BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31760.1
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328551 jgi|Araly1|328551|fgenesh1_pm.C_scaffold_7000778 1459 0.0
Ahg481340 jgi|Araly1|481340|fgenesh2_kg.4__400__AT2G24800.1 499 1e-140
> Ahg328551 jgi|Araly1|328551|fgenesh1_pm.C_scaffold_7000778
Length=981
Score = 1459 bits (790), Expect = 0.0
Identities = 896/948 (95%), Gaps = 4/948 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTCCTCTTACAGAA-TAAACTGTTCCACTCTTCTTCATCTCCTTATGTTTCTGTC 59
|||||||||||||||| || |||||| |||| || |||||||||||||| ||||||| ||
Sbjct 1 ATGGCGTCCTCTTACA-AACTAAACTATTCCTCTATTCTTCATCTCCTTCTGTTTCTTTC 59
Query 60 TAGTCTTCTCACTTCCTCCGCCAACCTCTCCTTTAATTTCTATGCTAGTTCTTGTTCTGT 119
|||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 60 TAGTCTTCTCACTTCCTCCGCCAACCTCTCATTTAATTTCTACGCCGGTTCTTGTTCTGT 119
Query 120 AGCCGAGTTTCTAGTCAGAAACACCGTTAGATCAGCTACCTCCTCCGATCCAACGATCCC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGCCGAGTTTCTAGTCAGAAACACCGTTAGATCAGCTACCTCCTCCGATCCAACGATCCC 179
Query 180 CGGGAAACTCCTTCGTCTTTTCTTCCACGACTGTTTCGTCCAGGGTTGTGATGCATCAGT 239
||||||||| | ||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 180 GGGGAAACTCGTCCGTCTCCTCTTCCACGACTGTTTCGTCCAGGGTTGTGATGCGTCAGT 239
Query 240 GTTGATACAAGGGAATAGCACAGAGAAAAGCGATCCCGGAAACGCATCTCTTGGAGGATT 299
|||||||||||||||| ||||||||| ||| ||||||||||| || ||||||||||||||
Sbjct 240 GTTGATACAAGGGAATGGCACAGAGAGAAGTGATCCCGGAAATGCCTCTCTTGGAGGATT 299
Query 300 CTCAGTCATAGACACAGCCAAGAATGCCATCGAGAATTTATGTCCGGCCACTGTTTCTTG 359
|||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| ||
Sbjct 300 CTCAGTCATAGACACAGCCAAGAACGCCATCGAGATTTTATGTCCGGACACTGTTTCCTG 359
Query 360 CGCTGACATAGTTGCACTTGCTGCTAGAGACGCCGTCGAAGCTGCAGGAGGACCGGTGGT 419
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGCTGACATAGTCGCACTTGCTGCTAGAGACGCCGTCGAAGCTGCAGGAGGACCGGTGGT 419
Query 420 TGAGATTCCGACAGGGAGGAGAGACGGGAAAGAATCGATGGCTGCAAACGTGAGACCGAA 479
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 420 TAAGATTCCGACAGGGAGGAGAGACGGGAAAGAATCGATGGCTGCAAACGTAAGACCGAA 479
Query 480 CATCATCGACACAGATTTTACTCTCGATCAAATGATCGATGCCTTCTCTTCCAAAGGCTT 539
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 CATCATCGACACAGATTTCACTCTCGATCAAATGATCGATGCCTTCTCTTCTAAAGGCTT 539
Query 540 GTCCATTCAAGATCTCGTCGTCCTCTCAGGAGCACACACAATTGGAGCATCACACTGTAA 599
