BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31890.1
Length=2041
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491546 jgi|Araly1|491546|fgenesh2_kg.7__979__AT4G31890.1 3016 0.0
Ahg344110 jgi|Araly1|344110|fgenesh1_pg.C_scaffold_4000452 534 8e-151
> Ahg491546 jgi|Araly1|491546|fgenesh2_kg.7__979__AT4G31890.1
Length=1945
Score = 3016 bits (1633), Expect = 0.0
Identities = 1846/1951 (95%), Gaps = 6/1951 (0%)
Strand=Plus/Plus
Query 33 AAAGAACTGATCGGAGAATCACAACCATGGCTAAATGTCACCGGAATAATATCGGATCTC 92
||||||||||||||||| | ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1 AAAGAACTGATCGGAGATTAACAACAATGGCTAAATGTCACCGGAATAACATCGGATCTC 60
Query 93 TCATTCTTGACCGTGCTCCTTCCACTTCTTCTTCTTCTACTTCCGGCTACCATTTCCGTC 152
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TCATTCTTGACCGTGCTCCTTCCACTTCTTCTTCTTCTACTTCCGGCAACCATTTCCGTC 120
Query 153 TCTGGAGCACCTTCTCTAGATCCACATTCCGTAGAAAGATCGTCGACGCCGTTAGTTGCG 212
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 121 TCTGGAGCACCTTCTCTAGATCCACATTCCGCAGAAAGATCGTCGACGCCGTTAGTTGTG 180
Query 213 GCGGTAGCTCACGTTACCGTCACGAGCTCCGGGAAGAGGACGATGAAGGAAGTTACGTGA 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCGGTAGCTCACGTTACCGTCACGAGCTCCGGGAAGAGGACGATGAAGGAAGTTACGTGA 240
Query 273 CGGTGACGGCGAAGTCAACAGTTGCATCATCGAAAGATGCGAAAGCTAATACGATCGGCG 332
||||||||||||||||||||| | | ||||||| ||||||||||| || ||||||||||
Sbjct 241 CGGTGACGGCGAAGTCAACAG-T-C-GCATCGAAGGATGCGAAAGCCAACACGATCGGCG 297
Query 333 CGGCGTTGAACGGCGTAGCGTTCGAGGAGACATCGAAGAAATCGGAGAAGCTTTGTGATC 392
|||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||
Sbjct 298 CGGCGTTGAACGGCGTAGCGTTCGAGGAGAAATCGAAAAAATCAGAGAAGCTTTGTGATC 357
Query 393 TGTTGAATCTAGCTGAAGTTGAAGCTGATGTTGAGACGATGAAGAAAGAGGAAGCTCTTG 452
|||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 358 TGTTGAATCTAGCTGAGGTTGAAGCTGATGTTGAGACGAAGAAGAAAGAAGAAGCTCTTG 417
Query 453 AGGTTTTGAAGCGCGTGGTCAGAGAGTTACAATCAGCTGCGGCGGCGCGTGAAGATAACG 512
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 418 AGGTGTTGAAGCGCGTGGTCAGAGAGTTACAATCAGCTGCGGCGGCGCGTGGAGATAACG 477
Query 513 ATGACGGAGGAGACTGTCGGAAGAAAATAACGGCGGCGAGTGAGGTACGGTTGTTGGCGA 572
|||||| | ||||| |||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 478 ATGACGTCGAAGACTATCGGAAGAAATTAACGGCGGCGAGTGAGGTACGGTTGTTGGCTA 537
Query 573 AGGAAGACTCGGAGGCGAGAGTGACGTTGGCGATGCTCGGTGCGATTCCGCCGTTAGTTA 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AGGAAGACTCGGAGGCGAGAGTGACGTTGGCGATGCTCGGTGCGATTCCGCCGTTAGTTA 597
Query 633 GTATGATCGATGACTCGAGAATCGTAGATGCTCAGATCGCTTCGCTTTATGCTCTGCTCA 692
|||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||| |
