BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31880.1
Length=2897
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491547 jgi|Araly1|491547|fgenesh2_kg.7__980__AT4G31880.1 4303 0.0
Ahg888791 jgi|Araly1|888791|Al_scaffold_0007_777 189 1e-46
> Ahg491547 jgi|Araly1|491547|fgenesh2_kg.7__980__AT4G31880.1
Length=2844
Score = 4303 bits (2330), Expect = 0.0
Identities = 2702/2878 (94%), Gaps = 39/2878 (1%)
Strand=Plus/Plus
Query 23 aaaaaaCCCTAGCGTGTTGTTCAGTGACTTTGGGGGGAAAATTTCTCGTAGTTTCTTCGC 82
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 AAAAAACCCTAGCGTGTTGTTCAGTGACTTTGGGGGGAAAATTTCTCGTAATTTCTTCGC 60
Query 83 TAAATCCGTCTTCTCATCTCTTTCCATTTGTGGAATTCAATGGAAGCTTTAGGTTTTTGG 142
||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||
Sbjct 61 TAAATCCGTCTTCTCATCTATTTCCATTTGTGGAA-TCGATGGAAGCTTTAGGTTTTTCA 119
Query 143 TGCTGAGAATTCTCTGTTTTCGAATCTAGGGTTTGTAGAGGAGATCTATTCAATTGTAGA 202
||||||||| ||| | |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 120 TGCTGAGAAGTCTGTATTTTCGAATCTAGGGTTTGTGGA-GAGATCTATTCAATTGTAGA 178
Query 203 TACGCAAGAGCGAAACGAGTCAGAAAACTAGGAGAAGGAGTCATGTCGGATTCTGATAAA 262
||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 179 TACGCGAGAGCGAAACGAGTCAGAAACCAAGGAGAAGGAGTCATGTCGGATTCTGATAAA 238
Query 263 GAGCTCGAGAATCAGATTA-TTGAAGCTGGGGAAAAGCTTATTGACCCGCCTTCTTCACT 321
|||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||
Sbjct 239 GAGCTCGAGAATCAGA-TACTTGAAGCTGGGGAAAAGCTTATTGACCCACCTTCTTCACT 297
Query 322 CGATGAGCTTCTCTCTTTCCTTGACAAACTTTTCGTATCCCTGGCGGAGGTTGAACAGTC 381
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 298 CGATGAGCTTCTTTCTTTCCTTGACAAACTTTTCGTATCCCTGTCGGAGGTTGAACAGTC 357
Query 382 ACCTCCCGACTCAATGCAGAATGCACTCACTCCATTGATGAAAGGATTAGTCGGTGGAAA 441
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 358 ACCTCCCGACTCAATGCAGAATGCACTCTCTCCATTGATGAAAGGATTAGTCGGTGGAAA 417
Query 442 ACTCTTCAAGCATTCAGATGTCGATGTCAAAGTTGCTGTCGCTGCCTGCATCAGTGAGAT 501
|||||||||||| || ||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 418 ACTCTTCAAGCACTCGGATGTCGATGTGAAGGTTGCAGTCGCTGCCTGCATCAGTGAGAT 477
Query 502 TACAAGAATAACTGCTCCTGATGCTCCTTATGATGATGACCAGATGAAGGAAGTATTCAA 561
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TACAAGAATAACTGCTCCAGATGCTCCTTATGATGATGACCAGATGAAGGAAGTATTCAA 537
Query 562 GTTGATTGTATCATCATTTGAAGATCTGGTTGACAAATCTAGTCGTTCCTATGCTAAAAG 621
|||||| |||||||||||||||||||| |||||||||||||||||||| ||| | |||||
Sbjct 538 GTTGATCGTATCATCATTTGAAGATCTAGTTGACAAATCTAGTCGTTCTTATACCAAAAG 597
Query 622 GATATCTATCCTTGAAACTGTGGCTAAGGTCAGGTCATGTGTTGTGATGTTGGATCTTGA 681
||| || || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 598 GATCTCAATTCTTGAAACTGTGGCTAAGGTCAGATCATGTGTTGTGATGTTGGATCTTGA 657
Query 682 GTGTGATGCACTTCTTATTGAGATGTTCCAGCATTTCCTCAAGGCTATAAGGGACCATCA 741