|||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 540 GTCCATTCAAGATCTCGTTGTCCTCTCTGGAGCACACACGATTGGAGCATCACACTGTAA 599
Query 600 CGCATTCAATGGAAGGTTTCAACGAGACTCGAAAGGAAACTTCGAGGTAATTGATGCGTC 659
|||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||
Sbjct 600 CGCATTCAATGGAAGGTTTCAACGAGACTCGAAAGGAAACTTCGAGCTAATCGACGCGTC 659
Query 660 TCTCGACAACTCCTACGCAGAGACACTAATGAACAAGTGTTCGTCCTCGGAATCCTCATC 719
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 660 TCTCGACAACTCCTACGCAGAGACACTAATGAACAAATGTTCGTCCTCGGAATCCTCGTC 719
Query 720 ATTGACTGTGAGCAACGATCCAGAGACATCTGCCGTATTCGATAATCAGTACTATAGGAA 779
|||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 720 ATTGACAGTGAGCAACGATCCAGAGACATCTTCCATATTCGATAATCAGTACTATAGGAA 779
Query 780 TCTTGAGACGCACAAGGGTTTGTTTCAGACGGATTCTGCTTTGATGGAGGATAATCGGAC 839
||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 780 TCTGGAGACTCACAAGGGTTTGTTCCAGACGGATTCTGCTTTGATGGAGGATAATCGGAC 839
Query 840 GAGGACAATGGTGGAGGAATTAGCGAGTGATGAGGAAAGCTTTTT-TCAAAGATGGAGTG 898
|||||| ||||||| |||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct 840 GAGGACGATGGTGGGGGAATTAGCGAGTGATGAGGAAAG-TTTTTATCAGAGATGGAGTG 898
Query 899 AGTCGTTTGTGAAACTGAGTATGGTTGGTGTGAGAGTTGGTGAAGATG 946
|||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 899 AGTCGTTTGTGAGACTGAGTATGGTTGGTGTGAAAGTTGGTGAAGATG 946
> Ahg481340 jgi|Araly1|481340|fgenesh2_kg.4__400__AT2G24800.1
Length=990
Score = 499 bits (270), Expect = 1e-140
Identities = 692/889 (78%), Gaps = 55/889 (6%)
Strand=Plus/Plus
Query 85 CTCTCCTTT-AATTTCTATGCTAGTTCTTGTTCTGTAGCCGAGTTTCTAGTCAGAAACAC 143
|||| |||| || ||||| || |||||||| | | ||| ||||| | ||||| |||||
Sbjct 91 CTCT-CTTTCAACTTCTACGCCGGTTCTTGTCCCGGAGCTGAGTTAATCGTCAGGAACAC 149
Query 144 CGTTAGATCAGCTACCTCCTCCGATCCAACGA-TCCCCGGGAAACTCCTTCGTCTTTTCT 202
||||||||| ||| | ||||| |||||| | | ||| ||||| ||||| ||||| |||
Sbjct 150 CGTTAGATCTGCTTCTTCCTCTGATCCATC-AGTCCTTGGGAAGCTCCTACGTCTCATCT 208
Query 203 TCCACGACTGTTTCGTCCAGGGTTGTGAT-GCATCAGTGTTGATACAAGGGAATAGCACA 261
|||| || || |||||| ||||||||||| || || |||||||| | |||||| | |||
Sbjct 209 TCCATGATTGCTTCGTCAAGGGTTGTGATGGC-TCGGTGTTGATTCGAGGGAACGGTACA 267
Query 262 GAGAAAAGCGATCCC-GGAAACGCATCTCTTGGAGGATTCTCAGTCATAGACACAGC--C 318
||| |||||| ||| || || |||||||| ||||||||| | || ||||| | ||| |
Sbjct 268 GAGCGAAGCGA-CCCTGGGAATGCATCTCTAGGAGGATTCACTGTTATAGA-A-AGCATC 324
