BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31860.1
Length=1540
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491551 jgi|Araly1|491551|fgenesh2_kg.7__984__AT4G31860.1 2176 0.0
Ahg344104 jgi|Araly1|344104|fgenesh1_pg.C_scaffold_4000446 970 0.0
Ahg491552 jgi|Araly1|491552|fgenesh2_kg.7__985__AT4G31850.1 67.6 3e-10
> Ahg491551 jgi|Araly1|491551|fgenesh2_kg.7__984__AT4G31860.1
Length=1556
Score = 2176 bits (1178), Expect = 0.0
Identities = 1429/1541 (93%), Gaps = 53/1541 (3%)
Strand=Plus/Plus
Query 50 ACAATCTGAA-TTTGATCCCAAATCAAAA-------C-T-TTCTTCTTCTTCGTCTTCCT 99
|||||||||| |||||||||||||||||| | | |||||||||||| |||||||
Sbjct 19 ACAATCTGAATTTTGATCCCAAATCAAAACTTTCCTCTTCTTCTTCTTCTTCTTCTTCCT 78
Query 100 CTAATCAAAACTGTCTCCTACCAAAGGTCTTTCCTTTCTCCAGCCAGATATGTGAGGAAA 159
|||||||| | |||||||||||||||||||| ||||||||| |||||||||||||| |||
Sbjct 79 CTAATCAAGATTGTCTCCTACCAAAGGTCTTGCCTTTCTCCGGCCAGATATGTGAGAAAA 138
Query 160 CCAAGCTTCTCGTACAACTTCATCACCTACTTCCTTTTG-A--CGT--T-TTCAAATCTT 213
||||||||||||||||||||||||||||||||||||||| | | | | ||||||||||
Sbjct 139 CCAAGCTTCTCGTACAACTTCATCACCTACTTCCTTTTGAATTCTTCATATTCAAATCTT 198
Query 214 -G-AGAGAGATGGGTATATATCTAAGTACTCCAAAAACAGACAAGTTCTCAGAAGATGGC 271
| | ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 199 GGTAAAGAGATGGGTATATATCTAAGTACTCCTAAAACAGAAAAGTTCTCAGAAGATGGC 258
Query 272 GAAAATCATAAACTCAGATATGGTTTATCCTCTATGCAAGGTTGGCGTGCGTCCATGGAA 331
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 GAAAATGATAAACTCAGATATGGTTTATCCTCTATGCAAGGTTGGCGTGCGTCCATGGAA 318
Query 332 GATGCTCATGCTGCAATACTTGATCTCGATGATAACACTTCCTTCTTGGGTGTCTATGAT 391
||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 319 GATGCGCATGCTGCAATTCTTGATCTCGATGATAACACTTCCTTTTTGGGTGTCTATGAT 378
Query 392 GGTCATGGAGGTAAAGTTGTTTCTAAGTTCTGTGCCAAGTATCTACACCAGCAGGTTCTT 451
||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 379 GGTCATGGAGGTAAAGTTGTTTCAAAGTTCTGCGCCAAGTATCTACATCAGCAGGTTCTC 438
Query 452 AGTGATGAGGCGTATGCAGCTGGAGACGTAGGGACTTCTCTTCAAAAAGCATTTTTCAGA 511
||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 439 AGTAATGAGGCATATGCAGCTGGAGACGTAGGAACTTCTCTTCAAAAAGCATTTTTCAGA 498
Query 512 ATGGATGAGATGATGCAAGGACAAAGAGGGTGGCGAGAGTTAGCAGTACTTGGTGACAAA 571
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 499 ATGGATGAGATGATGCAAGGACAAAGAGGATGGCGAGAGTTAGCAGTACTCGGTGACAAA 558
Query 572 ATCAATAAGTTCAGTGGGATGATTGAAGGGCTTATATGGTCACCAAGAAGTGGGGACAGT 631
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 559 ATCAATAAGTTCAGCGGGATGATTGAAGGGCTTATATGGTCACCAAGAAGCGGGGATAAC 618
