BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G31880.1 Length=2897 Score E Sequences producing significant alignments: (Bits) Value Ahg491547 jgi|Araly1|491547|fgenesh2_kg.7__980__AT4G31880.1 4303 0.0 Ahg888791 jgi|Araly1|888791|Al_scaffold_0007_777 189 1e-46 > Ahg491547 jgi|Araly1|491547|fgenesh2_kg.7__980__AT4G31880.1 Length=2844 Score = 4303 bits (2330), Expect = 0.0 Identities = 2702/2878 (94%), Gaps = 39/2878 (1%) Strand=Plus/Plus Query 23 aaaaaaCCCTAGCGTGTTGTTCAGTGACTTTGGGGGGAAAATTTCTCGTAGTTTCTTCGC 82 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1 AAAAAACCCTAGCGTGTTGTTCAGTGACTTTGGGGGGAAAATTTCTCGTAATTTCTTCGC 60 Query 83 TAAATCCGTCTTCTCATCTCTTTCCATTTGTGGAATTCAATGGAAGCTTTAGGTTTTTGG 142 ||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||| Sbjct 61 TAAATCCGTCTTCTCATCTATTTCCATTTGTGGAA-TCGATGGAAGCTTTAGGTTTTTCA 119 Query 143 TGCTGAGAATTCTCTGTTTTCGAATCTAGGGTTTGTAGAGGAGATCTATTCAATTGTAGA 202 ||||||||| ||| | |||||||||||||||||||| || |||||||||||||||||||| Sbjct 120 TGCTGAGAAGTCTGTATTTTCGAATCTAGGGTTTGTGGA-GAGATCTATTCAATTGTAGA 178 Query 203 TACGCAAGAGCGAAACGAGTCAGAAAACTAGGAGAAGGAGTCATGTCGGATTCTGATAAA 262 ||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 179 TACGCGAGAGCGAAACGAGTCAGAAACCAAGGAGAAGGAGTCATGTCGGATTCTGATAAA 238 Query 263 GAGCTCGAGAATCAGATTA-TTGAAGCTGGGGAAAAGCTTATTGACCCGCCTTCTTCACT 321 |||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||| Sbjct 239 GAGCTCGAGAATCAGA-TACTTGAAGCTGGGGAAAAGCTTATTGACCCACCTTCTTCACT 297 Query 322 CGATGAGCTTCTCTCTTTCCTTGACAAACTTTTCGTATCCCTGGCGGAGGTTGAACAGTC 381 |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 298 CGATGAGCTTCTTTCTTTCCTTGACAAACTTTTCGTATCCCTGTCGGAGGTTGAACAGTC 357 Query 382 ACCTCCCGACTCAATGCAGAATGCACTCACTCCATTGATGAAAGGATTAGTCGGTGGAAA 441 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 358 ACCTCCCGACTCAATGCAGAATGCACTCTCTCCATTGATGAAAGGATTAGTCGGTGGAAA 417 Query 442 ACTCTTCAAGCATTCAGATGTCGATGTCAAAGTTGCTGTCGCTGCCTGCATCAGTGAGAT 501 |||||||||||| || ||||||||||| || ||||| ||||||||||||||||||||||| Sbjct 418 ACTCTTCAAGCACTCGGATGTCGATGTGAAGGTTGCAGTCGCTGCCTGCATCAGTGAGAT 477 Query 502 TACAAGAATAACTGCTCCTGATGCTCCTTATGATGATGACCAGATGAAGGAAGTATTCAA 561 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 478 TACAAGAATAACTGCTCCAGATGCTCCTTATGATGATGACCAGATGAAGGAAGTATTCAA 537 Query 562 GTTGATTGTATCATCATTTGAAGATCTGGTTGACAAATCTAGTCGTTCCTATGCTAAAAG 621 |||||| |||||||||||||||||||| |||||||||||||||||||| ||| | ||||| Sbjct 538 GTTGATCGTATCATCATTTGAAGATCTAGTTGACAAATCTAGTCGTTCTTATACCAAAAG 597 Query 622 GATATCTATCCTTGAAACTGTGGCTAAGGTCAGGTCATGTGTTGTGATGTTGGATCTTGA 681 ||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 598 GATCTCAATTCTTGAAACTGTGGCTAAGGTCAGATCATGTGTTGTGATGTTGGATCTTGA 657 Query 682 GTGTGATGCACTTCTTATTGAGATGTTCCAGCATTTCCTCAAGGCTATAAGGGACCATCA 741 ||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 