BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31720.2
Length=857
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491569 jgi|Araly1|491569|fgenesh2_kg.7__1002__AT4G31720.2 1260 0.0
> Ahg491569 jgi|Araly1|491569|fgenesh2_kg.7__1002__AT4G31720.2
Length=856
Score = 1260 bits (682), Expect = 0.0
Identities = 809/865 (94%), Gaps = 30/865 (3%)
Strand=Plus/Plus
Query 6 TGAGTTGGACCAGTCGGAGGATTAGGGTTTCAACGGAGACTCACTA---GTCGA-TCTCC 61
||||||||||||||||||| |||||||||||||||| ||||||||| ||||| |||||
Sbjct 1 TGAGTTGGACCAGTCGGAGAATTAGGGTTTCAACGGGGACTCACTAGTCGTCGACTCTCC 60
Query 62 GATCCTTTCTTCTACCCGCCCGAAATCCGTCGAAACTTCTCTTCTTTACCATTGATTTGC 121
||||||||||||| ||||||| |||||||||||||||||||||||||| | ||||||| |
Sbjct 61 GATCCTTTCTTCTCCCCGCCCAAAATCCGTCGAAACTTCTCTTCTTTAGCTTTGATTTAC 120
Query 122 CTCGTCTCAGCTCAA---T-TCTC---TTC-CGTTGCTGCTTCGTTTAGTACTCTGGTGG 173
||||| ||||||||| | |||| ||| |||| ||||||||||||||||||||||||
Sbjct 121 CTCGTATCAGCTCAATTCTCTCTCTTTTTCACGTTACTGCTTCGTTTAGTACTCTGGTGG 180
Query 174 TGGGAGAGATGAATCACGGCCAACAATCTGGTGAGGCAAAGCATGAAGATGATGCTGCTC 233
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 TGGGAGATATGAATCACGGCCAACAATCTGGCGAGGCAAAGCATGAAGATGATGCTGCTC 240
Query 234 TTACAGAGTTCCTTGCTTCTCTGATGGATTATACTCCTACTATTCCTGATGATTTAGTGG 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTACAGAGTTCCTTGCTTCTCTGATGGATTATACTCCTACTATTCCTGATGATTTAGTGG 300
Query 294 AGCACTACTTGGCTAAGAGTGGATTTCAGTGCCCCGACGTACGATTGATAAGGCTAGTTG 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 AGCACTACTTGGCTAAGAGTGGATTTCAGTGCCCCGACGTACGATTGATAAGGCTGGTTG 360
Query 354 CTGTGGCTACACAAAAGTTTGTTGCAGATGTTGCCAGTGACGCCCTTCAGCATTGCAAGG 413
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 361 CTGTGGCTACACAAAAGTTTGTTGCAGATGTTGCCAGTGACGCCCTTCAGCACTGCAAGG 420
Query 414 CTAGACCAGCACCAGTTGTGAAAGACAAAAAACAGCAAAAGGATAAGCGTTTGGTATTGA 473
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 CTAGACCAGCACCAGTTGTGAAAGACAAAAAACAGCAAAAGGATAAGCGTTTGATATTGA 480
Query 474 CAATGGAAGATCTTTCAAAAGCTTTGCGTGAGTATGGTGTGAACGTGAAGCATCCAGAAT 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CAATGGAAGATCTTTCAAAAGCTTTGCGTGAGTATGGTGTGAACGTGAAGCATCCAGAAT 540
Query 534 ATTTTGCTGATAGCCCTTCGACTGGAATGGACCCTGCAACAAGGGACGAATAGAAACCAG 593
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 541 ATTTTGCTGATAGCCCTTCGACTGGAATGGATCCTGCGACAAGGGACGAATAGAAACCAG 600
Query 594 GAATTCCTCAA-A--ATCTTTGCCTAGTAAGGACGGTCATGTGTCTCAGATCCCTGATTC 650
|||||| ||| | ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 GAATTCTTCATCATCATCTTTGCCTAGTAAGGACGGTCATGTGTGTCAGATCCCTGATTC 660
Query 651 TCTGTTGTGTTTCAGTTAAAAACAAAACTCACTTGTCTTGCTAGTCCTCAATTACT-AC- 708
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 661 TCTGTTGTGTTTCATTTAAAAACAAAACTCACTTGTCTTGCTAGTCATCAATTACTTACT 720
Query 709 A--TTACATGTATATTCGTTTGTTGTTTGTTCTCTGGTGATTTTTGGGGTTCTACATCAC 766
| |||||||||||||| ||| |||||||||||| || | | || |||||||||||
Sbjct 721 ACATTACATGTATATTCCTTTATTGTTTGTTCTC-GG-G-T----GG--TTCTACATCAC 771
Query 767 TTATCCACCATTCTTGCAAGTCTCCAAGTCGTGAAAATAAGATA-A-GTATCCATCCTTG 824
||||||||||||||||||| |||||||||||||| ||||||||| | |||||||||||||
Sbjct 772 TTATCCACCATTCTTGCAAATCTCCAAGTCGTGATAATAAGATATAAGTATCCATCCTTG 831
Query 825 TGATTAACTGGATACTGTAGGATTG 849
|||||||||| ||||||||||||||
Sbjct 832 TGATTAACTGAATACTGTAGGATTG 856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31718266944
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5