BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G31830.1

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg944795 jgi|Araly1|944795|scaffold_701024.1                        523    4e-148


> Ahg944795 jgi|Araly1|944795|scaffold_701024.1
Length=343

 Score =  523 bits (283),  Expect = 4e-148
 Identities = 319/337 (95%), Gaps = 0/337 (0%)
 Strand=Plus/Plus

Query  27   TGAAGAAGGCATAAGCATGGCCGGAGAAGAAGACTGGAGAAAAACAGCAGATACGACGAA  86
            ||||||| ||||||||||||| |||||||| |||||||| ||||| ||||||||||| ||
Sbjct  5    TGAAGAAAGCATAAGCATGGCTGGAGAAGATGACTGGAGGAAAACGGCAGATACGACAAA  64

Query  87   GATGAGCTCGGAGGGAGTAAAAGCTGCCGGCGTTGAGTCATCAAAGAGGCCGCCAGGAAG  146
            |||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct  65   GATGAGCTCGGAGGGAGTGAAAGCAGCCGGCGTTGAGTCATCCAAGAGGCCGCCAGGAAG  124

Query  147  TAATCCAGGTGGTGTTCTTCATCAACGCCGTAACTTGCCATACAGTTACACGACGATGGC  206
            ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct  125  TAATCCAGGTGGTGTTCTTCACCAACGCCGTAACTTGCCATACAGTTACACCACGATGGC  184

Query  207  TCTAGCCGGATTAGCTATCTCGGGGGCCATCATGTACACTGTTATGTATGCTAAGAAGAA  266
            ||||||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||
Sbjct  185  TCTAGCCGGATTAGCTATCTCTGGTGCCATCATGTACACTGTAATGTATGCTAAGAAAAA  244

Query  267  GCCGGAAGCCACTGCCACTGATGTAGCTAAGGCTGCCACAGGGACGGCTAAACCTGAAGA  326
            ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct  245  GCCGGAAGCTACTGCCACTGATGTAGCTAAGGCTGCCACAGGGACAGCTAAACCCGAAGA  304

Query  327  TACACATCCAAGAAAGTAAAATTTCAAGGGAAGAATT  363
            |||||||||||||||||||||||||||||||||||||
Sbjct  305  TACACATCCAAGAAAGTAAAATTTCAAGGGAAGAATT  341



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19840906280


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5