Sbjct 598 GTATGATCGACGACTCGAGAATCGTAGATGCTCAGATCGATTCGCTCTATGCTCTGCTAA 657
Query 693 ATCTTGGGATTGGTAATGACGCGAACAAAGCAGCGATTGTTAAAGCAGGTGCTGTTCACA 752
|||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 658 ATCTTGGGATTGGTAACGACACGAACAAAGCAGCCATTGTTAAAGCAGGTGCTGTTCACA 717
Query 753 AAATGCTGAAGCTAATTGAGTCTCCAAACACTCCTGATCAAGAGATTGCAGAAGCTGTGG 812
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 718 AAATGTTGAAGCTAATTGAGTCTCCAAACACTCCTGATCAAGAAATTGCAGAAGCTGTGG 777
Query 813 TCGCTAATTTTCTTGGATTAAGCGCTTTAGATTCAAACAAACCGATTATTGGTTCTTCTG 872
| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 778 TTGCCAATTTTCTTGGATTAAGCGCTTTAGATTCAAACAAACCGATCATTGGTTCTTCGG 837
Query 873 GAGCTATAATCTTCCTGGTGAAAACTCTTCAGAATTTGGATGAAACAAGTAGCTCACAAG 932
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 838 GAGCGATAATCTTCCTGGTGAAAACTCTTCAGAATTTGGATGAAACAAGCAGCTCACAAG 897
Query 933 CGAGAGAGGACGCATTGAGAGCTCTCTACAACCTCTCAATCTATCAACCAAACGTTTCGT 992
||||||| ||||| ||||||||||||||||| || ||||||||||||||||| ||||| |
Sbjct 898 CGAGAGAAGACGCCTTGAGAGCTCTCTACAATCTGTCAATCTATCAACCAAATGTTTCAT 957
Query 993 TTATCCTTGAAACCGATTTGATCACGTATCTTTTGAACACATTGGGAGATATGGAAGTGA 1052
| || |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 958 TCATACTTGAAACGGATTTGATCACGTATCTCTTGAACACATTGGGAGATATGGAGGTGA 1017
Query 1053 GTGAGAGGATTCTCGCTATCTTGAGCAATTTAGTGGCAGTCCCTGAAGGAAGAAAAGCAA 1112
||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||
Sbjct 1018 GTGAGAGGATTCTCGCTATCTTGAGCAATCTAGTGGCTGTCCCAGAAGGAAGAAAAGCAA 1077
Query 1113 TCGGTTTGGTGTGCGACGCATTCCCGGTTTTAGTCGATGTACTGAACTGGACTGACTCAC 1172
|| |||| |||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 1078 TCAGTTTAGTGTGCGACGCATTCCCGGTTTTAGTCGATGTACTGAACTGGACCGATTCTC 1137
Query 1173 CGGGGTGCCAAGAAAAGGCGACTTACATTCTAATGTTGATGGCTCACAAGGGATACGGAG 1232
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CCGGATGCCAAGAAAAGGCGACTTACATTCTAATGTTGATGGCTCACAAGGGATACGGAG 1197
Query 1233 ATAGACAAGTGATGATTGAGGCGGGAATCGAATCAGCGTTGCTCGAGTTAACTCTTTTAG 1292
|| |||||| |||||||||||||||||| || |||||||||||||| ||||| |||||||
Sbjct 1198 ATCGACAAGCGATGATTGAGGCGGGAATAGAGTCAGCGTTGCTCGAATTAACCCTTTTAG 1257
Query 1293 GAAGTGCACTGGCACAAAAGAGAGCATCAAGGATATTAGAGTGTCTTAGAGTAGACAAAG 1352
|||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1258 GAAGTGCATTGGCACAAAAGAGAGCATCGAGGATATTAGAGTGTCTTAGAGTGGACAAAG 1317
Query 1353 GAAAGCAAGTCCTGGATAGTACAGGATCATGCGGAGCCTTATCCGCACCGATATACGGGA 1412
| ||||||||| |||||||||| |||||||||||||||||||||||||| || || ||||
Sbjct 1318 GGAAGCAAGTCTTGGATAGTACCGGATCATGCGGAGCCTTATCCGCACCCATCTATGGGA 1377
Query 1413 CCAGAGACAACGGTTTGGACCACGAGGAAAACGATTTGATGATGAGCGAAGAGAGGAAAG 1472
