BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31750.1
Length=1438
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491566 jgi|Araly1|491566|fgenesh2_kg.7__999__AT4G31750.1 2117 0.0
Ahg489354 jgi|Araly1|489354|fgenesh2_kg.6__2488__AT5G24940.1 564 7e-160
> Ahg491566 jgi|Araly1|491566|fgenesh2_kg.7__999__AT4G31750.1
Length=1405
Score = 2117 bits (1146), Expect = 0.0
Identities = 1333/1418 (94%), Gaps = 34/1418 (2%)
Strand=Plus/Plus
Query 34 AATTTCTC-CAGTTTTGTCAAAAACGAAGACCACAGC----G-A-G--CCCTAAATCTTG 84
|||||||| || |||||||||||||||||||||||| | | | |||||||| |||
Sbjct 1 AATTTCTCTAAG-TTTGTCAAAAACGAAGACCACAGCGATTGCAGGATCCCTAAATATTG 59
Query 85 -TCGGGCGTTGAATCTTACAAATTTGCAAGTG---ATTCTCGTCATACCTGTAtcttctt 140
| |||||||||||||||||||||||| |||| |||||||||| | ||||||||||
Sbjct 60 TTGGGGCGTTGAATCTTACAAATTTGCTAGTGTATATTCTCGTCAAATCTGTATCTTC-- 117
Query 141 cttcttcttcgttcttcttctGGATTTGATTGGTGGACAAAGGTAGCTGAATC--AGCTT 198
||||||| | |||||||||| | ||||||||| |||| |||| ||||||||| |||||
Sbjct 118 CTTCTTC--C-TTCTTCTTCT-G-TTTGATTGGCGGACGAAGGAAGCTGAATCAGAGCTT 172
Query 199 CAGAATTGAATTTGATCTTTG--TTTGAGACAAGAAGCATTGGTGTTTGGAGCATTTCTG 256
|||| |||||||||||||||| |||| ||| || || |||||||||||||||||||||
Sbjct 173 CAGATTTGAATTTGATCTTTGATTTTGCGAC--GAGGCTTTGGTGTTTGGAGCATTTCTG 230
Query 257 AGGAGTTATGGGATATCTGAATTCTGTTTTGTCATCTTCGAGCCAGGTTCACTCCGACGA 316
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 AGGAATTATGGGATATCTGAATTCTGTTTTGTCATCTTCGAGCCAGGTTCACTCCGACGA 290
Query 317 TGGACCTGTTAGCGGTGGTGGCCTCAGTCAGAACGGGAAGTTCAGCTATGGATATGCAAG 376
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 291 TGGACCTGTTAGCGGCGGCGGCCTCAGTCAGAACGGGAAGTTCAGCTATGGATATGCAAG 350
Query 377 CTCTCCCGGTAAAAGATCTTCTATGGAGGACTTCTATGAAACTAGGATCGACGGCGTTGA 436
||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 351 CTCTCCCGGTAAAAGATCTTCAATGGAGGACTTCTATGAAACTAGGATTGATGGCGTTGA 410
Query 437 AGGGGAAATAGTTGGTCTATTTGGAGTCTTTGATGGACATGGAGGTGCACGTGCAGCTGA 496
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TGGGGAAATTGTTGGTCTATTTGGAGTCTTTGATGGACATGGAGGTGCACGTGCAGCTGA 470
Query 497 ATATGTGAAGCAAAATCTCTTCAGTAACCTGATCAGGCATCCAAAGTTCATCTCTGATAC 556
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 471 ATATGTGAAGCAAAATCTGTTCAGTAACCTGATCAGGCATCCAAAGTTCATATCTGATAC 530
Query 557 CACAGCTGCAATAGCTGATGCATACAACCAAACAGACTCAGAGTTTCTTAAATCAGAAAA 616
|||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 531 CACAGCAGCCATAGCTGATGCATACAACCAAACAGATTCAGAGTTCCTTAAATCAGAAAA 590
Query 617 TAGTCAGAACAGAGATGCTGGTTCAACGGCGTCAACAGCCATCTTAGTTGGTGACCGTTT 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TAGTCAGAACAGAGATGCTGGTTCAACGGCGTCAACAGCCATCTTAGTTGGTGACCGTTT 650
Query 677 ACTTGTTGCAAATGTAGGGGACTCTAGAGCTGTAATATGCAGAGGTGGCAATGCTATTGC 736
