BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31805.1
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328547 jgi|Araly1|328547|fgenesh1_pm.C_scaffold_7000774 1249 0.0
> Ahg328547 jgi|Araly1|328547|fgenesh1_pm.C_scaffold_7000774
Length=1827
Score = 1249 bits (676), Expect = 0.0
Identities = 781/829 (94%), Gaps = 17/829 (2%)
Strand=Plus/Plus
Query 397 CGCCTGAATAAGAGTAAAGAGCCGGAGACTAATACATTTGAGTCACAAAGCAGAG-AGTC 455
|||||||| |||||| |||||||||| ||||||||||||| ||||||||||||| || |
Sbjct 1000 CGCCTGAACCAGAGTAGAGAGCCGGAGGCTAATACATTTGAATCACAAAGCAGAGAAG-C 1058
Query 456 ACCTTTGGAAGTGGGAATTGGTTCTTTTTTGCTCTATCTTGTTGTTGCAAGTAAAACCGA 515
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1059 ACCTTTGGAAATGGGAATTGGTTCTTTTTTGTTCTATCTTGTTGTTGCAAGTAAAACCGA 1118
Query 516 GCTTGATAAGATGACAAACCTGCGAATGCAAATGGAGATGTTTCTTCTTAATGCAAAAGA 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 GCTTGATAAGATGACAAACCTGCGAATGCAAATGGAGATGTTTCTTCTTAATGCAAAAGA 1178
Query 576 ACAACTACAGAAG-AAGGA-T--A--C--A--C--CTATGTCTTCAAATGAAGCAAGCGG 623
| || |||| ||| ||| | | | | | | |||||||||||||||||||||||||
Sbjct 1179 AGAATTACACAAGAAAGAACTACAGGCAAATCCTTCTATGTCTTCAAATGAAGCAAGCGG 1238
Query 624 TTTCCAGTTTTCTCCTCAAGAATTCTCGAATTTGGCGTCATCCATTTTCCAAGAGTCATC 683
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 CTACCAGTTTTCTCCTCAAGAATTCTCGAATTTGGCGTCATCCATTTTCCAAGAGTCATC 1298
Query 684 ATCGAGTGTTCTTCAAGAGGAGTACACCGAATTCGAGGTCTCAGAGCCAGAGGATTATCG 743
|||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||
Sbjct 1299 GTCGAGTGTTCTTCAAGAGGAGTACACCGAATTCGAGGTCTCAAAACCAGAGGATCATCA 1358
Query 744 TCGAGGAACAGACTGCAACTCAAAACTCCAGGCTGAGGTAGGTAGGTTACCTCTGGGTGA 803
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1359 TCGAGGAACAGACTGCCACTCAAAACTCCAGGCTGAGGTAGGTAGGTTACCTCTGGATGA 1418
Query 804 AAAAGCAGAGGATAGACAAACAAAGCATCAGATTCAGAGACAATGCAAACTTAAAGACAA 863
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1419 AAAAGCAGAGGATAGACATACAAAGCATCAGATTCAGAGACAATGCAAACTTAAAGACAA 1478
Query 864 TGAGGTCACAAAGAGTCATATACCAGAGATGGTGGT-GT--CAGATGAAAGATATGGAGT 920
|||||||||||||||||||||||||||||||||||| || | |||||||| ||||||||
Sbjct 1479 TGAGGTCACAAAGAGTCATATACCAGAGATGGTGGTGGTGACTGATGAAAGGTATGGAGT 1538
Query 921 GTGTCCGTACGAACTAGACAAAAAGCTGCATGAACTACTGGAGACAAGGCAACAAGAAGA 980
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1539 CTGTCCGTACGAACTAGAGAAAAAGCTGCATGAACTACTGGAGACAAGGCAACAAGAAGA 1598
Query 981 GTTAGTGAAGCTTGAGACTGCTCTGAATCGTGTTGAACGCAGACTACAAGAGAAAGAAAC 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1599 GTTAGTGAAGCTTGAGACTGCTCTGAATCGTGTTGAACGCAGACTACAAGAGAAAGAAAC 1658
Query 1041 CGAGGTTTCATGGTGGAAAGACGCAGCCCGCCTGCTTGCCCAGCGTGTTCCTGAATCTTC 1100
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1659 TGAGGTTTCATGGTGGAAAGACGCAGCCCGCCTGCTTGCCCAGCGTGTGCCTGAATCTTC 1718
Query 1101 TCGGTCTGGACTAGAATGGTGCAACCCAGACTCTTCCACATGTTCAGAGCGATCTGTTCC 1160
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1719 TCAGTCTGGACTAGAATGGTGCAACCCAGACTCTTCCACATGTTCAGAACGATCTGTTCC 1778
Query 1161 AAGATCTTATGAAGCATGTTCGATACACCGCACCAGTTTTTCTAGATGA 1209
|||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1779 AAGATCTTATAAAGCATGTTCGAAACACCGCACCAGTTTTTCTAGATGA 1827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52945440550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5