BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G31877.1

Length=857
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg888927 jgi|Araly1|888927|Al_scaffold_0007_913                     279    2e-74


> Ahg888927 jgi|Araly1|888927|Al_scaffold_0007_913
Length=183

 Score =  279 bits (151),  Expect = 2e-74
 Identities = 168/176 (95%), Gaps = 1/176 (1%)
 Strand=Plus/Plus

Query  399  ATGTTCGATGCATTTGCTTCTCTTGCGTGCTCACTGCTCTATCTGTCAGATTCCGGCTCC  458
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  1    ATGTTCGATGCATTTGCTTCTCTTGCGTGCTCACTGCTCTATCTGTCAGATTTCGGCTCC  60

Query  459  GATTCGGTCCCGGTCACGTTttcttcttctaattgtgttcccatctctcactttctctct  518
            |||||||| ||| |||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct  61   GATTCGGTTCCGTTCACGTTTTCTTCTTCTAATTGTGTTCCAATCTCTCACTTTCTTTCT  120

Query  519  catgtgttcttcatctctc-aAAGGTATGAAATGTTATCTTGGGGTTTTCTTCTGG  573
            ||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||
Sbjct  121  CATGTGTTCTTCATCTCTCCAAAGGGATGTAATGTTATCTTGGGGTTTTCTTCTGG  176



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31718266944


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5