Query 632 GCTAATAAACCTGATGCTTGGGCGTTTGAGGAAGGTCCTCATTCTGATTTTGCTGGACCT 691
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 619 GCTAATAAACCTGATGCTTGGGCGTTTGAGGAAGGTCCTCATTCTGATTTTGCTGGGCCT 678
Query 692 AATTCTGGGAGCACGGCATGCGTAGCTGTTGTTAGAGACAAGCAGCTATTTGTTGCAAAT 751
|||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 679 AATTCTGGTAGCACGGCATGCGTAGCTGTTATTAGAGACAAACAGCTATTTGTTGCAAAT 738
Query 752 GCAGGTGACTCACGTTGTGTGATATCCAGAAAGAATCAGGCTTATAATCTTTCTAGAGAT 811
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 739 GCAGGTGACTCACGTTGTGTGATATCCAGAAAAAATCAGGCTTACAATCTTTCTAGAGAT 798
Query 812 CACAAACCAGATCTTGAAGCTGAGAAAGAAAGGATATTGAAAGCTGGTGGCTTTATACAT 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 CACAAACCAGATCTTGAAGCTGAGAAAGAAAGGATATTGAAAGCTGGTGGCTTTATACAT 858
Query 872 GCAGGGCGAGTCAATGGAAGCTTAAATCTATCACGAGCTATCGGTGACATGGAATTCAAG 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 GCAGGGCGAGTCAATGGAAGCTTAAATCTATCACGAGCTATCGGTGACATGGAATTCAAG 918
Query 932 CAGAATAAGTTTTTGCCATCTGAAAAGCAAATAGTTACCGCTAGTCCAGATGTTAACACT 991
||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| ||||||
Sbjct 919 CAGAATAAGTTTTTGTCATTTGAAAAGCAAATAGTTACCGCCAGTCCAGATGTAAACACT 978
Query 992 GTTGAACTCTGTGATGATGATGATTTCCTTGTTCTTGCCTGCGATGGAATTTGGGATTGC 1051
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 GTTGAACTCTGCGATGATGATGATTTCCTTGTTCTTGCCTGCGATGGAATTTGGGATTGC 1038
Query 1052 ATGACAAGCCAACAACTCGTTGATTTCATACATGAACAATTGAATTCAGAGACCAAACTC 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 ATGACAAGCCAACAACTCGTTGATTTCATACATGAACAATTGAATTCAGAGACCAAACTC 1098
Query 1112 TCGGTGGTATGTGAAAAAGTTCTCGATAGATGTCTGGCTCCAAACACTTCAGGTGGTGAA 1171
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1099 TCCGTGGTATGTGAAAAAGTTCTCGATAGATGTCTGGCTCCAAACACCGCAGGTGGTGAA 1158
Query 1172 GGCTGTGATAACATGACCATGATATTGGTTCGATTCAAGAA-CC----C--T--AC---- 1218
||||||||||||||||||||||| ||||||| ||||||||| || | | ||
Sbjct 1159 GGCTGTGATAACATGACCATGATCTTGGTTCAATTCAAGAAGCCTGTTCAGTCCACGGAA 1218
Query 1219 --T-C-C-ATCAGAGACCGAACTAAAACCAGAAGCAAGCCAGGCAGAAGGAAACCACGAT 1273
| | | |||||| ||||||||||||| ||| |||||||||| |||| ||||||||||
Sbjct 1219 CCTACTCCATCAGAAACCGAACTAAAACTGGAACCAAGCCAGGCCGAAGCAAACCACGAT 1278
Query 1274 GAGCCGAGCTCATCAAACTAGGCCCATCCTCAG-AG--TCACGGAAGATCCC-TCTAGAT 1329
||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||||
Sbjct 1279 GAGCCGAGCTCATCAAACTAGCCCCATCCTCAGGAGGGTCACGGAAGATCCCATCTAGAT 1338
Query 1330 CTAGTATTTTGGTTCAGATTGTAAATCATTTTGAAAGACAGTTATATATCTCAACCTGAC 1389
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1339 CTAGTATTTTGGTTCAGATTGTAAATCATTTTGAAAGACAGTTATATATCACAACCTGAC 1398