658 GTGTGATGCGCTTCTTATTGAGATGTTCCAGCATTTTCTGAAGGCTATAAGGGACCATCA 717 Query 742 TTCAGGGAATGTATTTTCATCTATGGAGAACATAATGACCCTTGTTTTAGAAGAAAGCGA 801 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 TTCAGCGAATGTATTTTCATCTATGGAGAACATAATGACCCTTGTTTTAGAAGAAAGCGA 777 Query 802 GGATATACCTTCAGAGATGCTTTCACCAATCCTACATTCTGTTAAAAAGGATGATGAGAT 861 |||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| Sbjct 778 GGATATACCTTCAGAGATGCTTTCACCATTTCTACATTATGTTAAAAAGGATGATGAGAT 837 Query 862 TTCCCAAGTATCACGGAGGTTGGCAGAACAAGTTCTCAGTAACTGTGCTAGCAAGCTCAA 921 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 TTCCCAAATATCACGGAGGTTGGCAGAACAAGTTCTCAGTAACTGTGCTAGCAAGCTCAA 897 Query 922 AACTTATCTGACCGAAGCAGTGAAATCGTCGGGTGTCCCTCTAGATAAGTATAGTAACAT 981 |||||||||||| |||||||||||||||| |||||||||| ||||||||||| |||| || Sbjct 898 AACTTATCTGACTGAAGCAGTGAAATCGTTGGGTGTCCCTTTAGATAAGTATGGTAAAAT 957 Query 982 AGTGGCTTCGATATGTGAAGGGACATTCAGTGCTTTGCAGCAAGACCAAGTTGTTGCAAA 1041 ||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||| Sbjct 958 AGTGGCTTCGATATGTGAAGGGACATTCAGTGCTTTGCAACAGGACCAAGTTTTTGCAAA 1017 Query 1042 TGAAAAAGAAGATAGTC-AAGGTCATATAAAAAGGGAAACGGAAGTAGAGAAGGCAGCAG 1100 ||||||||||||||| | ||||||||||| ||||||| ||||||||||||||||||||| Sbjct 1018 TGAAAAAGAAGATAG-CGAAGGTCATATATCAAGGGAAGCGGAAGTAGAGAAGGCAGCAG 1076 Query 1101 AAATTTCTACCCCTGAGCGAACTGATGCACCTAAGGATGAATCTGGTAAGTCTGGAGTTA 1160 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1077 AAATTTCTACCTCTGAGCGAACTGATGCACCTAAGGATGAATCTGGTAAGTCTGGAGTTA 1136 Query 1161 GCAATGGTGTCGCGCAACAGAATGATTCTTCGGTTGATACTGATTCCATGAAGAAGCAAG 1220 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1137 GCAATGGTGTCGCGCAACAGAATGATTCTTCGGTTGATACTGATTCCACAAAGAAGCAAG 1196 Query 1221 ACGATACGGGTGCCAAAGATGAGCCGCAGCAACTTGATAATCCTAGAAACACTGACTTGA 1280 |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1197 ACGATACGAGTGCCAAAGATGAGCCGCAACAACTTGATAATCCTAGAAACACTGACTTGG 1256 Query 1281 ATAATACTACTGAAGAGAAGCCTGATGTTGAACATCAAATTGAGGAAAAGGAAAACGAAT 1340 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||| Sbjct 1257 ATAATACTACAGAAGAGAAGCCTGATGTTGAACATCAAATTGAGGAAAAAGAAAACCAAT 1316 Query 1341 CTAGTTCTGTCAAACAGGCGGATTTATCAAAAGATTCAGATATCAAAGAAGAGACTGAAC 1400 | |||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||| Sbjct 1317 CCAGTTCTGTCAAACAGGCGGATTCATCAAAAAATTCAGATATCAAAGAGGAGACTGAAC 1376 Query 1401 CTGCAGAACTCCTGGACAGCAAGGATGTGTTAACTTCGCCTCCTGTTGATTCATCTGTTA 1460 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1377 CTGCAGAACACCTGGACAGCAAGGATGTGTTAACTTCGCCTCCTGTTGATTCATCTGTTA 1436 Query 1461 CCGCAGCCACCTCTTCTGAAAATGAAAAGAATAAAAGTGTGCAGATTTTACCATCTAAGA 1520 ||||||||| |||||||| ||||||||||||| |||||||||| |||||||||||||| Sbjct 1437 ACGCAGCCACTTCTTCTGAGAATGAAAAGAATATAAGTGTGCAGGCTTTACCATCTAAGA 1496 Query 1521 CATCAGGAGATGAAACTGCCAATGTCAGTTCTCCGTCAATGGCTGAGGAACTTCCTGAGC 