BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31780.2
Length=1998
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944801 jgi|Araly1|944801|scaffold_701030.1 2715 0.0
> Ahg944801 jgi|Araly1|944801|scaffold_701030.1
Length=1644
Score = 2715 bits (1470), Expect = 0.0
Identities = 1589/1647 (96%), Gaps = 6/1647 (0%)
Strand=Plus/Plus
Query 206 tctctctctctATCAAATATGCAAAACCCTTCAACGGTAACCCAGGAATCAGCCGCACCG 265
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3 TCTCTCTCTCTATCAAATATGCAAAACCCTTCAACGGTAACCCAGGAATCAGCGGCACCG 62
Query 266 GTCTTTGATTTCTTCCCACGGCTCAGAGGTTTAACCTCTAGAAATCGATCCCCGTGTTCG 325
|||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||
Sbjct 63 GTCTTTGATTTCTTCCCACGGCTCAGAGGTTTTGCCTCTCGAAATCGATCTCCGTGTTCG 122
Query 326 AATTCAGATGGGTATGCTCTCTCATCGTCCAATGCCTTGTACTTCAATGGTTTCCGGACT 385
| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 123 ATTTCAGATGGGTACGCTCTCTCATCGTCCAATGCCTTGTACTTCAATGGCTTCCGGACT 182
Query 386 TTACCCTCCCGAAGGATGGGAAAAACCCTAGCTTCCT-TGAGCTTCAACACTAAGAGCAG 444
|||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct 183 TTACCCTCCCGAAGGACGGGAAAAACCCTAGCTT-CTCTGAGCTTCAACACTAAGAGCAG 241
Query 445 TGCTGGTTCGAGTCTCCGTAGGTTTATCAGCGATTTCAATAGCTTTATTAGGTTTCACTG 504
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 TGCCGGTTCGAGTCTGCGTAGGTTTATCAGCGATTTCAATAGCTTTATTAGGTTTCACTG 301
Query 505 CGATAAAGTGGTTCCGGAGAGCTTTGCCTCCGTCGGAGGAGTCGGATTATCGAGTGATGA 564
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 302 CGATAAAGTGGTTCCGGAGAGCTTTGCCTCCGTCGGAGGAGTCGGATTGTCGAGCGATGA 361
Query 565 GAATGGGATTAGGGAAAATGGGACTGGTGGGGTTTTGGGTGAGGAGGGATTGCCGTTGAA 624
|||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 362 GAATGGGATTAGAGAAGATGGGACTGGTGGGGTTTTGGGTGAGGAGGGCTTGCCGTTGAA 421
Query 625 TGGTGTTGAAGCTGATCGGCCGAAGAAAGTTTTGATTTTGATGAGTGATACTGGTGGTGG 684
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TGGCGTCGAAGCTGATCGGCCGAAGAAAGTTTTGATTTTGATGAGTGATACTGGTGGTGG 481
Query 685 TCACAGAGCTTCTGCGGAAGCCATTAGAGCTGCTTTTAATCAGGAGTTTGGAGATGAGTA 744
||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 482 CCACAGGGCTTCTGCGGAAGCCATTAAAGCTGCTTTTAACCAGGAGTTTGGAGATGAGTA 541
Query 745 CCAGGTGTTTATTACGGATTTGTGGACAGATCATACGCCCTGGCCGTTCAACCAGCTTCC 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 CCAGGTGTTTATTACGGATTTGTGGACAGATCATACGCCCTGGCCGTTCAACCAGCTTCC 601
Query 805 CAGGAGCTATAATTTTCTGGTGAAACATGGAACTCTGTGGAAAATGACTTATTATGGTAC 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 CAGGAGCTATAATTTTCTGGTGAAACATGGAACTCTGTGGAAAATGACTTATTATGGTAC 661
Query 865 ATCTCCACGCATTGTTCATCAATCTAATTTTGCTGCAACTTCCACTTTTATTGCCAGGGA 924
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 662 ATCTCCACGCATTATTCATCAATCTAATTTTGCTGCAACTTCGACTTTTATTGCCAGGGA 721
Query 925 AATCGCCCAAGGGTTAATGAAATATCAACCAGATATCATAATCAGTGTTCATCCGTTGAT 984
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 722 AATCGCCCAAGGGTTAATGAAATATCAACCAGACATCATAATCAGTGTTCATCCGTTGAT 781
