BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G31900.1 Length=3609 Score E Sequences producing significant alignments: (Bits) Value Ahg328538 jgi|Araly1|328538|fgenesh1_pm.C_scaffold_7000765 4080 0.0 > Ahg328538 jgi|Araly1|328538|fgenesh1_pm.C_scaffold_7000765 Length=3666 Score = 4080 bits (2209), Expect = 0.0 Identities = 3174/3619 (88%), Gaps = 149/3619 (4%) Strand=Plus/Plus Query 97 GAAGAAACAGGCGGAAGT--A-ACCAGGATTGTCCTCTTGGCGAGATTGAA-AAGATTTT 152 ||||| |||| ||||||| | | ||| |||||||||||||||| ||||| | ||||| Sbjct 91 GAAGATACAGTCGGAAGTAAAGAAGAGGTTTGTCCTCTTGGCGAGGTTGAAGCA-ATTTT 149 Query 153 GGACCGTGAATGGCGTCCTACTGCATCTAACAATCCGAATTCTTCTGACAACGGGACACC 212 ||||||||||| | ||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 150 GGACCGTGAATTGTGTCCTACTGCATCTAACGATCCGGATTCTTCTGACAACGGGACACC 209 Query 213 AACCCTAGTTGTCGTGAAACAATATCTTGTGAAGTGGAAGGGGTTATCGTACTTGCACTG 272 ||||| |||| | ||||||||||||| |||||||||||||| ||||||| ||||||| Sbjct 210 AACCCAAGTTTTTGTGAAACAATATCAGGTGAAGTGGAAGGGAAAATCGTACCTGCACTG 269 Query 273 CTCTTGGGTGCCCGAGCAGGAGTTCGAGAAGGCTTACAAGTCCCATCCTCATTTAAAACT 332 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| | Sbjct 270 CTCTTGGGTGCCCGAGCAGGAATTCGAGAAGGCTTACAAGTCCCATCCTCGTTTAAAATT 329 Query 333 AAAATTAAGGGT-GACCAGGTTTAACGCTG-CTATGGACGTATTCATCGCTGAGAACGGA 390 ||||| |||||| || || |||||||||| | | |||| ||||||||||||||||||| Sbjct 330 AAAATCAAGGGTCGA-CAAATTTAACGCTGAC-AAGGACAAATTCATCGCTGAGAACGGA 387 Query 391 GCTCATGAGTTTATCGCCATTCGTCCTGAATGGAAAACTGTTGACCGGATTATTGCTTGC 450 | |||||| ||| |||||||||||||| |||| ||||||||||||||||||||||||| Sbjct 388 G---ATGAGTATATTGCCATTCGTCCTGAGTGGACAACTGTTGACCGGATTATTGCTTGC 444 Query 451 C-GGGAAGGAGATGATGGGGAGGAGTATCTGGTGAAGTACAAAGAACTTTCTTACAGAA- 508 | ||||| ||| |||| |||||||||| || |||||||||||||||||||| ||| Sbjct 445 CGGGGAA-GAGGTGATTTTAAGGAGTATCTAGTTAAGTACAAAGAACTTTCTTA-TGAAG 502 Query 509 ATAGTTACTGGGAATCTGAATCTGACATCTCAGATTTCCAGAATGAAATCCAAAGGTTTA 568 | |||||||||||||| |||||| ||||||| | |||||||| ||| | |||||||||| Sbjct 503 AAAGTTACTGGGAATCAGAATCTCTCATCTCAAAGTTCCAGAACGAAGTTCAAAGGTTTA 562 Query 569 AGGATATAAACTCTAGCTCTCGTAGAGATAAATATGTCGAAAATGAGAGAAATCGAGAGG 628 |||||||||||||| |||||||||||||||||||||||| | | ||||||||| | ||| Sbjct 563 AGGATATAAACTCTCGCTCTCGTAGAGATAAATATGTCGGATACAAGAGAAATCAAAAGG 622 Query 629 AATTCAAACAGTTTGATCTTACTCCTGAATTTCTTACAGGCACATTGCATACATACCAGC 688 |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 623 AATTCAAACAGTTTGAACATACTCCTGAATTTCTTACAGGCACATTGCATACATACCAGC 682 Query 689 TCGAAGGGCTGAATTTCCTAAGGTATTCATGGTCCAAGAAAACCAATGTAATCCTTGCGG 748 |||||||||||| |||| ||| | |||||||||||||| |||||||||||||||||||| Sbjct 683 TCGAAGGGCTGACTTTCTTAAAGCATTCATGGTCCAAGGGAACCAATGTAATCCTTGCGG 742 Query 749 ATGAAATGGGACTAGGCAAAACTATTCAGAGCATTGCCTTCTTGGCCTCTTTGTTCGAGG 808 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 743 ATGAAATGGGACTAGGCAAAACTATTCAGAGCATTGCCTTCTTGGCTTCTTTGTTCGAGG 802 Query 809 AAAACTTATCTCCTCATCTAGTTGTTGCTCCTCTCTCAACCATCCGTAACTGGGAGAGGG 