1580 |||||| |||||||||| |||||||| |||||| |||| ||| ||||| |||| ||||| Sbjct 1497 CATCAGCAGATGAAACTAACAATGTCAATTCTCCATCAAGGGCCGAGGATCTTCTTGAGC 1556 Query 1581 AAAG-CGTCCCTAAGAAGACTGCAAACCAGAAGAAAAAGGAGAGCTCGACAGAGGAGGTC 1639 |||| || ||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 1557 AAAGCCG-CCCTAAGAAGACTGCAAACCAGAAGAAAAAGGAGAGCTCGACAAAGGAAGTC 1615 Query 1640 AAACCTTCTGCTTCTATTGCTACCGAAGAAGTTTCTGAAGAACCAAACACGTCTGAACCT 1699 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1616 AAACCTTCTGCTTCTATTGCTACCGAAGAAGTTTCTGAAGAACCAAACACATCTGAACCT 1675 Query 1700 CAGGTGACAAAAAAGTCTGGAAAGAAGGTTGCTTCGTCAAGTAAAACAAAGCCTACTGTT 1759 || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1676 CACGTGACAAAAAAGTCTGGAAAGAAGGTTGCTTCGTCAAGTAAAACAAAGCCTATTGTT 1735 Query 1760 CCTCCTTCAAAGAAAAGCACCTCTGAGACAAAAGTAGCCAAGCAGTCAGAGAAAAAGGTA 1819 |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| Sbjct 1736 CCTCCTTCAAAGAAAAGCACATCTGAGACAAAAGTAGCCAAGCAGTCAGAGAAAATGGTA 1795 Query 1820 GTTGGGAGTGATAATGCACAAGAATCCACAAAGCCAAAAGAGGAAAAGAAAAAACCAGGA 1879 | |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1796 GCTGGGAGTGATTATGCACAAGGATCCACAAAGCCAAAAGAGGAAAAGAAAAAACCAGGA 1855 Query 1880 CGTGGGAAAGCCATTGATGAGGAGTCATTACACACTTCATCTGGTGATAATGAAAAACCA 1939 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1856 CGTGGGAAAGCCATTGATGAGGAGTCATTACACACTTCATCTGGTGATAATGAAAAACCA 1915 Query 1940 GCTGTTTCCTCCGGAAAGCTAGCCTCAAAATCAAAGAAAGAAGCGAAGCAAACGGTAGAA 1999 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1916 GCTGTTTCCTCTGGAAAGCTAGCCTCAAAATCAAAGAAAGAAGCGAAGCAAACGGTAGAA 1975 Query 2000 GAAAGTCCTAATTCAAACACAAAGAGAAAACGAAGTTTAGGCCAAGGGAAGGCATCTGGT 2059 |||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 1976 GAAAGTCCTAATACAAACACAAAGAGAAAACGAAGTTTAGACCAAGGGAAGGCATTTGGT 2035 Query 2060 GAAAGTTTAGTTGGATCGAGGATCAAAGTCTGGTGGCCTATGGATCAAGCGTACTATAAA 2119 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2036 GAAAGTTTAGTTGGATCGAGGGTCAAAGTCTGGTGGCCTATGGATCAAGCGTACTATAAA 2095 Query 2120 GGTGTGGTCGAGT-CATATGATGCTGCAAAGAAGAA-ACATCTGGTTATCTATGATGATG 2177 |||| |||| | | ||||||||||||| ||||| || |||| |||||||||| ||||||| Sbjct 2096 GGTGAGGTC-ACTTCATATGATGCTGCTAAGAA-AAGACATATGGTTATCTACGATGATG 2153 Query 2178 GAGATCAAGAAATCTTGTATCTCAAGAATCAGAAGTGGAGTCCTCTGGATGAATCAGAAT 2237 ||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||| Sbjct 2154 GAGATCAAGAAATCTTGAATCTTAAGACTCAGAAGTGGAGTCCTCTGGATGAATCAGAAT 2213 Query 2238 TGTCACAGGATGAAGAAGCTGCTGATCAGACGGGTCAAGAGGAAGATGCCTCTACAGTGC 2297 ||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||| || Sbjct 2214 TGTCACAGGATGAAGAAGCTGCTGATCAGTCGGGTCAAGATGAAGAAGCCTCTACAACGC 2273 Query 2298 CCCTGACGAAGAAAGCTAAGACAGGCAAGCAATCAAAGATGGACAACTCATCAGCTAAAA 2357 | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2274 