||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 658 GTGTGATGCGCTTCTTATTGAGATGTTCCAGCATTTTCTGAAGGCTATAAGGGACCATCA 717
Query 742 TTCAGGGAATGTATTTTCATCTATGGAGAACATAATGACCCTTGTTTTAGAAGAAAGCGA 801
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTCAGCGAATGTATTTTCATCTATGGAGAACATAATGACCCTTGTTTTAGAAGAAAGCGA 777
Query 802 GGATATACCTTCAGAGATGCTTTCACCAATCCTACATTCTGTTAAAAAGGATGATGAGAT 861
|||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||
Sbjct 778 GGATATACCTTCAGAGATGCTTTCACCATTTCTACATTATGTTAAAAAGGATGATGAGAT 837
Query 862 TTCCCAAGTATCACGGAGGTTGGCAGAACAAGTTCTCAGTAACTGTGCTAGCAAGCTCAA 921
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TTCCCAAATATCACGGAGGTTGGCAGAACAAGTTCTCAGTAACTGTGCTAGCAAGCTCAA 897
Query 922 AACTTATCTGACCGAAGCAGTGAAATCGTCGGGTGTCCCTCTAGATAAGTATAGTAACAT 981
|||||||||||| |||||||||||||||| |||||||||| ||||||||||| |||| ||
Sbjct 898 AACTTATCTGACTGAAGCAGTGAAATCGTTGGGTGTCCCTTTAGATAAGTATGGTAAAAT 957
Query 982 AGTGGCTTCGATATGTGAAGGGACATTCAGTGCTTTGCAGCAAGACCAAGTTGTTGCAAA 1041
||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||
Sbjct 958 AGTGGCTTCGATATGTGAAGGGACATTCAGTGCTTTGCAACAGGACCAAGTTTTTGCAAA 1017
Query 1042 TGAAAAAGAAGATAGTC-AAGGTCATATAAAAAGGGAAACGGAAGTAGAGAAGGCAGCAG 1100
||||||||||||||| | ||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1018 TGAAAAAGAAGATAG-CGAAGGTCATATATCAAGGGAAGCGGAAGTAGAGAAGGCAGCAG 1076
Query 1101 AAATTTCTACCCCTGAGCGAACTGATGCACCTAAGGATGAATCTGGTAAGTCTGGAGTTA 1160
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 AAATTTCTACCTCTGAGCGAACTGATGCACCTAAGGATGAATCTGGTAAGTCTGGAGTTA 1136
Query 1161 GCAATGGTGTCGCGCAACAGAATGATTCTTCGGTTGATACTGATTCCATGAAGAAGCAAG 1220
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1137 GCAATGGTGTCGCGCAACAGAATGATTCTTCGGTTGATACTGATTCCACAAAGAAGCAAG 1196
Query 1221 ACGATACGGGTGCCAAAGATGAGCCGCAGCAACTTGATAATCCTAGAAACACTGACTTGA 1280
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1197 ACGATACGAGTGCCAAAGATGAGCCGCAACAACTTGATAATCCTAGAAACACTGACTTGG 1256
Query 1281 ATAATACTACTGAAGAGAAGCCTGATGTTGAACATCAAATTGAGGAAAAGGAAAACGAAT 1340
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1257 ATAATACTACAGAAGAGAAGCCTGATGTTGAACATCAAATTGAGGAAAAAGAAAACCAAT 1316
Query 1341 CTAGTTCTGTCAAACAGGCGGATTTATCAAAAGATTCAGATATCAAAGAAGAGACTGAAC 1400
| |||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||
Sbjct 1317 CCAGTTCTGTCAAACAGGCGGATTCATCAAAAAATTCAGATATCAAAGAGGAGACTGAAC 1376
Query 1401 CTGCAGAACTCCTGGACAGCAAGGATGTGTTAACTTCGCCTCCTGTTGATTCATCTGTTA 1460
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 CTGCAGAACACCTGGACAGCAAGGATGTGTTAACTTCGCCTCCTGTTGATTCATCTGTTA 1436
Query 1461 CCGCAGCCACCTCTTCTGAAAATGAAAAGAATAAAAGTGTGCAGATTTTACCATCTAAGA 1520
||||||||| |||||||| ||||||||||||| |||||||||| ||||||||||||||
Sbjct 1437 ACGCAGCCACTTCTTCTGAGAATGAAAAGAATATAAGTGTGCAGGCTTTACCATCTAAGA 1496
Query 1521 CATCAGGAGATGAAACTGCCAATGTCAGTTCTCCGTCAATGGCTGAGGAACTTCCTGAGC 1580
