BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G31790.1 Length=1452 Score E Sequences producing significant alignments: (Bits) Value Ahg888940 jgi|Araly1|888940|Al_scaffold_0007_926 1391 0.0 > Ahg888940 jgi|Araly1|888940|Al_scaffold_0007_926 Length=834 Score = 1391 bits (753), Expect = 0.0 Identities = 807/834 (97%), Gaps = 0/834 (0%) Strand=Plus/Plus Query 124 ATGTTGTACATTATAGGGTTAGGTTTAGGAGATGAAAAAGATATAACCTTGAGAGGACTC 183 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTTGTATATTATAGGGTTAGGTTTAGGAGATGAAAAAGATATAACCTTGAGAGGACTC 60 Query 184 GAGGCTGTTAAGAAATCACAGAAAGTATACATGGAAGCTTACACTTCTCTTTTGTCCTTT 243 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GAGGCTGTTAAGAAATCTCAGAAAGTATACATGGAAGCTTACACTTCTCTTTTGTCCTTT 120 Query 244 GGTCTCTCTGCTGATGGACTTTCCAATCTTGAAAAGTTCTATGGGAAACCAATTATACTT 303 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 121 GGTCTCTCTGCTGATGGTCTTTCCAATCTTGAAAAGTTTTATGGGAAACCAATTATACTT 180 Query 304 GCTGATAGAGAAATGGTGGAAGAAAAGGCTGGTGATATGATTGATGAAGCCATTGATAAT 363 |||||||||||||||||||||||||||||||||| |||||| || ||||||||| ||||| Sbjct 181 GCTGATAGAGAAATGGTGGAAGAAAAGGCTGGTGCTATGATCGAAGAAGCCATTCATAAT 240 Query 364 GATGTCGCTTTTCTCGTTGTTGGTGATCCTTTCGGAGCTACAACGCATAGTGATCTTGTT 423 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 241 GATGTCGCTTTTCTCGTTGTTGGTGATCCTTTCGGAGCTACAACACACAGTGATCTTGTT 300 Query 424 GTTCGAGCTAAGACACTCGGTGTAAAAGTAGAGGTAGTGCACAATGCATCGGTGATGAAT 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GTTCGAGCTAAGACACTCGGTGTAAAAGTAGAGGTAGTGCACAATGCATCGGTGATGAAT 360 Query 484 GCTGTTGGGATTTGTGGATTGCAGCTTTACCATTATGGAGAGACTGTTTCGATCCCATTC 543 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 361 GCTGTTGGGATTTGTGGATTGCAGCTTTACCATTATGGAGAGACTGTTTCAATCCCGTTC 420 Query 544 TTTACCGAGACTTGGAGACCTGATAGTTTTTATGAGAAGATCAAGAAGAACCGCTCTCTT 603 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TTTACTGAGACTTGGAGACCTGATAGTTTTTATGAGAAGATCAAGAAGAACCGCTCTCTT 480 Query 604 GGACTTCACACTCTCTGTTTGCTAGATATCCGAGTGAAGGAGCCTACTTTTGAATCTCTA 663 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GGACTTCACACTCTCTGTTTGCTAGATATCCGAGTGAAGGAGCCTACTTTTGAATCTCTC 540 Query 664 TGCAGAGGAGGGAAGAAACAGTATGAACCGCCGAGGTATATGAGTGTTAATACAGCAATC 723 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 541 TGCAGAGGAGGGAAGAAACAGTATGAACCCCCGAGGTATATGAGTGTTAATACAGCGATC 600 Query 724 GAGCAGCTTCTGGAAGTTGAGCAAAAGCATGGAGATTCTGTTTATGGTGAAGACACACAG 783 ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 601 GAGCAGCTTCTCGAAGTTGAGCAAAAGCACGGAGATTCTGTTTATGGAGAAGACACACAG 660 Query 784 TGTGTGGGCTTTGCCCGGCTTGGCTCTGAGGACCAGACGATAGTTGCAGGGACGATGAAG 843 |||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||| Sbjct 661 TGTGTGGGCTTTGCGCGGCTTGGCTCTGAGGACCAAAAAATAGTTGCAGGGACGATGAAG 720 Query 844 CAACTCGAAAGCGTTGATTTTGGAGCACCGTTGCATTGTCTTGTGATAGTAGGCGAGACT 903 |||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 721 CAACTCGAGAGCGTTGATTTTGGAGCACCATTGCATTGTCTTGTGATAGTAGGCCAGACT 780 Query 904 CATCCCGTGGAAGAAGAGATGTTAGAGTTTTACAAATACAAAAGTGGAAACTAA 957 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 781 CATCCCGTGGAAGAAGAGATGTTAGAGTTTTACAAATACTAAAGTGGAAACTAA 834 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54316689370 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5