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1378 CCAGAGACAACGGTTTGGACCACGAGGAAAACGATTTAATGATGAGCGAAGAGAGGAAAG 1437
Query 1473 CCGTGAAACAGTTAGTGCAACAGAGTTTACAGAGTAATATGAAGAGAATTGTGAAGAGAG 1532
||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1438 CCGTGAAGCAGTTAGTGCAACAGAGTTTACAGAGCAATATGAAGAGAATCGTGAAGAGAG 1497
Query 1533 CTAATTTGCCACAAGACTTTGTTCCTTCAGAGCATTTCAAGTCACTAAGTTTGAGCTCCA 1592
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1498 CTAATTTGCCACAAGGCTTTGTTCCTTCAGAGCATTTCAAGTCACTTAGTTTGAGCTCCA 1557
Query 1593 CTTCAAAGAGCCTTCCCTTTTGAAAAATGTGTCATCATGATTCATGAAGCATTTCTACAA 1652
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 CTTCAAAGAGCCTCCCCTTTTGAAAAATGTGTCATCATGATTCATGAAGCATTTCTACAA 1617
Query 1653 AAATAATAGAGAGAAAGACACATATGAGCTGATTTAACAAGAGGAAATAAAAACAAAGAA 1712
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1618 AAATAATAGAGAGAAAGACACATATGAGCTGATTTAACAAGAGGAGCTAAAAACAA-GAA 1676
Query 1713 GAGTGTTGTTGCTTCGCCAGATCTCATCAGCTTCTGAGGTATGCGACAAATGTGCTCAGA 1772
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1677 GAGTGTTGTTGCTTCGGTAGATCTCATCAGCTTCTGAGGTATGCGACAAATTTGCTCAGA 1736
Query 1773 CACAATCTAATATAATGCATAGTACTCAAGGTACGATGTGTCGTTGTGTTTGAGTTAACt 1832
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 1737 CACAATCTAATATAATGCATAGTACTCAAGGTACGGTGTGTCGTTGTGTTGGAGTTACCT 1796
Query 1833 ttttttttGGTTTGGTTGGTGGTTTTGTTAAAAGTAAAAAAGCCAAATTGGTCTACTAGG 1892
|||||||||||| |||| ||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1797 TTTTTTTTGGTTGGGTTATTGGTTTTGTTAAAAGTAAAAAAGGCAA-TTGGTCTACTAGG 1855
Query 1893 CTTAGCGTGAAAAGTATTGTTATAAAGTTATAGAGTTTGTTAGCTTTTACTTTTACCAAT 1952
||||| ||||||||||| ||||||||||||| || |||||||||||||||||||||||||
Sbjct 1856 CTTAGTGTGAAAAGTAT-GTTATAAAGTTATGGACTTTGTTAGCTTTTACTTTTACCAAT 1914
Query 1953 TTTATCAGCTTTTTTACTATTATTATATGGT 1983
|||||||||||||| ||||||||||||||||
Sbjct 1915 TTTATCAGCTTTTTAACTATTATTATATGGT 1945
> Ahg344110 jgi|Araly1|344110|fgenesh1_pg.C_scaffold_4000452
Length=1398
Score = 534 bits (289), Expect = 8e-151
Identities = 673/853 (79%), Gaps = 48/853 (6%)
Strand=Plus/Plus
Query 532 GAAGAAAATAACGGCGGCGAGTGAGG-TACGGTTGTTGGCGAAGGAAGACT-CGGAGGCG 589
|||||||||| ||||||| ||||||| || ||||||| || || || || | ||||||||
Sbjct 366 GAAGAAAATAGCGGCGGCTAGTGAGGTTA-GGTTGTTAGCAAAAGATGA-TACGGAGGCG 423
Query 590 AGAGTGAC-GTTGGCGATGCTCGGTGCGATTCCGCCGTTAGTTAGTATGATCGATGACTC 648
|||||||| || |||||||||||||||||||| ||||| |||||||||||||| ||| |
Sbjct 424 AGAGTGACACTT-GCGATGCTCGGTGCGATTCCACCGTTGGTTAGTATGATCGACGAC-C 481
Query 649 GAGAATCGTAGATGCTCAGATCGCTTCGCTTTATGCTCTGCTCAATCTTGGGATTGGTAA 708
| | ||| | || |||||||||||||| ||||| |||||||| || || || ||
