 GGAATGTCTTGATCAATTTACAGCCGAAGAGTGGCTTCATGGAGATAACATGTACAAATG 1080
Query 1138 TGATAGGTGTAGTGACTATGTAAAAGCATGTAAGCGTCTTACGATTCGACGCGCTCCAAA 1197
|||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||
Sbjct 1081 TGATAGGTGTAGTGACTATGTAAAGGCATGTAAGCGTCTTACGATTTGGCGCGCTCCAAA 1140
Query 1198 TATTCTTACTATTGCCTTAAAAAGATATCAGGGAGGAAGATACGGAAAATTGAACAAAAG 1257
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1141 TATTCTTACGATTGCCTTAAAAAGATATCAGGGAGGAAGATACGGAAAACTGAACAAAAG 1200
Query 1258 AATAAGTTTTCCCGAGACATTGGATCTTAATCCTTACATGAGTGAAGGCGGAGATGGATC 1317
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1201 AATAAGTTTTCCTGAGACATTGGATCTTAATCCTTACATGAGTGAAGGCGGAGAAGGATC 1260
Query 1318 AGATGTATATAAACTCTATGCAGTGATTGTCCATTTAGATATGCTGAATGCATCATTCTT 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 AGATGTATATAAACTCTATGCAGTGATTGTCCATTTAGATATGCTGAATGCATCATTCTT 1320
Query 1378 CGGCCATTACATATGCTACATTAAGGATTTTTGCGGAAACTGGTATAGAATAGATGATTC 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 CGGCCATTACATATGCTACATTAAGGATTTTTGCGGAAACTGGTATAGAATAGATGATTC 1380
Query 1438 CGAGATAGAAAGTGTTGAATTAGAAGATGTCCTTTCTCAAAGAGCTTATATGCTCCTCTA 1497
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1381 CGAGATAGAAAGTGTTGAATTAGAAGATGTTCTTTCTCAAAGAGCTTATATGCTCCTCTA 1440
Query 1498 CAGCAGGATTCAAGCTCGGTCGTCATCTTCATGTCTTAGATCAGAAGTTAAAGACGAGAA 1557
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1441 CAGCAGGATTCAAGCTCGGTCGTCATCATCATGTCTTAGATCAGAAGTTCAAGACGAGAA 1500
Query 1558 GAAAACAGACACATTGGACACAGAATCTTGCGTAAAAGAGTTAGTTGAGAGTTCAATGGT 1617
||||||||| | | | | | |||||||||||||||||||||||||||||||
Sbjct 1501 GAAAACAGA-A--T----C------T-T-GCGTAAAAGAGTTAGTTGAGAGTTCAATGGT 1545
Query 1618 AGGAGCTATTGAAAGCAGAAGCAGCACCCATGCGACCATTGAAGACCCTGTATGCGAGCA 1677
|||||||||||||||||||||||||||||||| ||||||||||||||||| | | |||||
Sbjct 1546 AGGAGCTATTGAAAGCAGAAGCAGCACCCATGTGACCATTGAAGACCCTGAACGTGAGCA 1605
Query 1678 atcaccatcaccatcgccatcaccatcaccatcaccatcgccatcaccatcaccatcaGT 1737
||||||||||||||| |||| ||||| ||| || |||| | || | |
Sbjct 1606 ATCACCATCACCATC---ATCATCATCA---TCA---TC---ATCAG--T-AC--T--G- 1645
Query 1738 ATTGGCCTCTGAATGTTGTAGTGAGGTTGAAAGGATTGATACATTGGATTCCGAGTCCAA 1797
| |||||||||| |||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1646 A----CCTCTGAATGCTGTAGTGAGGTTGAAAGGGTTGATACATTGGATTCCGAGTCAAA 1701
Query 1798 CTCTTCGATTGATGACTCTGCAACAGATCATCAAGAGGATGTAGCAAATGGGAACAAAGA 1857
| |||| | |||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1702 CCCTTCAACTGATGACTCTGCAACAGATCATCAAGAGGATGCAGCAAATGGGAACAGAGA 1761
Query 1858 TCCAGAGGTAAAATATCAGGCTGCCGATTCTTGGTCAGACCCTACAACTTCAACTCCATT 1917
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
Sbjct 1762 TCCAGAGGTAAAATATCAGGCTGTCGATTCTTGTTCAGACCCTACAACTTCAACTCCACT 1821
Query 1918 GGTCTGTACAAAATCCAAACCTCCGGTGAGAGATATGGACACCAAGATGATCGACGCTCA 1977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1822 GGTCTGTACAAAATCCAAACCTCCGGTGAGAGATATGGACACCAAGATGATCGACGCGCA 1881