Query 1390 GTT---G---ATTTCAGTATATC-ACCATTTCCTCCGTGTGCAGACTTTTGTCTCATGAG 1442
||| | |||||||||| || ||||||| ||||| |||||||||||||||||| |||
Sbjct 1399 GTTTCTGGGGATTTCAGTAT-TCCACCATTTTCTCCGCGTGCAGACTTTTGTCTCACGAG 1457
Query 1443 CTCCCATAATGTAGAAAGGAATAATTGGTGTAAAAATGTTGTTGGCCTTAAAAGAACATA 1502
||||||||||| |||| | |||||||| ||| |||||||||||||||||||| |||||||
Sbjct 1458 CTCCCATAATGCAGAA-GAAATAATTGATGTGAAAATGTTGTTGGCCTTAAA-GAACATA 1515
Query 1503 TCATCAT---GTAAATAAACAAAACAATAAGACATTTACAC 1540
||||||| |||||||||||||||||||||||||||||||
Sbjct 1516 TCATCATCATGTAAATAAACAAAACAATAAGACATTTACAC 1556
> Ahg344104 jgi|Araly1|344104|fgenesh1_pg.C_scaffold_4000446
Length=1068
Score = 970 bits (525), Expect = 0.0
Identities = 904/1086 (83%), Gaps = 30/1086 (3%)
Strand=Plus/Plus
Query 221 ATGGGTATATATCTAAGTACTCCAAAAACAGACAAGTTCTCAGAAGATGGCGAAAATCAT 280
||||||| ||| |||||| |||| ||||| || ||||| ||||||||||| || ||| ||
Sbjct 1 ATGGGTACATACCTAAGTTCTCCTAAAACTGATAAGTTATCAGAAGATGGTGAGAATGAT 60
Query 281 AAACTCAGATATGGTTTATCCTCTATGCAAGGTTGGCGTGCGT-CCATGGAAGATGCTCA 339
|| ||||||||||||||||| ||||||||||||||||| || | ||||||||||||| ||
Sbjct 61 AATCTCAGATATGGTTTATCGTCTATGCAAGGTTGGCGCGC-TACCATGGAAGATGCGCA 119
Query 340 TGCTGCAATACTTGATCTCGATGATAACACTTCCTTCTT-GGGTGTCTATGATGGTCATG 398
||||||||| |||||||| |||||||| || || ||||| ||| || || ||||| ||||
Sbjct 120 TGCTGCAATTCTTGATCTGGATGATAAGACGTCGTTCTTCGGG-GTGTACGATGGGCATG 178
Query 399 GAGGTAAAGTTGTTTCTAAGTTCTGTGCCAAGTATCTACACCAGCAGGTTCTTAGTGATG 458
| |||||||| ||| | ||||||||||||||||||||||||||||||||| | ||| |||
Sbjct 179 GGGGTAAAGTCGTTGCAAAGTTCTGTGCCAAGTATCTACACCAGCAGGTTATCAGTAATG 238
Query 459 AGGCGTATGCAGCTGGAGACGTAGGGACTTCTCTTCAAAAAGCATTTTTCAGAATGGATG 518
| || ||| |||||||||| ||| || |||||| || ||||||||| ||||||||||
Sbjct 239 AAGCATATAAAGCTGGAGACATAGAAACAGCTCTTCGAAGAGCATTTTTTAGAATGGATG 298
Query 519 AGATGATGCAAGGACAAAGAGGGTGGCGAGAGTTAGCAGTACTTGGTGACAAAATCAATA 578
| |||||||||||||||||||| |||||||||||||| ||||| |||||||| || ||||
Sbjct 299 ACATGATGCAAGGACAAAGAGGATGGCGAGAGTTAGCTGTACTCGGTGACAAGATGAATA 358
Query 579 AGTTCAGTGGGATGATTGAAGGGCTTATATGGTCACCAAGAAGTGGGGACAGTGCTAATA 638
| || || || ||||||||||| ||||||||||||||||||| || |||| ||||||
Sbjct 359 AATTTAGCGGCATGATTGAAGGATTTATATGGTCACCAAGAAGCGGTGACA---CTAATA 415
Query 639 AAC--CT-GATGCTTGGGCGT-TTGAGGAAGGTCCTCATTCTGATTTTGCTGGACCTAAT 694
||| | ||| |||| | | ||||||| ||||||||||||||||| | ||||||| |
Sbjct 416 AACAGCCCGATAATTGGCC-TCTTGAGGATGGTCCTCATTCTGATTTCACGGGACCTACT 474
Query 695 TCTGGGAGCACGGCATGCGTAGCTGTTGTTAGAGACAAGCAGCTATTTGTTGCAAATGCA 754
