BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31810.1
Length=1581
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491556 jgi|Araly1|491556|fgenesh2_kg.7__989__AT4G31810.1 2073 0.0
> Ahg491556 jgi|Araly1|491556|fgenesh2_kg.7__989__AT4G31810.1
Length=1496
Score = 2073 bits (1122), Expect = 0.0
Identities = 1311/1400 (94%), Gaps = 22/1400 (2%)
Strand=Plus/Plus
Query 1 GGAAATGATCTGACGGCTAGGAATCACCGGCGGCCATAGCTTGAGAGGCAAAACCCAAAA 60
||||||||||||||||||||||||| ||| ||| || | | | ||||||||||||
Sbjct 1 GGAAATGATCTGACGGCTAGGAATCGCCGCCGG-----GCAT-A-A-CCAAAACCCAAAA 52
Query 61 CCCTCGGAAACACAGAGGCGTCTTCTCGACGGAGAGCGAC--------AGAGATATGCAA 112
||||||||||| |||||||||||||||||||||||||||| ||||| ||||||
Sbjct 53 CCCTCGGAAACCCAGAGGCGTCTTCTCGACGGAGAGCGACAGAGTGAGAGAGAGATGCAA 112
Query 113 ACAGTGAAAGCTTTGAGGAGAGTGAGTGAACCCTTACAATGGGTTCGGTCTGTTTCTTAT 172
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 113 ACAGTGAAAGCTTTGAGGAGAGTGACTAAACCCTTACAATGGGTTCGGTCTGTTTCTTAT 172
Query 173 GGAAGACGCTTTTCTGCTCTCCCAAACTATTCCGCATCAGATGCAGATTTCGAAGACCAG 232
|||||| ||||||||||||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct 173 GGAAGAAGCTTTTCTGCTCTCCCAAACTATTCCGCAGCAGATGCTGATATCGAAGACCAG 232
Query 233 GTTCTGGTGGAAGGAAAAGCTAAATCAAGAGCTGCCATTCTCAATA-ACCCATCTTCTCT 291
||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||
Sbjct 233 GTTCTGGTGGAAGGAAAAGCTAAATCAAGAGCTGCTATTCTCAATAGTCCC-TCTTCTCT 291
Query 292 CAATGCTCTTTCTGCGCCTATGGTTGGTCGGTTAAAGAGGCTATACGAATCATGGGAAGA 351
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 292 TAATGCTCTTTCTACGCCTATGGTAGGTCGGTTAAAGAGGCTATACGAATCATGGGAAGA 351
Query 352 GAACCCAGCTATTTCCTTTGTTTTGATGAAGGGTAGCGGTAAAACTTTCTGCTCTGGTGC 411
||| ||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 352 GAATCCAGCTATTTCTTTTGTTTTGATGAAGGGTAGCGGCAAAACGTTCTGTTCTGGTGC 411
Query 412 AGATGTCTTGTCTCTTTATCACTCGATCAATGAAGGAAATACTGAAGAATCTAAACTCTT 471
|||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 412 AGATGTCTTGCCTCTGTATCACTCGATCAATGAAGGAAATACTGAAGAAAGTAAACTCTT 471
Query 472 TTTCGAGAACTTGTACAAGTTTGTATACCTCCAAGGAACGTATTTAAAACCAAATATAGC 531
|||||| |||||||||||||||||||||||||||||||| ||||| | ||||||||||||
Sbjct 472 TTTCGACAACTTGTACAAGTTTGTATACCTCCAAGGAACATATTTGAGACCAAATATAGC 531
Query 532 AATAATGGATGGTGTGACCATGGGTTGTGGTGGTGGAATTTCACTTCCAGGGATGTTTCG 591
|||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 532 TATAATGGATGGTGTAACCATGGGTTGTGGTGGTGGAGTTTCAATTCCAGGGATGTTTCG 591
Query 592 TGTGGCTACAGATAAAACTGTGTTGGCCCATCCAGAGGTCCAAATTGGTTTTCATCCTGA 651
||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 592 TGTGGCTACAGATAAGACTGTGTTGGCCCATCCAGAGGTTCAAATTGGTTTCCATCCTGA 651