Query 319 AAGAATG-CCATCGAGAAT-TTATGT-CCGGCCACTGTTTCTTGCGCTGACATAGTTGCA 375
|| |||| || |||| ||| || ||| |||| ||| || ||||||||||| || | |
Sbjct 325 AAAAATGTCC-TCGA-AATCTTTTGTCCCGG-CACAGTGTCTTGCGCTGATATCCTCGTT 381
Query 376 CTTGCTGCTAGAGACGCCGTCGAAGCTGC-AGGAGGACCGGTGGTT-GAGATTCCGACAG 433
|||||||||||||| || || |||||| | |||||||||||| ||| | || |||||||
Sbjct 382 CTTGCTGCTAGAGATGCAGTAGAAGCT-CTAGGAGGACCGGTAGTTCCA-ATACCGACAG 439
Query 434 GGAGGAGAGACGGGAAAGAATCGATGGCTGCAAACGTGAGACCGAACATCATCGACACAG 493
| || |||||||||| || || ||||| | ||| || ||||| ||||||||||| || |
Sbjct 440 GAAGAAGAGACGGGACAGTCTCAATGGCAGAAAATGTCAGACCAAACATCATCGATACTG 499
Query 494 ATTTTACTCTCGATCAA-ATGATCGATGCCTTCTCTTCCAAAGGCTTGTCCATTCAAGAT 552
| || || | ||| || |||||| || ||| || || |||||||| || |||||||
Sbjct 500 ACTTCACAGTTGAT-AAGATGATCAATATCTTTTCCTCTAAAGGCTTATCTGTTCAAGAC 558
Query 553 CTCGTCGTCCTCTCAGGAGCACACACAATTGGAGCAT-CACACTGTAACGCATTCAATGG 611
|| || |||||||| ||||||||||| |||||||| | | || || ||| ||||||| |
Sbjct 559 CTAGTGGTCCTCTCTGGAGCACACACTATTGGAGC-TGCGCATTGCAACACATTCAACAG 617
Query 612 AAGGTTTCAA-CGAGACT-CGAAAGGAAACTTCGAGGTAATTGATGCGTCTCTCGACAAC 669
|||||| || | || | | ||||| ||||| ||| |||| || ||||||||||| |||
Sbjct 618 CAGGTTT-AAGCTTGA-TCCAAAAGGCAACTTAGAGCTAATAGACGCGTCTCTCGATAAC 675
Query 670 TCCTA--CGCAGAGACACTAATGAACAAGTGTTCGTCCTC-GGA-ATCC-TC-ATCATTG 723
||||| |||| | ||||| | ||||||||||| || || | |||| | | || |
Sbjct 676 TCCTATGCGCA-A-ACACTTGTAAACAAGTGTTCATCGTCATTAGATCCAACGACCACGG 733
Query 724 ACTG-TGAGCAACGATCCAGAGACATC-T-GCCGTATTCGATAATCAGTACTATAGGAAT 780
| | ||| |||||||||||||||||| | | || ||||||||||||||||| | ||||
Sbjct 734 TC-GTTGA-CAACGATCCAGAGACATCTTCGACG--TTCGATAATCAGTACTACAAGAAT 789
Query 781 CTTG-AGACGCACAAGGGTTTGTTTCAGACGGATTCTGCTTTGATGGAGGATAATCGGAC 839
| || | |||||||||||||||||||||||||||| ||| | ||||| ||| |||| ||
Sbjct 790 C-TGTTGGCGCACAAGGGTTTGTTTCAGACGGATTCAGCTCTCATGGAAGATGATCGAAC 848
Query 840 GAGGACA-ATGGTGGAGGAAT-TAGCGAGTGATGAGGAAAGCTTTTTTCAA-AGATGGAG 896
||||| | || |||||| | | | |||| |||| |||| || ||| ||| | |||||||
Sbjct 849 GAGGA-AGATTGTGGAG-ATTCTTGCGAATGATCAGGAGAG-TTTCTTCGATAGATGGAC 905
Query 897 TGAGTCGTTTGTGAA-ACTGAGTATGGTTGGTGTGAGAGTTGGTGAAGA 944
|||||| ||| |||| | ||||| || | ||||||||||||||||||||
Sbjct 906 TGAGTCTTTTTTGAAGA-TGAGTTTGATGGGTGTGAGAGTTGGTGAAGA 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39647833680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5