||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 651 ACTTGTTGCAAATGTCGGAGACTCTAGAGCTGTTATATGCAGAGGTGGCAATGCTATTGC 710
Query 737 TGTATCCCGAGATCACAAGCCTGATCAAAGTGACGAGCGCCAAAGAATTGAGGATGCAGG 796
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 711 TGTATCCCGAGATCACAAGCCTGATCAAAGTGATGAGCGCCAAAGAATTGAGGATGCAGG 770
Query 797 AGGATTTGTCATGTGGGCTGGAACATGGAGAGTTGGAGGAGTTCTTGCTGTTTCTCGTGC 856
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 AGGCTTTGTCATGTGGGCTGGAACATGGAGAGTTGGAGGAGTTCTTGCTGTTTCTCGTGC 830
Query 857 ATTTGGCGATAGGTTGTTGAAGCAGTATGTTGTTGCTGATCCGGAGATACAGGAGGAAAA 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 ATTTGGCGATAGGTTGTTGAAGCAGTATGTTGTTGCTGATCCGGAGATACAGGAGGAAAA 890
Query 917 AGTTGATAGCTCTCTCGAGTTTCTCATTCTTGCAAGTGATGGTCTCTGGGACGTTGTATC 976
||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 891 AGTCGATAGCTCTCTCGAGTTTCTCATTCTTGCAAGTGATGGTCTATGGGATGTTGTATC 950
Query 977 TAACGAGGAAGCCGTAGGCATGATCAAGGCGATAGAAGATCCCGAGGAAGGTGCAAAGAG 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 TAACGAGGAAGCCGTAGGCATGATCAAGGCGATAGAAGATCCCGAGGAAGGTGCAAAGAG 1010
Query 1037 ACTGATGATGGAAGCTTACCAAAGAGGAAGTGCAGACAACATAACTTGTGTCGTCGTACG 1096
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1011 ACTGATGATGGAAGCATACCAAAGAGGAAGTGCAGACAACATAACTTGTGTCGTTGTACG 1070
Query 1097 TTTCTTTTCAGACCAAGCAGGAGGAATAGGTTCCAGCAGCACCAATATCCCAATAGATCA 1156
||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1071 TTTCTTTTCAGACCAGGCAGGAGGAATAGGTTCCAGCAGCACCAGTATCCCAATTGATCA 1130
Query 1157 TGGTATCG-TACCTGACCGAATCTCCGGTGACTCATCAACCTAGTTCTAACATTGGTAAC 1215
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 TGGTAT-GATACCTGACCGAATCTCCGGTGACTCATCAACCTAGTTCTAACATTGGTAAC 1189
Query 1216 ATCCTTTTCGGGTTTCGTGATCTCAAAACAAGTGAATCTGGGAGATTATATATTGTTATA 1275
||| || ||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 GTCCATT-CGGATTTCGAGATCTCAAAACAAGTGAATCTGGGAGATTATATATTGTTATA 1248
Query 1276 AAAAGGT-GAAAGGTTTTCAAGAATATACAAACAAAACTCT-CACACGAACGTTTTTTGC 1333
||||||| ||| |||||||||||||||||| |||||||||| |||||||||||||||| |
Sbjct 1249 AAAAGGTCGAA-GGTTTTCAAGAATATACAGACAAAACTCTTCACACGAACGTTTTTTTC 1307
Query 1334 TGTGTCGTGTATCTTTTGTTGTTGTTATACATTTGTTAC-TTGGGTATGTAGCTATAGAG 1392
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||| | |
Sbjct 1308 TGTGTCGTGTATCTTTTGTTGTTGTTATACATTTGTTAAATTGGGCATGTAGCTAAACAT 1367
Query 1393 AGAATAAATGTATTAGTACAAGTTCTGATTCATTCTAC 1430
||||||||||||||||||||||||||||||||||||||
Sbjct 1368 AGAATAAATGTATTAGTACAAGTTCTGATTCATTCTAC 1405
> Ahg489354 jgi|Araly1|489354|fgenesh2_kg.6__2488__AT5G24940.1
Length=1341
Score = 564 bits (305), Expect = 7e-160
Identities = 634/791 (80%), Gaps = 30/791 (4%)
Strand=Plus/Plus
Query 327 AGCGGTGGTGGCCTCAGTCAGAACGGGAAGTTCAGCTATGGATATGCAAGCTCTCCCGGT 386
||||| ||||| ||||||||||| || || ||||||||||||||||||||||| | ||