Query 652 TGCAGGAGCTTCCTATTATCTTTCACGGCTTCCTGGTTATTTAGGGGAATACTTGGCTCT 711
||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 652 TGCCGGAGCTTCCTATTACCTTTCACGGCTTCCTGGCTATTTAGGGGAATACTTGGCTCT 711
Query 712 AACGGGGCAGAAACTTAATGGTGTCGAAATGATAGCATGTGGCCTTGCCACCCACTATTG 771
||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 AACAGGGCAGAAGCTAAATGGTGTCGAAATGATAGCATGTGGCCTTGCCACCCACTATTG 771
Query 772 CTTAAACGCGAGACTTCCGTTGATTGAAGAGAGGATTGGTAAACTGTTGACCGATGATCC 831
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 772 CTTAAACGCGAGACTTCCGTTGATCGAAGAGAGGATTGGTAAACTGTTGACCGATGATCC 831
Query 832 TGCTGTCATTGAGGATTCTCTTGCTCAATATGGTGATCTTGTTTACCCTGACAGTAGCAG 891
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 TGCCGTTATTGAGGATTCTCTTGCTCAATATGGTGATCTTGTTTACCCTGACAGTAGCAG 891
Query 892 CGTACTGCACAAGATAGAGTTGATTGATAAATATTTTGGGCTTGATACCGTTGAAGAAAT 951
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 892 TGTACTGCACAAGATTGAGATGATTGATAAATATTTTGGGCTTGATACCGTTGAAGAAAT 951
Query 952 CATTGAAGCTATGGAAAATGAAGCTGCTAATTCGTGCAATGAATGGTGCAAGAAAACTCT 1011
|||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 952 CATTGAGGCTATGGAAAATGAGGCTGCTAATTCTTGCAATGAATGGTGCAAGAAAACTCT 1011
Query 1012 CAAACAGATCAAAGAAGCTTCACCTTTGAGCTTAAAGATTACTTTGCAATCTATACGAGA 1071
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 CAAACAAATCAAAGAAGCTTCACCTTTGAGCTTAAAGATTACTTTGCAATCTATACGAGA 1071
Query 1072 AGGTAGATTCCAAACCCTTGATCAATGTCTCACACATGAATACCGTATATCCATTTGTGG 1131
|||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||
Sbjct 1072 AGGTAGATTCCAAACCCTTGATCAGTGTCTCACACGTGAATACCGTATATCTATTTGTGG 1131
Query 1132 AGTCTCAAA-AGTAGTCTCTGGCGACTTTTGCGAGGGTATTCGAGCCCGTTTGGTAGATA 1190
||||||||| | ||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 1132 AGTCTCAAAGAC-AGTCTCTGGCGACTTTTGCGAGGGTATACGAGCCCGTTTGGTGGACA 1190
Query 1191 AAGACTTTGCTCCAAAGTGGGATCCTCCACGCCTAGAAGATGTGAGCAAAGACATGGTGG 1250
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1191 AAGACTTTGCTCCAAAGTGGGATCCTCCACGCCTACAAGATGTGAGCAAAGACATGGTGG 1250
Query 1251 ATTGCTACTTCACGCCAGCC-TCAGAGCTCGATGATTCAGATTCTGAGTTGAAGCTGCCA 1309
||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1251 ATTGCTACTTCTCGCCAGCCAT-AGAGCTCGATGATTCAGATTCTGAGTTGAAGCTGCCA 1309
Query 1310 ACAGCTCAACGAGAGCCTTATTTTTGAGGAAAAACCTACTGATGACACTCATTACTTGCA 1369
|||||||||||||||||||| || |||||||||| |||||||||| ||||||||||||||
Sbjct 1310 ACAGCTCAACGAGAGCCTTACTTCTGAGGAAAAATCTACTGATGATACTCATTACTTGCA 1369
Query 1370 ATAAAGAATTCCACCGATCT 1389
|||||||||||||||| |||
Sbjct 1370 ATAAAGAATTCCACCGGTCT 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59230330975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5