CACTGAGGAAGAAAGCTAAGACAGGCAAGCAATCAAAGATGGACAACTCATCAGCTAAAA 2333 Query 2358 AGGGTAGTGGAGCTGGATCAAGCAAGGCTAAAGCTACTCCTGCTTCCAAGTCCAGCAAGA 2417 ||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 2334 AGGGTGGTGGAGCTGGATCAAGCAAGTCTAAAGCTGCTCCTGCTTCCAAGTCCAGCAAGA 2393 Query 2418 CGTCCCAGGATGACAAAACAGCGAGCAAATCGAAGGATTCAaaggaagctagcagagaag 2477 |||||||||||||||||||||||||||||| || | ||||||| ||||||||| Sbjct 2394 AGTCCCAGGATGACAAAACAGCGAGCAAATC-AA--A------GGAAGCTGGCAGAGAAG 2444 Query 2478 aggaggcgagctctgaggaggagagcgaggaagaggaaCCCCCCAAAACCGTTGGTAAAT 2537 | |||| ||||||||||||||||||||||||||||||| | |||||||| |||||||||| Sbjct 2445 AAGAGGAGAGCTCTGAGGAGGAGAGCGAGGAAGAGGAAACTCCCAAAACTGTTGGTAAAT 2504 Query 2538 CAGGAAGCAGCAGGTCGAAGAAAGATATAAGCAGCGTATCGAAATCTGGGAAATCTAAAG 2597 |||||||||||| | | ||||||||||||||||||||||||||| |||| ||||| |||| Sbjct 2505 CAGGAAGCAGCAAGCCAAAGAAAGATATAAGCAGCGTATCGAAAGCTGGAAAATCCAAAG 2564 Query 2598 CTTCATCCAAGAAAAAGGAAGAGCCCTCCAAGGCAACAACTTCTTCAAAATCCAAGTCGG 2657 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct 2565 CTTCATCCAAGAAAAAGGAAGAGCCCTCCAAGACAACAACTTCTTCAAAATCCAAGTTGG 2624 Query 2658 GACCTGTGAAATCTGTACCTGCCAAAAGCAAGACAGGAAAGGGTAAAGCAAAATCTGGTT 2717 | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2625 GTCCTGTGAAATCTGTACCGGCCAAAAGCAAGACAGGAAAGGGTAAAGCAAAATCTG--- 2681 Query 2718 CTGCGTCTACACCTGCTTCGAAGGCCAAAGAGAGCGCTTCCGAGTCAGAATCTGAAGAGA 2777 || || || | |||||||||||||| ||||||||||||||||||||||| Sbjct 2682 CT---TC--CA---------A-GGCCAAAGAGAGCGATTCCGAGTCAGAATCTGAAGAGA 2726 Query 2778 CACCCAAGGAGCCAGAACCAGCAACTAAAGCGAAATCAGGCAAGTCACAGGGGAGTCAAT 2837 ||| ||||||||||||| |||| ||||||| ||||||||||||||||||||||||||| Sbjct 2727 CACTCAAGGAGCCAGAAACAGCGACTAAAGGGAAATCAGGCAAGTCACAGGGGAGTCAGG 2786 Query 2838 CAAAGTCCGGTAAGAAGAGGAAGCGATGAGTGTCTGGGCTTGTGCTCTTTTCTCTTTT 2895 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2787 CAAAGTCCGGTAAGAAGAGGAAGCGATGAGTCTCTGGGCTTGTGCTCTTTTCTCTTTT 2844 > Ahg888791 jgi|Araly1|888791|Al_scaffold_0007_777 Length=816 Score = 189 bits (102), Expect = 1e-46 Identities = 153/175 (87%), Gaps = 13/175 (7%) Strand=Plus/Plus Query 684 GTGATGCACTTCTTATTGAGATGTTCCAGCATTTCCTCAAGGCTATAAGGGACCATCATT 743 |||||||||||||||||||||||||||||||||| ||||| | | ||||||||| Sbjct 341 GTGATGCACTTCTTATTGAGATGTTCCAGCATTTACTCAA--C-----G--ACCATCATT 391 Query 744 CAGGGAATGTATTTTCATCTATGGAGAACATAATGACCCTTGTTTTAGAAGAAAGCGAGG 803 | ||||| || |||||||||||||||||||| |||||||||||| |||||||||| |||| Sbjct 392 CTGGGAAAGTGTTTTCATCTATGGAGAACATTATGACCCTTGTTGTAGAAGAAAGTGAGG 451 Query 804 ATATACCTTC-AGAGATGCTTTCACCAATCCTACATT-CTGTTAAAAAGGATGAT 856 |||||| ||| |||| ||||||||||||| ||||||| | ||||||||||||||| Sbjct 452 ATATAC-TTCCAGAGTTGCTTTCACCAATTCTACATTAC-GTTAAAAAGGATGAT 504 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 109357093395 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5