|| ||| |||| |||||||||||| || ||| ||| ||| |||| ||||||||||||||
Sbjct 475 TCGGGGTGCACAGCATGCGTAGCTCTTATTAAAGATAAGAAGCTCTTTGTTGCAAATGCC 534
Query 755 GGTGACTCACGTTGTGTGATATCCAGAAAGAATCAGGCTTATAATCTTTCTAGAGATCAC 814
||||||||||||||||||||||| ||||| | ||||||||| |||||||||| |||||||
Sbjct 535 GGTGACTCACGTTGTGTGATATCAAGAAACAGTCAGGCTTACAATCTTTCTAAAGATCAC 594
Query 815 AAACCAGATCTTGAAGCTGAGAAAGAAAGGATATTGAAAGCTGGTGGCTTTATACATGCA 874
|| || |||||||||| ||| |||||||||||||||||||||||||||||||| || ||
Sbjct 595 AAGCCTGATCTTGAAGTTGAAAAAGAAAGGATATTGAAAGCTGGTGGCTTTATTCACGCT 654
Query 875 GGGCGAGTCAATGGAAGCTTAAATCT-ATCACGAGCTATCGGTGACATGGAATTCAAGCA 933
|| || ||||||||||||| ||||| | || |||| || ||||| ||||||||||||||
Sbjct 655 GGTAGAATCAATGGAAGCTTGAATCTGA-CAAGAGCCATTGGTGATATGGAATTCAAGCA 713
Query 934 GAATAAGTTTTTGCCATCTGAAAAGCAAATAGTTACCGCT-AGTCCAGATGTTAACACTG 992
||| || ||||| ||||||||||||||||| ||||| ||| | ||||||| | ||||||
Sbjct 714 GAACAAATTTTTACCATCTGAAAAGCAAATGGTTACTGCTGA-TCCAGATATAAACACTA 772
Query 993 TTGAACTCTGTGATGATGATGATTTCCTTGTTCTTGCCTGCGATGGAATTTGGGATTGCA 1052
|||| || ||||||||||||||||| |||||| |||| || |||||||| |||||||| |
Sbjct 773 TTGACCTATGTGATGATGATGATTTTCTTGTTGTTGCATGTGATGGAATATGGGATTGTA 832
Query 1053 TGACAAGCCAACAACTCGTTGATTTCATACATGAACAATTGAATTCAGAGACCAAACTCT 1112
|| ||||||| |||| || ||||| || |||||||| || || || || || ||||| |
Sbjct 833 TGTCAAGCCAGGAACTAGTGGATTTTATCCATGAACAGTTAAAATCTGAAACAAAACTTT 892
Query 1113 CGGTGGTATGTGAAAAAGTTCTCGATAGATGTCTGGCTCCAAACACTTC-AGGTGGTGAA 1171
| |||||| ||||||||| | |||| |||| |||||||| ||||| | || ||| |||
Sbjct 893 CCACGGTATGCGAAAAAGTTGTTGATAAATGTTTGGCTCCAGACACTACGAG-TGGAGAA 951
Query 1172 GGCTGTGATAACATGACCATGATATTGGTTC-GATTCAAGAACCCTA-CTCCATCAGAGA 1229
|| |||||||| |||||||| || ||||||| | |||||||| |||| | ||||| ||||
Sbjct 952 GGTTGTGATAATATGACCATCATCTTGGTTCAG-TTCAAGAAGCCTAAC-CCATCCGAGA 1009
Query 1230 CCGAACTAAAACCAGAAGCAAGCCAGGC-AGAAGGAAACCACGATGAGCCGAGCTCATCA 1288
| |||| | ||||| || ||| | |||| || | | |||||||||||||| |||
Sbjct 1010 CTGAAC-----C-AGAAG-AATCCAAACCAGAACCAAGCGAAGATGAGCCGAGCTCTTCA 1062
Query 1289 AACTAG 1294
| ||||
Sbjct 1063 AGCTAG 1068
> Ahg491552 jgi|Araly1|491552|fgenesh2_kg.7__985__AT4G31850.1
Length=3448
Score = 67.6 bits (36), Expect = 3e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Minus
Query 1502 ATCATCATGTAAATAAACAAAACAATAAGACATTTACAC 1540
||| |||||||||||||||||||||||||||||||||||
Sbjct 3448 ATCGTCATGTAAATAAACAAAACAATAAGACATTTACAC 3410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57668630930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5