Query 1978 GTGATGTGGTATGTTACAACATTTGAAAATCAGCAGAGCTTTTTAGCTTACAAAGTTACA 2037
||||||||||||||| ||||||||||||||| |||||| ||| ||||||||||||||||
Sbjct 1882 ATGATGTGGTATGTTAAAACATTTGAAAATCAACAGAGCGTTT-AGCTTACAAAGTTACA 1940
Query 2038 ATAGTGATGTAGATACTATTACACAATGACTTCTATGGTAATAAAGGGTGATTATACGTA 2097
||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||| ||
Sbjct 1941 ATAGTGATGCAGATACTATTACACAATGACTTATATGGTAC-AAAGGGTGATTATACATA 1999
Query 2098 GAATTTAAATGTTC 2111
||||||||||||||
Sbjct 2000 GAATTTAAATGTTC 2013
> Ahg481323 jgi|Araly1|481323|fgenesh2_kg.4__383__AT2G24640.1
Length=2168
Score = 1125 bits (609), Expect = 0.0
Identities = 1114/1351 (82%), Gaps = 62/1351 (5%)
Strand=Plus/Plus
Query 269 TCTGTCTGTGGGAATTTTTCCACCAAGAAATGCTCCCGCTGCAAATCCGTTCGATACTGC 328
|||||||||||||| |||| |||||||| ||||| || |||||||| || ||||||||
Sbjct 254 TCTGTCTGTGGGAAGGTTTCTACCAAGAAGTGCTCTCGTTGCAAATCTGTGAGATACTGC 313
Query 329 TCAGCAGAGTGCCAAAGGTCAGATTGG-AGTTCGGGTCATCAAA-GAAACTGC-AGG-GA 384
|| || || ||||||| |||||||||| || || || ||| ||| ||| ||| ||| |
Sbjct 314 TCTGCGGATTGCCAAACGTCAGATTGGAAG-TCAGGACAT-AAACTAAAATGCAAGGTG- 370
Query 385 TTATGGGATTACT-ACATTAACACC-ATCTGCAAAGAATGGCTTA-AGGTT-CAGAGCTT 440
|| | ||| |||| || | | |||| | | |||| || | || | || || |||||
Sbjct 371 TT-TCGGAGTACTGAC-TCATCACCGGTGGGAAAAG-AT-G-ATATCGATTACAAAGCTT 425
Query 441 CTCCATTCGGGGATAGT-TCTGCGTCT------AGT-A--TTGCACTGATTTCC-GAACG 489
||| || ||| ||| | ||||| ||| ||| | ||||| || |||| |||
Sbjct 426 CTCTGTTTGGGAATA-TGTCTGCTTCTAAGAAGAGTAAGGTTGCATTG-GTTCCTCAACT 483
Query 490 GGGCCAAAACAAGAG-TAGTC-TCAAGCCAAGAGAAGTTCTTTTTCCATATG-AAGAATT 546
| |||||| |||| | || | ||||||||| ||| |||||||| ||||| | ||| ||
Sbjct 484 GAGCCAAAGCAAG-GCTA-CCATCAAGCCAACAGATGTTCTTTTCCCATACGAAAG-TTT 540
Query 547 TGTTGA-ATATTTTAACTGGGACA-ATCC-AGAATTGGCTCCCTGTGGGCTCATGAATTG 603
|||| | ||||| ||||||||||| | || | || ||||||| |||||||||| |||||
Sbjct 541 TGTT-AGATATTATAACTGGGACAGA-CCAATAA-TGGCTCCTTGTGGGCTCACCAATTG 597
Query 604 TGGAAATAGTTGTTTCGCCAATGTGATTCTACAATGCCTTTCCTGGACACGTCCTCTTGT 663
|||||| ||||||||||| |||||| ||||||||||||||||||||||||| ||||||||
Sbjct 598 TGGAAACAGTTGTTTCGCTAATGTGGTTCTACAATGCCTTTCCTGGACACGCCCTCTTGT 657
Query 664 TGCATATCTGCTGGAGAAAGGCCACAAGAGAGAATGTATGCGCAACGATTGGTGCTTCCT 723
||| ||||| ||||||| ||||||||| ||| |||||| ||| || |||||||||||| |
Sbjct 658 TGCGTATCTTCTGGAGAGAGGCCACAAAAGACAATGTAGGCGAAATGATTGGTGCTTCTT 717
Query 724 CTGTGAATTTCAAACCCATGTTGAGAGAGCGAGTCAAAGTCGGTTCCCTTTTTCACCAAT 783
|||||||||| ||| ||| |||| ||||| | ||||| ||||| || |||||||||||
Sbjct 718 CTGTGAATTTGAAAATCATCTTGACAGAGCAAACCAAAGCCGGTTTCCATTTTCACCAAT 777
Query 784 GAACATTATTTCACGGTTAACTAATATTGGTGGAACTCTTGGATATGGAAGACAGGAGGA 843
|||||||||||||||| | | ||||||||||||| |||||| |||||||||||||||||
Sbjct 778 GAACATTATTTCACGGCTGCCGAATATTGGTGGAAATCTTGGGTATGGAAGACAGGAGGA 837