|||||| |||||||||| |||||||| |||||| |||| ||| ||||| |||| |||||
Sbjct 1497 CATCAGCAGATGAAACTAACAATGTCAATTCTCCATCAAGGGCCGAGGATCTTCTTGAGC 1556
Query 1581 AAAG-CGTCCCTAAGAAGACTGCAAACCAGAAGAAAAAGGAGAGCTCGACAGAGGAGGTC 1639
|||| || ||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1557 AAAGCCG-CCCTAAGAAGACTGCAAACCAGAAGAAAAAGGAGAGCTCGACAAAGGAAGTC 1615
Query 1640 AAACCTTCTGCTTCTATTGCTACCGAAGAAGTTTCTGAAGAACCAAACACGTCTGAACCT 1699
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1616 AAACCTTCTGCTTCTATTGCTACCGAAGAAGTTTCTGAAGAACCAAACACATCTGAACCT 1675
Query 1700 CAGGTGACAAAAAAGTCTGGAAAGAAGGTTGCTTCGTCAAGTAAAACAAAGCCTACTGTT 1759
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1676 CACGTGACAAAAAAGTCTGGAAAGAAGGTTGCTTCGTCAAGTAAAACAAAGCCTATTGTT 1735
Query 1760 CCTCCTTCAAAGAAAAGCACCTCTGAGACAAAAGTAGCCAAGCAGTCAGAGAAAAAGGTA 1819
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1736 CCTCCTTCAAAGAAAAGCACATCTGAGACAAAAGTAGCCAAGCAGTCAGAGAAAATGGTA 1795
Query 1820 GTTGGGAGTGATAATGCACAAGAATCCACAAAGCCAAAAGAGGAAAAGAAAAAACCAGGA 1879
| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1796 GCTGGGAGTGATTATGCACAAGGATCCACAAAGCCAAAAGAGGAAAAGAAAAAACCAGGA 1855
Query 1880 CGTGGGAAAGCCATTGATGAGGAGTCATTACACACTTCATCTGGTGATAATGAAAAACCA 1939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 CGTGGGAAAGCCATTGATGAGGAGTCATTACACACTTCATCTGGTGATAATGAAAAACCA 1915
Query 1940 GCTGTTTCCTCCGGAAAGCTAGCCTCAAAATCAAAGAAAGAAGCGAAGCAAACGGTAGAA 1999
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 GCTGTTTCCTCTGGAAAGCTAGCCTCAAAATCAAAGAAAGAAGCGAAGCAAACGGTAGAA 1975
Query 2000 GAAAGTCCTAATTCAAACACAAAGAGAAAACGAAGTTTAGGCCAAGGGAAGGCATCTGGT 2059
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1976 GAAAGTCCTAATACAAACACAAAGAGAAAACGAAGTTTAGACCAAGGGAAGGCATTTGGT 2035
Query 2060 GAAAGTTTAGTTGGATCGAGGATCAAAGTCTGGTGGCCTATGGATCAAGCGTACTATAAA 2119
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2036 GAAAGTTTAGTTGGATCGAGGGTCAAAGTCTGGTGGCCTATGGATCAAGCGTACTATAAA 2095
Query 2120 GGTGTGGTCGAGT-CATATGATGCTGCAAAGAAGAA-ACATCTGGTTATCTATGATGATG 2177
|||| |||| | | ||||||||||||| ||||| || |||| |||||||||| |||||||
Sbjct 2096 GGTGAGGTC-ACTTCATATGATGCTGCTAAGAA-AAGACATATGGTTATCTACGATGATG 2153
Query 2178 GAGATCAAGAAATCTTGTATCTCAAGAATCAGAAGTGGAGTCCTCTGGATGAATCAGAAT 2237
||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||
Sbjct 2154 GAGATCAAGAAATCTTGAATCTTAAGACTCAGAAGTGGAGTCCTCTGGATGAATCAGAAT 2213
Query 2238 TGTCACAGGATGAAGAAGCTGCTGATCAGACGGGTCAAGAGGAAGATGCCTCTACAGTGC 2297
||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||| ||
Sbjct 2214 TGTCACAGGATGAAGAAGCTGCTGATCAGTCGGGTCAAGATGAAGAAGCCTCTACAACGC 2273
Query 2298 CCCTGACGAAGAAAGCTAAGACAGGCAAGCAATCAAAGATGGACAACTCATCAGCTAAAA 2357
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2274 CACTGAGGAAGAAAGCTAAGACAGGCAAGCAATCAAAGATGGACAACTCATCAGCTAAAA 2333
