BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31840.1
Length=883
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491553 jgi|Araly1|491553|fgenesh2_kg.7__986__AT4G31840.1 1094 0.0
Ahg481360 jgi|Araly1|481360|fgenesh2_kg.4__420__AT2G25060.1 278 6e-74
> Ahg491553 jgi|Araly1|491553|fgenesh2_kg.7__986__AT4G31840.1
Length=832
Score = 1094 bits (592), Expect = 0.0
Identities = 722/781 (92%), Gaps = 23/781 (3%)
Strand=Plus/Plus
Query 110 TAAAACACATTACACACTCTAATACTTTTAAGGTTTTAG-ATTCTAATCAATGGcttctt 168
||||||||||||||||| |||||||||| ||||||| | |||| |||||||||||||||
Sbjct 59 TAAAACACATTACACACACTAATACTTTCGAGGTTTT-GAATTCAAATCAATGGCTTCTT 117
Query 169 cttctcttttggtcaccatcttcctctgcatctctgtcttcttctt-ttcGTCCGTGAAT 227
|||||||| | || ||||||||||||||||| ||| |||||||||| || ||||||| ||
Sbjct 118 CTTCTCTTCTAGTTACCATCTTCCTCTGCATTTCTTTCTTCTTCTTCTT-GTCCGTGGAT 176
Query 228 GCAAATGAGGTTACCGTCGGTGGAAAATCCGGTGACTGGAAGATCCCTCCTTCCTCTTCT 287
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 177 GCAAATGAGGTTACCGTCGGAGGAAAATCCGGTGACTGGAAGATCCCTCCTTCCTCTTCT 236
Query 288 TTCTCCTTT-AACGAATGGGCTCAAAAGGCTCGCTTCAAAGTCGGCGACTTTATCGTATT 346
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 237 TTCT-CTTTCAACGAATGGGCTCAAAAGGCTCGCTTCAAAGTCGGCGACTTTATCGTTTT 295
Query 347 CAAGTACGAAGCCGGTAAAGACTCGGTTTTGCAAGTGACACGAGAAGCATACGAGAAATG 406
|| ||||||||||||||||||||||||| |||||||||||||||| || |||||||||||
Sbjct 296 CAGGTACGAAGCCGGTAAAGACTCGGTTCTGCAAGTGACACGAGAGGCTTACGAGAAATG 355
Query 407 CAACACCACTAGCCCTAAAGCCAGCTACACCGACGGGAACACAAAGGTGAAGCTTGACCA 466
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 356 CAACACCACTAGCCCTAAAGCCAGCTACACCGACGGGAACACAAAGGTGAAGCTAGACCA 415
Query 467 AGCTGGTCCGGTCTACTTCGTCAGTGGAACAGAGGGTCATTGTCAAAAGGGTCAGAAGCT 526
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 416 AGCCGGTCCGGTCTACTTCATCAGTGGAACAGAGGGTCATTGTCAAAAGGGTCAGAAGCT 475
Query 527 ACGCCTAGTCGTCATCACTCCTCGTAACTCTGCTTTCTCTCCAGGTCCTTCGCCATCTGA 586
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 476 ACGCCTAGTCGTCATCACTCCTCGTAACTCTGCTTTCTCTCCAGCTCCTTCGCCATCTGA 535
Query 587 GTTCGACGGTCCAGCCGTAGCTCCTACTAGTGGTGCCGCTAAGCTCGCCGGCGGATTTAG 646
|||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 536 GTTCGACGGTCCCGCCATAGCTCCTACTAGTGGTGCCGCTAAGCTCACCGGCGGATTCAG 595
Query 647 TGTCGTATTTGGGCTTGTTCTTGGATTATGGGCCTTCTTCTTTTAAAAGACAA-TT-AGT 704
|||||||||||| ||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 596 TGTCGTATTTGGCCTTGTTCTTGGATTATGGGCCTTCTTCTTTTAAAAGAGAAATTTAGT 655