Query 844 TGCTCATGAGTTCATGAGGTATGCGATTGATATGATGCAGTCTGTTTGCCTTGATGAATT 903
|||||||||||| ||||||| ||| |||||||||||||| ||||||||||| || |||||
Sbjct 838 TGCTCATGAGTTGATGAGGTTTGCAATTGATATGATGCAATCTGTTTGCCTCGACGAATT 897
Query 904 CGGTGGAGAAAAAATAGTGCCTCCTCGTTCACAAGAAACAACACTTATTCAGTATATATT 963
|||||||| ||| | ||||||||||| | ||||| |||||||||||||| ||||||||
Sbjct 898 TGGTGGAGAGAAAGTGGTGCCTCCTCGCGCCCAAGAGACAACACTTATTCAATATATATT 957
Query 964 TGGAGGTCTCCTTCAATCACAGGTTCAATGTACTGTTTGCAATCATGTTTCTGACCAATA 1023
||| ||||||||||| |||||||| || ||||||| ||||| | ||||||||||||||||
Sbjct 958 TGGTGGTCTCCTTCAGTCACAGGTCCAGTGTACTGCTTGCAGTAATGTTTCTGACCAATA 1017
Query 1024 TGAAAATATGATGGATCTAA-TCGTTGAGATGCATGGGGATGCGGGGTCTTTGGAGGAAT 1082
|||||||||||||||| ||| | |||||||| ||||||||||||| || ||||||||||
Sbjct 1018 TGAAAATATGATGGATTTAACT-GTTGAGATACATGGGGATGCGGTATCATTGGAGGAAT 1076
Query 1083 GTCTTGATCAATTTACAGCCGAAGAGTGGCTTCATGGAGATAA-TATGTACAAATGTGAT 1141
|||| ||||| || ||||| ||||||||||||| || ||||| | | ||||||||||||
Sbjct 1077 GTCTCGATCAGTTCACAGCTAAAGAGTGGCTTCAGGGGGATAACT-TATACAAATGTGAT 1135
Query 1142 AGGTGT-AGTGACTATGTAAAAGCATGTAAGCGTCTTACGATTCGACGCGCTCCAAATAT 1200
|| ||| | ||||||||| || ||||| ||||| ||| | ||||| | |||||||||||
Sbjct 1136 AGATGTGA-TGACTATGTGAAGGCATGCAAGCGCCTTTCAATTCGTTGTGCTCCAAATAT 1194
Query 1201 TCTTACTATTGCCTTAAAAAGATATC-AGGGAGGAAGATACGGAAAATTGAACAAAAGAA 1259
|||||| |||||||||||||||| || |||| || |||| ||| ||| ||||||||||||
Sbjct 1195 TCTTACAATTGCCTTAAAAAGAT-TCCAGGGTGGGAGATTCGGTAAACTGAACAAAAGAA 1253
Query 1260 TAAGTTTTCCCGAGACATTGGATCTTAATCC-TTACATGAGT-GAAGGCGGAGATGGATC 1317
| ||||||||||||||||| ||||| | || ||||||||| | || | ||| |||||
Sbjct 1254 TTAGTTTTCCCGAGACATTTGATCT-AGGCCCTTACATGAGCAGT-GGAGTAGAAGGATC 1311
Query 1318 AGATGTATATAAACTCTATGCAGTGATTGTCCATTTAGATATGCTGAATGCATCATTCTT 1377
||||||||| ||||||||||| ||||||||||||||||||||| ||||||| ||||| ||
Sbjct 1312 AGATGTATACAAACTCTATGCTGTGATTGTCCATTTAGATATGTTGAATGCCTCATTTTT 1371
Query 1378 CGGCCATTACATATGCTACATTAAGGATTTTTGCGGAAACTGGTATAGAATAGATGATTC 1437
|||||||||||||||||| | ||||| || | |||||||||||||||||||| |||||
Sbjct 1372 CGGCCATTACATATGCTATGTCAAGGACTTCCGTGGAAACTGGTATAGAATAGACGATTC 1431
Query 1438 CGAGATAGAAAGTGTTGAATTAGAAGATGTCCTTTCTCAAAGAGCTTATATGCTCCTCTA 1497
||| | |||| |||||| |||||||||||||||||||| |||| || |||||||||||
Sbjct 1432 TGAGGTGGAAAAAGTTGAACTAGAAGATGTCCTTTCTCAACGAGCATACATGCTCCTCTA 1491
Query 1498 CAGCAGGATTCAAGCTCGGTCGTCATCTTCATGTCTTAGATC--A-GAAGTTAAAGACGA 1554
||||||| |||| || | | | |||| || |||||||| | |||| | |||| ||
Sbjct 1492 CAGCAGGGTTCA-GCCCAGAC--CATCAA-AT--CTTAGATCCGAAGAAGGTCAAGATGA 1545
Query 1555 GAAGAAAACAGACACATTGGACACAGAATCT 1585
||||||||||| |||||| |||||||||||
Sbjct 1546 AAAGAAAACAGATACATTGAACACAGAATCT 1576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79799063275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5