Query 2358 AGGGTAGTGGAGCTGGATCAAGCAAGGCTAAAGCTACTCCTGCTTCCAAGTCCAGCAAGA 2417
||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 2334 AGGGTGGTGGAGCTGGATCAAGCAAGTCTAAAGCTGCTCCTGCTTCCAAGTCCAGCAAGA 2393
Query 2418 CGTCCCAGGATGACAAAACAGCGAGCAAATCGAAGGATTCAaaggaagctagcagagaag 2477
|||||||||||||||||||||||||||||| || | ||||||| |||||||||
Sbjct 2394 AGTCCCAGGATGACAAAACAGCGAGCAAATC-AA--A------GGAAGCTGGCAGAGAAG 2444
Query 2478 aggaggcgagctctgaggaggagagcgaggaagaggaaCCCCCCAAAACCGTTGGTAAAT 2537
| |||| ||||||||||||||||||||||||||||||| | |||||||| ||||||||||
Sbjct 2445 AAGAGGAGAGCTCTGAGGAGGAGAGCGAGGAAGAGGAAACTCCCAAAACTGTTGGTAAAT 2504
Query 2538 CAGGAAGCAGCAGGTCGAAGAAAGATATAAGCAGCGTATCGAAATCTGGGAAATCTAAAG 2597
|||||||||||| | | ||||||||||||||||||||||||||| |||| ||||| ||||
Sbjct 2505 CAGGAAGCAGCAAGCCAAAGAAAGATATAAGCAGCGTATCGAAAGCTGGAAAATCCAAAG 2564
Query 2598 CTTCATCCAAGAAAAAGGAAGAGCCCTCCAAGGCAACAACTTCTTCAAAATCCAAGTCGG 2657
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 2565 CTTCATCCAAGAAAAAGGAAGAGCCCTCCAAGACAACAACTTCTTCAAAATCCAAGTTGG 2624
Query 2658 GACCTGTGAAATCTGTACCTGCCAAAAGCAAGACAGGAAAGGGTAAAGCAAAATCTGGTT 2717
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2625 GTCCTGTGAAATCTGTACCGGCCAAAAGCAAGACAGGAAAGGGTAAAGCAAAATCTG--- 2681
Query 2718 CTGCGTCTACACCTGCTTCGAAGGCCAAAGAGAGCGCTTCCGAGTCAGAATCTGAAGAGA 2777
|| || || | |||||||||||||| |||||||||||||||||||||||
Sbjct 2682 CT---TC--CA---------A-GGCCAAAGAGAGCGATTCCGAGTCAGAATCTGAAGAGA 2726
Query 2778 CACCCAAGGAGCCAGAACCAGCAACTAAAGCGAAATCAGGCAAGTCACAGGGGAGTCAAT 2837
||| ||||||||||||| |||| ||||||| |||||||||||||||||||||||||||
Sbjct 2727 CACTCAAGGAGCCAGAAACAGCGACTAAAGGGAAATCAGGCAAGTCACAGGGGAGTCAGG 2786
Query 2838 CAAAGTCCGGTAAGAAGAGGAAGCGATGAGTGTCTGGGCTTGTGCTCTTTTCTCTTTT 2895
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2787 CAAAGTCCGGTAAGAAGAGGAAGCGATGAGTCTCTGGGCTTGTGCTCTTTTCTCTTTT 2844
> Ahg888791 jgi|Araly1|888791|Al_scaffold_0007_777
Length=816
Score = 189 bits (102), Expect = 1e-46
Identities = 153/175 (87%), Gaps = 13/175 (7%)
Strand=Plus/Plus
Query 684 GTGATGCACTTCTTATTGAGATGTTCCAGCATTTCCTCAAGGCTATAAGGGACCATCATT 743
|||||||||||||||||||||||||||||||||| ||||| | | |||||||||
Sbjct 341 GTGATGCACTTCTTATTGAGATGTTCCAGCATTTACTCAA--C-----G--ACCATCATT 391
Query 744 CAGGGAATGTATTTTCATCTATGGAGAACATAATGACCCTTGTTTTAGAAGAAAGCGAGG 803
| ||||| || |||||||||||||||||||| |||||||||||| |||||||||| ||||
Sbjct 392 CTGGGAAAGTGTTTTCATCTATGGAGAACATTATGACCCTTGTTGTAGAAGAAAGTGAGG 451
Query 804 ATATACCTTC-AGAGATGCTTTCACCAATCCTACATT-CTGTTAAAAAGGATGAT 856
|||||| ||| |||| ||||||||||||| ||||||| | |||||||||||||||
Sbjct 452 ATATAC-TTCCAGAGTTGCTTTCACCAATTCTACATTAC-GTTAAAAAGGATGAT 504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109357093395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5