Sbjct 482 ----A-C---GATTCACAAATCGCTTCGCTTTACGCTCTTCTCAATCTCGGAATCGGCAA 533
Query 709 TGACGCGAACAAAGCAGCGATTGTTAAAGCAGGTGCTGTTCACAAAATGCTGAAGCTAAT 768
|| | |||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 534 CGATGTGAACAAAGCAGCCATTGTTAAAGCAGAAGCTGTTCACAAAATGCTGAAGCTAAT 593
Query 769 TGAGTC-TCCAAA-CACTCCTGATCAAGAGATTGCAGAAGCTGTGGTCGCTAATTTTCTT 826
|||||| || ||| | |||| |||||| |||| | || ||| | ||||| ||||| ||
Sbjct 594 TGAGTCATC-AAAGC-CTCCAAATCAAGCGATTTCGGAGGCTATTGTCGCGAATTTCCTA 651
Query 827 GGATTAAGCGCTTTAGATTCAAACAAACCGATTATTGGTTCTTCTGGAGCTATAATCTTC 886
|| ||||||| |||||| | || |||||||| || ||||| || || || || |||||
Sbjct 652 GGGCTAAGCGCATTAGATGCCAATAAACCGATCATCGGTTCCTCGGGTGCAATTATCTTT 711
Query 887 CTGGTGAAAACTCTTCAGAAT-TTGGATGAAACAAGTAGCTCACAAGCGAGAGAGGACGC 945
|| ||||||||| || | || || || ||||| || ||||||||||| ||||| |||||
Sbjct 712 CTAGTGAAAACT-TTGAAAAACTTCGAGGAAACTAGCAGCTCACAAGCTAGAGAAGACGC 770
Query 946 A-TTGAGAGCTCTCTACAACCTCTCAATCTATCAACCAAACGTTT-CGTTTATCCTTGAA 1003
|| ||||||| |||||||| |||||| |||||| |||||||| | || |||||||||
Sbjct 771 TCTTC-GAGCTCTTTACAACCTTTCAATCAATCAACAAAACGTTTTC-TTCATCCTTGAA 828
Query 1004 ACCGATTTGAT-CACGTATCTTTTGAACACATTGGGAGATATGGAAGTGAGTGAGAGGAT 1062
|| |||||||| | | ||||| ||||||||||||||||| |||||||| || ||||||||
Sbjct 829 ACAGATTTGATTC-CATATCTCTTGAACACATTGGGAGACATGGAAGTAAGCGAGAGGAT 887
Query 1063 TCTCGCTATCTTGAGCAATTTAGTGGCAGTCCCTGAAGGAAGAAAAGCAATCGGT--T-T 1119
|||||| ||||| | |||| | || | |||||||||||| | ||||| || || | |
Sbjct 888 TCTCGCCATCTTAACCAATGTGGTATCCGTCCCTGAAGGACGGAAAGCGATAGGGGGTGT 947
Query 1120 GGTGTGC-GACGCATTCCCGGTTTTAGTCGATGTACTGAACTGGACTGACTCACCGGGGT 1178
||| || | ||| ||||| | || || ||||||||||| |||| ||| || |
Sbjct 948 GGT-TGAAG-CGC-TTCCCA-TATTGGTAGATGTACTGAATTGGAATGATTCGGTAAAAT 1003
Query 1179 GCCAAGA-AAAGGCGACTTACATTCTAATGTTGATGGCTCACAA-GGGATACGGAGATAG 1236
| ||||| |||| || |||||| || ||||| |||||||| || ||| || |||||| |
Sbjct 1004 GTCAAGAGAAAG-CGGTTTACATCCTTATGTTAATGGCTCATAAAGGG-TATGGAGATCG 1061
Query 1237 -ACAAGTGATGATTGAGGCGGGAATCGAATCAGCGTTGCTCGAGTTAACT-CTTTTAGGA 1294
| ||| ||||| || ||||| || ||||| | ||||| || ||| | ||| |||||
Sbjct 1062 GA-AAGCAATGATCGAAGCGGGTATTGAATCTTCATTGCTTGAACTAA-TACTTGTAGGA 1119
Query 1295 AGTGCACTGGCACAAAAGAGAGCATCAAGGATATTAGAGTGTCTT-AGA---GTAGACAA 1350
||| || |||| |||||| |||| |||||| || |||||||| || ||| || |||||
Sbjct 1120 AGTCCATTGGCGCAAAAGCGAGCCTCAAGGGTACTAGAGTGT-TTGAGAATTGTGGACAA 1178
Query 1351 AGGAAAGCAAGTC 1363
||| |||||||||
Sbjct 1179 AGGGAAGCAAGTC 1191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76751843675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5