Query 705 CTTAA-TTCTATTTATTAATTTTGGAATATAAAGTAGAA---A--TCTTTGTTATTTACT 758
|| || ||||||||||||||||| |||||| |||||||| | |||||||||||||||
Sbjct 656 CTGAAATTCTATTTATTAATTTTCGAATATGAAGTAGAATCTAAATCTTTGTTATTTACT 715
Query 759 ACATTAAATTTATT-TTA-ATCT-AAATTGTTCTTCCTCTT-TTTCAATTCTGGATAAAT 814
| ||| |||||||| || || | ||||||||||||||||| ||| | ||||||||||||
Sbjct 716 ATATTTAATTTATTATTTCAT-TGAAATTGTTCTTCCTCTTGTTT-ACTTCTGGATAAAT 773
Query 815 TAGTTGGATCTATCAACAATCAACAAAGA-AAACAAAACAAAAGTGAATGAGAATTTTGA 873
||||||||||||||||||||||| ||| | ||| |||| |||| ||||||||||||||||
Sbjct 774 TAGTTGGATCTATCAACAATCAAGAAAAACAAA-AAAA-AAAACTGAATGAGAATTTTGA 831
Query 874 A 874
|
Sbjct 832 A 832
> Ahg481360 jgi|Araly1|481360|fgenesh2_kg.4__420__AT2G25060.1
Length=725
Score = 278 bits (150), Expect = 6e-74
Identities = 344/434 (79%), Gaps = 28/434 (6%)
Strand=Plus/Plus
Query 155 ATCAATGGcttcttcttctcttttggtcaccatcttcct-ctgcatctctgtcttcttct 213
||| ||||||||| |||| ||| | || | ||||| || || || ||| |||| ||||
Sbjct 28 ATCTATGGCTTCTCCTTCGCTTATCGTTTCTATCTT-CTCCTTCA--TCT-TCTTATTCT 83
Query 214 -tttcGTCCGTGAATGCAAATGAGGTTACCGTCGGTGGAAAATCCGGTGACTGGAAGATC 272
| ||| || | ||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 84 CTCTCG-CC--G-CTGCAAATGAAGTAACCGTCGGTGGAAAATCCGGTGACTGGAAGATC 139
Query 273 CCTCCTTCCTCTTCTTTCTCCTTTAACGAATGGGCTCAAAAGGCTCGCTTCAAAGTCGGC 332
|||||||||||||||| ||| || | ||| ||||||||||| ||||||||||||||||||
Sbjct 140 CCTCCTTCCTCTTCTTACTCATTCACCGAGTGGGCTCAAAAAGCTCGCTTCAAAGTCGGC 199
Query 333 GACTTTATCGTATTCAAGTACGAAGCCGGTAAAGACTCGGTTTTGCAAGTGAC-ACGAGA 391
|||||||| || ||| ||||||| | |||||||||||||||||| |||| || | |||
Sbjct 200 GACTTTATTGTTTTCCGGTACGAATCTGGTAAAGACTCGGTTTTGGAAGTAACTAA-AGA 258
Query 392 AGCATACGAGAAATGCAACACCACTAGCCCTAAAGCCAGCTACACCGACGG-GAACAC-A 449
||| ||| | | ||||||||||| | |||| || | |||||| || || ||| || |
Sbjct 259 AGCTTACAACAGCTGCAACACCACGAACCCTTTGGCTAACTACACAGATGGAGAA-ACCA 317
Query 450 AAGGTGAAGCTT-GACCAAGCTGGTCCGGTCTACTTCGTCAGTGGAAC-AGAGGGTCATT 507
||| |||| || |||| ||||||| |||||||| | |||||| | | | ||||| |
Sbjct 318 AAG-TGAAA-TTAGACCGTTCTGGTCCATTCTACTTCATTAGTGGAGCTA-ATGGTCACT 374
Query 508 GTCA-AAAGGGTCAGAAGCT-ACGCCTAGTCGTCATCACTCCTCGTAACTCTG-CTTTCT 564
|| | ||||| ||||||||| | |||| ||||| |||| ||||||| || || | | ||
Sbjct 375 GTGAGAAAGG-TCAGAAGCTGA-GCCTCGTCGTGATCAGTCCTCGTCACAGTGTCAT-CT 431
Query 565 CTCCAGG-TCCTTC 577
|||| || ||||||
Sbjct 432 CTCC-GGCTCCTTC 444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32709462786
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5