Query 985 GCAACATGTCCCACTTCGTGTCCTAAGATCAAAAGGCTTGCTTAAGAAAATCGTGTTCAC 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GCAACATGTCCCACTTCGTGTCCTAAGATCAAAAGGCTTGCTTAAGAAAATCGTGTTCAC 841
Query 1045 CACGGTTATTACAGACTTAAGCACTTGCCATCCTACATGGTTTCATAAGCTTGTGACAAG 1104
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 842 CACGGTTATTACAGACTTGAGCACTTGCCATCCCACATGGTTTCATAAGCTTGTGACAAG 901
Query 1105 ATGTTATTGCCCATCAACAGAAGTGGCAAAAAGGGCTCAAAAAGCAGGACTTGAAACATC 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 ATGTTATTGCCCATCAACAGAAGTGGCAAAAAGGGCTCAAAAAGCAGGACTTGAAACATC 961
Query 1165 ACAAATCAAAGTTTATGGCCTCCCTGTTCGACCTTCCTTTGTGAAACCAGTTCGCCCAAA 1224
||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 962 ACAAATCAAAGTTTATGGCCTTCCTGTTCGACCTTCCTTTGTGAAGCCTGTTCGCCCAAA 1021
Query 1225 GGTTGAATTAAGAAGGGAGCTAGGGATGGATGAGAATCTTCCAGCTGTTTTGTTAATGGG 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 GGTTGAATTAAGAAGGGAGCTAGGGATGGATGAGAATCTTCCAGCTGTTTTGTTAATGGG 1081
Query 1285 TGGAGGAGAAGGGATGGGTCCCATCGAGGCAACAGCAAGAGCACTTGCAGATGCTTTGTA 1344
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1082 TGGAGGAGAAGGGATGGGTCCCATCGAGGCAACAGCAAGAGCACTTGCAGATTCTTTGTA 1141
Query 1345 TGATAAGAATCTTGGTGAAGCAGTAGGTCAGGTTCTTATAATCTGTGGACGGAACAAGAA 1404
|||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1142 TGATGAGAGTCTTGGTGAAGCAGTAGGTCAGGTTCTTGTAATCTGTGGACGGAACAAGAA 1201
Query 1405 ACTCCAAAGCAAATTAAGTTCCTTAGACTGGAAAATCCCTGTCCAGGTTAAGGGGTTTAT 1464
|||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1202 ACTCCAAAGCAAATTAAGCTCCTTAGATTGGAAAATCCCAGTCCAGGTTAAGGGGTTTAT 1261
Query 1465 AACGAAAATGGAGGAATGTATGGGTGCCTGTGACTGCATCATAACAAAGGCTGGTCCAGG 1524
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 AACGAAGATGGAGGAATGTATGGGTGCCTGTGACTGCATCATAACAAAGGCTGGTCCAGG 1321
Query 1525 CACTATAGCTGAAGCTATGATAAGAGGGTTACCGATAATCTTAAACGGTTACATCGCTGG 1584
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1322 GACTATAGCTGAAGCTATGATAAGAGGGCTACCGATAATCTTAAACGGTTACATTGCTGG 1381
Query 1585 TCAAGAGGCAGGGAATGTACCGTACGTGGTGGAAAACGGATGTGGGAAATTCTCAAAATC 1644
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1382 TCAAGAGGCAGGGAATGTACCGTACGTGGTGGAGAACGGATGTGGGAAATTCTCAAAATC 1441
Query 1645 ACCGAAAGAGATATCGAAGATTGTAGCGGATTGGTTTGGACCGGCATCGAAAGAGTTGGA 1704
||| |||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1442 ACCAAAAGAGATATCGAAAATTGCAGCGGATTGGTTTGGACCGGCATCGAAAGAGCTGGA 1501
Query 1705 GATAATGTCACAGAATGCATTGAGGCTGGCTAAACCAGAAGCAGTGTTCAAGATAGTGCA 1764
|||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||
Sbjct 1502 GATAATGTCACAGAATGCATTGAGACTGGCTAGACCAGAAGCGGTGTTCAAGATAGTGCA 1561
Query 1765 TGATATGCACGAGCTTGTCCGTaaaaaaaaTAGTCTTCCTCAACTCTCTTGCACTGCCTA 1824
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1562 TGATATGCACGAGCTTGTCCGTCAAAAAAATTGTCTTCCTCAACTCTCTTGCACTGCCTA 1621
Query 1825 ATAATCTATATATGTTGTAACTCTATT 1851
||||| |||| | | |||||||||||
Sbjct 1622 ATAAT--ATATCT-T-GTAACTCTATT 1644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75113963140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5