BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G31830.1 Length=544 Score E Sequences producing significant alignments: (Bits) Value Ahg944795 jgi|Araly1|944795|scaffold_701024.1 523 4e-148 > Ahg944795 jgi|Araly1|944795|scaffold_701024.1 Length=343 Score = 523 bits (283), Expect = 4e-148 Identities = 319/337 (95%), Gaps = 0/337 (0%) Strand=Plus/Plus Query 27 TGAAGAAGGCATAAGCATGGCCGGAGAAGAAGACTGGAGAAAAACAGCAGATACGACGAA 86 ||||||| ||||||||||||| |||||||| |||||||| ||||| ||||||||||| || Sbjct 5 TGAAGAAAGCATAAGCATGGCTGGAGAAGATGACTGGAGGAAAACGGCAGATACGACAAA 64 Query 87 GATGAGCTCGGAGGGAGTAAAAGCTGCCGGCGTTGAGTCATCAAAGAGGCCGCCAGGAAG 146 |||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| Sbjct 65 GATGAGCTCGGAGGGAGTGAAAGCAGCCGGCGTTGAGTCATCCAAGAGGCCGCCAGGAAG 124 Query 147 TAATCCAGGTGGTGTTCTTCATCAACGCCGTAACTTGCCATACAGTTACACGACGATGGC 206 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 125 TAATCCAGGTGGTGTTCTTCACCAACGCCGTAACTTGCCATACAGTTACACCACGATGGC 184 Query 207 TCTAGCCGGATTAGCTATCTCGGGGGCCATCATGTACACTGTTATGTATGCTAAGAAGAA 266 ||||||||||||||||||||| || ||||||||||||||||| |||||||||||||| || Sbjct 185 TCTAGCCGGATTAGCTATCTCTGGTGCCATCATGTACACTGTAATGTATGCTAAGAAAAA 244 Query 267 GCCGGAAGCCACTGCCACTGATGTAGCTAAGGCTGCCACAGGGACGGCTAAACCTGAAGA 326 ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 245 GCCGGAAGCTACTGCCACTGATGTAGCTAAGGCTGCCACAGGGACAGCTAAACCCGAAGA 304 Query 327 TACACATCCAAGAAAGTAAAATTTCAAGGGAAGAATT 363 ||||||||||||||||||||||||||||||||||||| Sbjct 305 TACACATCCAAGAAAGTAAAATTTCAAGGGAAGAATT 341 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19840906280 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5