BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31790.1
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888940 jgi|Araly1|888940|Al_scaffold_0007_926 1391 0.0
> Ahg888940 jgi|Araly1|888940|Al_scaffold_0007_926
Length=834
Score = 1391 bits (753), Expect = 0.0
Identities = 807/834 (97%), Gaps = 0/834 (0%)
Strand=Plus/Plus
Query 124 ATGTTGTACATTATAGGGTTAGGTTTAGGAGATGAAAAAGATATAACCTTGAGAGGACTC 183
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTGTATATTATAGGGTTAGGTTTAGGAGATGAAAAAGATATAACCTTGAGAGGACTC 60
Query 184 GAGGCTGTTAAGAAATCACAGAAAGTATACATGGAAGCTTACACTTCTCTTTTGTCCTTT 243
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGGCTGTTAAGAAATCTCAGAAAGTATACATGGAAGCTTACACTTCTCTTTTGTCCTTT 120
Query 244 GGTCTCTCTGCTGATGGACTTTCCAATCTTGAAAAGTTCTATGGGAAACCAATTATACTT 303
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 GGTCTCTCTGCTGATGGTCTTTCCAATCTTGAAAAGTTTTATGGGAAACCAATTATACTT 180
Query 304 GCTGATAGAGAAATGGTGGAAGAAAAGGCTGGTGATATGATTGATGAAGCCATTGATAAT 363
|||||||||||||||||||||||||||||||||| |||||| || ||||||||| |||||
Sbjct 181 GCTGATAGAGAAATGGTGGAAGAAAAGGCTGGTGCTATGATCGAAGAAGCCATTCATAAT 240
Query 364 GATGTCGCTTTTCTCGTTGTTGGTGATCCTTTCGGAGCTACAACGCATAGTGATCTTGTT 423
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 241 GATGTCGCTTTTCTCGTTGTTGGTGATCCTTTCGGAGCTACAACACACAGTGATCTTGTT 300
Query 424 GTTCGAGCTAAGACACTCGGTGTAAAAGTAGAGGTAGTGCACAATGCATCGGTGATGAAT 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTTCGAGCTAAGACACTCGGTGTAAAAGTAGAGGTAGTGCACAATGCATCGGTGATGAAT 360
Query 484 GCTGTTGGGATTTGTGGATTGCAGCTTTACCATTATGGAGAGACTGTTTCGATCCCATTC 543
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 361 GCTGTTGGGATTTGTGGATTGCAGCTTTACCATTATGGAGAGACTGTTTCAATCCCGTTC 420
Query 544 TTTACCGAGACTTGGAGACCTGATAGTTTTTATGAGAAGATCAAGAAGAACCGCTCTCTT 603
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTTACTGAGACTTGGAGACCTGATAGTTTTTATGAGAAGATCAAGAAGAACCGCTCTCTT 480
Query 604 GGACTTCACACTCTCTGTTTGCTAGATATCCGAGTGAAGGAGCCTACTTTTGAATCTCTA 663
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGACTTCACACTCTCTGTTTGCTAGATATCCGAGTGAAGGAGCCTACTTTTGAATCTCTC 540
Query 664 TGCAGAGGAGGGAAGAAACAGTATGAACCGCCGAGGTATATGAGTGTTAATACAGCAATC 723
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 541 TGCAGAGGAGGGAAGAAACAGTATGAACCCCCGAGGTATATGAGTGTTAATACAGCGATC 600
Query 724 GAGCAGCTTCTGGAAGTTGAGCAAAAGCATGGAGATTCTGTTTATGGTGAAGACACACAG 783
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 601 GAGCAGCTTCTCGAAGTTGAGCAAAAGCACGGAGATTCTGTTTATGGAGAAGACACACAG 660
Query 784 TGTGTGGGCTTTGCCCGGCTTGGCTCTGAGGACCAGACGATAGTTGCAGGGACGATGAAG 843
|||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||
Sbjct 661 TGTGTGGGCTTTGCGCGGCTTGGCTCTGAGGACCAAAAAATAGTTGCAGGGACGATGAAG 720
Query 844 CAACTCGAAAGCGTTGATTTTGGAGCACCGTTGCATTGTCTTGTGATAGTAGGCGAGACT 903
|||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 721 CAACTCGAGAGCGTTGATTTTGGAGCACCATTGCATTGTCTTGTGATAGTAGGCCAGACT 780
Query 904 CATCCCGTGGAAGAAGAGATGTTAGAGTTTTACAAATACAAAAGTGGAAACTAA 957
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 781 CATCCCGTGGAAGAAGAGATGTTAGAGTTTTACAAATACTAAAGTGGAAACTAA 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316689370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5