Sbjct 64 AGCGGAGGTGGTCTCAGTCAGAATGGAAAATTCAGCTATGGATATGCAAGCTCAGCTGGG 123
Query 387 AAAAGATCTTCTATGGAGGACTTCTATGAAACTAGGATCGACGGCGTTGAAGGGGAAATA 446
|| ||||| |||||||| ||||| | ||| |||||||||||||| | || || |||||
Sbjct 124 AAGAGATCATCTATGGAAGACTTTTTTGAGACTAGGATCGACGGTATCGATGGAGAAATC 183
Query 447 GTTGGTCTATTTGGAGTCTTTGATGGACATGGAGGTGCACGTGCAGCTGAATATGTGAAG 506
|| ||||||||||||||||||||||||||||| || ||| | |||||||| |||||||||
Sbjct 184 GTCGGTCTATTTGGAGTCTTTGATGGACATGGTGGAGCAAGAGCAGCTGAGTATGTGAAG 243
Query 507 CAAAATCTCTTCAGTAACCTGATCAGGCATCCAAAGTTCATCTCTGATACCACAGCTGCA 566
| |||| ||||| || || || | ||||| ||||||||||||||||||| | |||||
Sbjct 244 CGTCATCTTTTCAGCAATCTTATTACTCATCCTAAGTTCATCTCTGATACCAAATCTGCA 303
Query 567 ATAGCTGATGCATACAAC-CAAACAGACTCAGAGTTTCTTAAATCAGAAAATAGTCAGAA 625
|||||||||||||| | | || |||||||| || |||| || |||||||||||||| |
Sbjct 304 ATAGCTGATGCATATA-CTCATACAGACTCTGAACTTCTCAAGTCAGAAAATAGTCACA- 361
Query 626 C-AGAGATGCTGGTTCAACGGCGTCAACAGCCAT-CTTAGTTGGTGACCGTTTACTTGTT 683
| |||||||||||||| || || || ||||| || ||| |||||||| ||||||||||||
Sbjct 362 CTAGAGATGCTGGTTCTACTGCTTCCACAGCTATTCTT-GTTGGTGATCGTTTACTTGTT 420
Query 684 GCAAATGTAGGGGACTCTAGAGCTGTAATATG-CAGAGGTGGCAATGC-TATTGCTGTAT 741
|| ||||| || || || |||||||| ||||| | |||| || ||||| | ||||||| |
Sbjct 421 GCTAATGTTGGTGATTCCAGAGCTGTTATATGTC-GAGGCGGAAATGCCT-TTGCTGTGT 478
Query 742 CCCGAGATCACAAGCCTGATCAAAGTGACGAGCGCCAAAGAATTGAGGATGCAGGAGGAT 801
| |||| || || ||||| |||||||| || || || | |||||| |||| || || |
Sbjct 479 CAAGAGACCATAAACCTGACCAAAGTGATGAACGTGAACGGATTGAGAATGCTGGTGGTT 538
Query 802 TTGTCATGTGGGCTGGAACATGGAGAGTTGGAGGAGTTCTTGCTGTTTCTCGTGCATTTG 861
|||| |||||||| || || ||||||||||||||||||||||| |||||||| || ||||
Sbjct 539 TTGTGATGTGGGCAGGGACTTGGAGAGTTGGAGGAGTTCTTGCAGTTTCTCGCGCCTTTG 598
Query 862 GCGATAGGTTGTTGAAGCAGTATGTTGTTGCTGATCCGGAGATACAGGAGGAAAA-AGTT 920
| ||| | ||| |||| |||||||||||||||||||| || || ||||| || || | ||
Sbjct 599 GTGATCGATTGCTGAAACAGTATGTTGTTGCTGATCCAGAAATTCAGGAAGAGAAGA-TT 657
Query 921 GATAGCT-CTCTCGAGTTTCTCATTCTTGCAAGTGATGGTCTCTGGGACGTTGTATCTAA 979
||| | | |||| || ||||| |||||||| || ||||| || ||||| ||| | || ||
Sbjct 658 GAT-GATTCTCTTGAATTTCTGATTCTTGCTAGCGATGGACTATGGGATGTTTTCTCCAA 716
Query 980 CGAGGAAGCCGTAGGCA-TGATCAAGGC-GATAGAAGATCCCGAGGAAGGTGCA--AAGA 1035
|||||||| || | || || | || | | | |||||||| || || | | || ||||
Sbjct 717 TGAGGAAGCGGTTG-CAGTGGTGAAAGAAGTT-GAAGATCCGGAAGA-G-TCCACCAAGA 772
Query 1036 GACT-GATGATG-GAAGC--TTACCAAAGAGGAAGTGCAGACAACATAACTTGTGTCGTC 1091
||| | || | ||||| || | | |||||||||||||||| || || ||||| |||
Sbjct 773 AACTTG-TGG-GCGAAGCAATT-CGGA-GAGGAAGTGCAGACAATATTACATGTGTAGTC 828
Query 1092 GTACGTTTCTT 1102
|||||||||||
Sbjct 829 GTACGTTTCTT 839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53783425940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5