BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31770.1
Length=1661
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944802 jgi|Araly1|944802|scaffold_701031.1 2119 0.0
> Ahg944802 jgi|Araly1|944802|scaffold_701031.1
Length=1297
Score = 2119 bits (1147), Expect = 0.0
Identities = 1249/1299 (96%), Gaps = 3/1299 (0%)
Strand=Plus/Plus
Query 153 AATAGTAGAATTCAGCAGAGAGATGAAGATTGCAATTGAAGGTTGTATGCATGGAGACCT 212
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2 AATAGTAGAATT---CAGAGAGATGAAGATTGCTATTGAAGGTTGTATGCATGGAGACCT 58
Query 213 AGACAATGTGTATAAAACAATTCAACATTACGAACAGATTCACAACACTAAAGTCGATCT 272
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 59 AGACAATGTGTATAAAACAATTCAACATCACGAACAGATTCACAACACTAAAGTCGATCT 118
Query 273 CCTCCTCTGCTGCGGCGATTTTCAGGCTGTTAGAAATGAGAAAGACATGGATAGCCTTAA 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 119 CCTCCTCTGCTGCGGCGATTTTCAGGCTGTTAGAAATGAGAAAGACATGGATAGCCTCAA 178
Query 333 CGTACCTAGAAAATACAGAGAGATGAAATCTTTCTGGAAGTACTACTCCGGCCAAGAAGT 392
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 179 CGTACCTAGAAAATACAGAGAGATGAAATCTTTCTGGAAATACTACTCCGGCCAAGAAGT 238
Query 393 TGCTCCGATTCCCACAATTTTCATTGGTGGGAATCATGAGGCTTCTAACTACTTATGGGA 452
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 239 TGCTCCGATTCCCACAATTTTCATTGGTGGGAATCACGAGGCTTCTAACTACTTGTGGGA 298
Query 453 ATTGTATTATGGGGGTTGGGCTGCCACCAATATTTACTTTTTGGGTTTTGCTGGAGTTGT 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ATTGTATTATGGGGGTTGGGCTGCCACCAATATTTACTTTTTGGGTTTTGCTGGAGTTGT 358
Query 513 CAAGTTTGGTAATGTGCGAATTGGTGGCCTTTCTGGTATATACAATGAGCGTCATTACCG 572
|||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||
Sbjct 359 CAAGTTTGGTAATGTGCGAATTGGAGGCCTTTCGGGTATCTACAATGAGCGGCATTACCG 418
Query 573 TTCAGGACACTTTGAGCGGCCACCATATAACGAGAGCACCATCAGATCGGTCTATCATGT 632
||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 419 TTCAGGACACTTTGAGCGGCCTCCATATAATGAGAGCACCATTAGATCGGTCTATCATGT 478
Query 633 TCGTGACTATGATGTCCAGAAGTTGATGCAACTTGAAGAGCCGCTTGATATATTTCTATC 692
||||| |||||||||||||||||| | ||||| ||||||||||||||||||||||| ||
Sbjct 479 CCGTGAGTATGATGTCCAGAAGTTGTTACAACTGGAAGAGCCGCTTGATATATTTCTCTC 538
Query 693 ACATGATTGGCCTGTTGGAATCACTGATTATGGAGACTCAGAATCACTTATGCGGCAAAA 752
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 539 ACATGATTGGCCTGTTGGTATCACTGATTATGGAGACTCAGAAGCACTTATGCGGCAAAA 598
Query 753 ACCATACTTTCGTCAAGAGATCGAGGAAAAAACTCTTGGAAGTAAACCAGCGGCTCTACT 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ACCATACTTTCGTCAAGAGATCGAGGAAAAAACTCTTGGAAGTAAACCAGCGGCTCTACT 658
Query 813 GCTAGAAAAACTGAAGCCTCAATATTGGTTTTCAGCTCATTTACATTGCAAATTTGCTGC 872
|||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 659 GCTAGAAAAACTGAAGCCTCGGTATTGGTTTTCTGCTCACTTACATTGCAAATTTGCTGC 718
Query 873 TGCTGTTCAACACGGGAATGATGGGTCAGTGACAAAATTTCTTGCCCTCGATAAATGCCT 932
|||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 719 TGCTGTTCAACATGGGAATGATGGATCAGTGACAAAGTTTCTTGCCCTTGATAAATGCCT 778
Query 933 TCCAGGGAAAAAGTTTTTACAGATTATTGAAATCGAATCAGAGCCTGGACCCTTTGAGGT 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TCCAGGGAAAAAGTTTTTACAGATTATTGAAATCGAATCAGAGCCTGGACCCTTTGAGGT 838
Query 993 CCTATACGATGAAGAGTGGCTAGCAATCACACGAAAGTTCAATTCTATTTTCCCGCTAAC 1052
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 839 CCAATACGATGAAGAGTGGCTAGCAATAACACGAAAGTTCAATTCTATTTTCCCGCTAAC 898
Query 1053 AAGGAGATACACAAACGTCAGCACTGCTGGAACTATACAAGAGAGCCGTGAGTGGGTGAG 1112
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AAGGAGATACACAAACTTCAGCACTGCTGGAACTATACAAGAGAGCCGTGAGTGGGTGAG 958
Query 1113 GAAGAAGCTAGAAGAAAGGCAATTTAAACCTTTTGAGTTTGCGAGAACAGTACCTGCATA 1172
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 959 GAAGAAGCTAGAAGAAAGGCAATTTAAACCTTTTGAGTTTGCGAGGACAGTACCTGCATA 1018
Query 1173 TAACCCATCACAACGTGTATTTGATTCCATTCCTGAGATCCCGCAGAATCCCCAGACGCT 1232
|||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1019 TAACCCATCACAACGTATATTTGATTCCATTCCTGAGATCCCACAAAATCCCCAGACGCT 1078
Query 1233 GTCTTTGTTAGAGCTCCTTGGTCTCCCATATCTCCTTGATTCATCACCAGTAACAGGGGA 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GTCTTTGTTAGAGCTCCTTGGTCTCCCATATCTCCTTGATTCATCACCAGTAACAGGGGA 1138
Query 1293 AAGAACCGATATCCCTGCTTCACTGGCTCCATCAGATCTTCCGACATATGATAGCGAAGA 1352
||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1139 AAGAACCGAGATCCCTGCTTCACCGGCTCCATCAGATATTCCGACATATGATAGCGAAGA 1198
Query 1353 AATCCCAATTGATGACATTGATGAAATAGAAGAGATGGAGGAAGCAAAAGCAGATGATCA 1412
||||| |||||||||||||||||||||||||||||| || || |||||||| ||||| |
Sbjct 1199 AATCCTAATTGATGACATTGATGAAATAGAAGAGATAGAAGAGGCAAAAGCGGATGACCC 1258
Query 1413 TACAAGAGACGATGCATGAATATCTCCATTCCAGTGGTC 1451
|||||||||||| ||||||||||||||||||||||||||
Sbjct 1259 TACAAGAGACGAGGCATGAATATCTCCATTCCAGTGGTC 1297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62277550575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5