868 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 803 AAAACTTATCTCCTCATCTAGTTGTTGCTCCTCTCTCAACCCTCCGTAACTGGGAGAGGG 862 Query 869 AATTTGCCACCTGGGCACCACATATGAATGTGGTTATGTACACTGGGGA-TTCGGAAGCA 927 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 863 AATTTGCCACCTGGGCACCACATATGAATGTGGTTATGTACACTGGG-ACTTCGGAAGCA 921 Query 928 CGTGATGTTATATGGGAACATGAGTTCTACTTCTCTGAAGGGCGTAAAAGTAAGTTTGAT 987 ||||||||||| ||||||||||||||||||||| || |||||||||||| |||||||||| Sbjct 922 CGTGATGTTATTTGGGAACATGAGTTCTACTTCCCTAAAGGGCGTAAAATTAAGTTTGAT 981 Query 988 GTCTTGCTCACGACGTATGAGATGGTTCACCCAGGGATATCAGTTCTGAGTCCAATCAAG 1047 ||| | |||||| | ||||||||| || ||| || | ||||||||||| ||||||||| Sbjct 982 GTCCTCCTCACGTCATATGAGATGATTAACCAAGACACATCAGTTCTGAAACCAATCAAG 1041 Query 1048 TGGACGTGCATGATTATTGATGAAGGCCATCGGTTGAAAAATCAGAAGTCAAAGCTGTAC 1107 ||||||||||||||| |||||||||||||||||||||||||| || | |||||||| ||| Sbjct 1042 TGGACGTGCATGATTGTTGATGAAGGCCATCGGTTGAAAAATAAGGATTCAAAGCTATAC 1101 Query 1108 TCTTCATTGAGTCAGTTTACAAGTAAGCATATCGTTCTGTTGACCGGAACACCACTTCAG 1167 |||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 1102 TCTTCATTGAATCAGTTTACGAGTAAGCATCGCGTTCTGTTGACCGGAACACCACTTCAG 1161 Query 1168 AACAACTTGAATGAACTTTTCGCTCTGATGCATTTTCTTGATGCGGACAAGTTTGGGAGT 1227 ||||||||| |||||||||||| ||| ||||||||||||||||| | |||||||| |||| Sbjct 1162 AACAACTTGGATGAACTTTTCGTTCTCATGCATTTTCTTGATGCCGTCAAGTTTGCGAGT 1221 Query 1228 TTGGAGAAGTTTCAA--G-A-TATAA--ATA-AAG--A-G-GA-GCAGATTTCAAGACTC 1275 ||||||| |||||| | | | ||| ||| || | | || |||||||||||||||| Sbjct 1222 ATGGAGAACTTTCAAAAGGAGTTTAAGGATATAAATCAAGAGAAGCAGATTTCAAGACTC 1281 Query 1276 CACCAAATGTTGGCTCCGCATCTGCTCAGAAGGTTAAAGAAAGACGTGCTCAAGGATAAG 1335 ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 1282 CACCAAATGTTGGCTCCACATCTGCTTAGAAGGTTAAAGAAAGACGTGCTCAAGGATAAG 1341 Query 1336 GTGCCCCCAAAGAAGGAGCTCATTTTGCGTGTTGATATGAGCAGCCAGCAAAAAGAAGTG 1395 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1342 ATGCCCCCAAAGAAGGAGCTCATTTTGCGTGTTGATCTGAGCAGCCAGCAAAAAGAAGTG 1401 Query 1396 TACAAAGCTGTTATTACCAATAATTATCAAGTCTTGACAAAGAAACGAGATGCTAAAATA 1455 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1402 TACAAAGCTGTTATTACCAATAATTATCAAGTCTTGACAAAGAAACGAGGTGCTAAAATA 1461 Query 1456 TCTAACGTGCTAATGAAAT-TACGCCAAGTTTGCTCTCATCCGTATCTGTTACCAGACTT 1514 ||||||||||||||| | | ||||| |||||||||||||||||||||||||| |||| | Sbjct 1462 TCTAACGTGCTAATGGA-TCTACGCAAAGTTTGCTCTCATCCGTATCTGTTAAAAGACGT 1520 Query 1515 TGAGCCAAGATTTGAAGACGCAAATGAAGCTTTTACAAAACTATTGGAAGCTTCCGGAAA 1574 |||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 1521 TGAGCCAAGACTTGAAGACGCAAATGAAGCTTTTACAAAACTCTTGGAAGCTTCTGGAAA 1580 Query 1575 GTTGCAACTGTTAGACAAAATGATGGTCAAACTCAAAGAGCAGGGGCACAGAGTGCTAAT 1634 ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1581 GTTGCAATTGTTAGACAAAATGATGGTCAAACTCAAAGAACAGGGGCACAGAGTGCTAAT 1640 Query 1635 CTATACCCAATTCCAACACACCCTTTACCTTTTGGAAGACTACTTCACTTTCAAGAATTG 1694 |||| | |||||||||||||| ||| ||||||| |||| |||| || |||||||| ||| Sbjct 1641 CTATTCACAATTCCAACACACGCTTGACCTTTTCCAAGATTACTGCAGTTTCAAGAGTTG 1700 Query 1695 GAATTATGAACGGATTGATGGAAAGATCAGTGGACCTGAGAGGCAAGTAAGAATAGATCG 1754 ||| ||||||||||||||||||||| || ||||| |||||||||||| ||| |||||||| Sbjct 1701 GAAATATGAACGGATTGATGGAAAGGTCGGTGGAGCTGAGAGGCAAGCAAGCATAGATCG 1760 Query 1755 GTTTAATGCAGAAAACTCGAACCGGTTCTGTTTTTTGCTCAGTACAAGAGCTGGTGGAAT 1814 ||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||| Sbjct 1761 GTTTAATGCAGAAAAGTCTAACCGGTTCTGTTTTTTGCTCACTACAAGAGCTGGTGGAAT 1820 Query 1815 AGGGATAAACCTTGCAACAGCTGATACAGTCATCATTTATGACAGTGATTGGAATCCTCA 1874 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1821 AGGAATAAACCTTGCAACAGCTGATACAGTCATCATTTATGACAGTGATTGGAATCCTCA 1880 Query 1875 TGCTGATCTCCAGGCTATGGCTAGAGTTCATCGGCTTGGCCAAACAAATAAGGTAATGAT 1934 |||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||| Sbjct 1881 TGCTGATCTCCAGGCTATGGCTAGAGCTCATCGTCTTGGCCAAACAAATAAGGTCATGAT 1940 Query 1935 CTACAGACTGATTCACAAAGGTACTGTAGAAGAACGGATGATGGAGATAACCAAGAACAA 1994 ||||| || |||||| || ||| || ||||| |||||| ||||||| || ||||| || Sbjct 1941 TTACAGGCTCATTCACCGAGCTACGGTGGAAGAGCGGATGGTGGAGATTACTAAGAAGAA 2000 Query 1995 GATGCTTCTAGAGCATCTCGTCGTGGG-AA-A---ACAAC--A--TCTTTGTCAGGACGA 2045 ||||||||||||||||||||| ||||| || | | ||| | |||| | ||||||| Sbjct 2001 GATGCTTCTAGAGCATCTCGTAGTGGGGAATATGGAAAACCCACATCTTCGGCAGGACGT 2060 Query 2046 GTTAGATGACATCATCAAATATGGTTCCAAGGAACTTTTCTCTGAAGAGAATGATGAAGC 2105 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2061 GTTAGATGACATCATCAAATATGGTTCCAAGGAGCTTTTCTCTGAAGAGAATGATGAAGC 2120 Query 2106 AGGGAGGTCTGGAAAAATCCATTACGATGATGCTGCTATCGAACAGTTGCTAGATCGTAA 2165 ||||| |||||||||||||||||| |||||||||||||| ||| ||||||| || ||| | Sbjct 2121 AGGGAAGTCTGGAAAAATCCATTATGATGATGCTGCTATTGAAAAGTTGCTTGACCGTGA 2180 Query 2166 TCATGTAGATGCTGTGGAGGTCTCACTGGATGATGAGGAGGA-AACTGATTTTTTAAAGA 2224 ||||||||||||| ||||||||||||||||||||||||||| || || ||||||||||| Sbjct 2181 TCATGTAGATGCTAAGGAGGTCTCACTGGATGATGAGGAGGATAA-TGGTTTTTTAAAGA 2239 Query 2225 ATTTCAAGGTGGCTAGTTTTGAGTATGTAGATGATGAAAATGAGGCTGCAGCATTAGAGG 2284 ||||||||||||| | |||| ||||| ||||||| || |||||||||||||| ||||| Sbjct 2240 ATTTCAAGGTGGCCACTTTTAAGTATATAGATGAC-AA--TGAGGCTGCAGCATCAGAGG 2296 Query 2285 AGGCACAAGCTATAGAAAACAATTCTTCAGTAAGAAATGCTGATAGAACAAGTCACTGGA 2344 ||||||||||||| |||||||||||||||| | | | |||||||||| |||| Sbjct 2297 AGGCACAAGCTATTGAAAACAATTCTTCAG-A-----T----A--GAACAAGTCATTGGA 2344 Query 2345 AAGATTTGCTGAAAGACAAATATGAAGTGCAACAAGCTGAGGAGCTCAGTGCTCTTGGAA 2404 |||| ||||| |||||||||||||||||||||||||| || ||||||| ||||||||||| Sbjct 2345 AAGAGTTGCTAAAAGACAAATATGAAGTGCAACAAGCCGAAGAGCTCAATGCTCTTGGAA 2404 Query 2405 AGAGGAAGAGAAACGGCAAGCAGGTGATGTATGCTGAAGA---TGATCTTGATGGTTTAG 2461 |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2405 AGAGGAAGCGAAACGGCAAGCAGGTGATGTATGCTGAAGAAGATGATCTTGATGGTTTAG 2464 Query 2462 AAGAAATCTCTGATGAGGAGGACGAATATTGTCTTGATGATTTAAAAGTGACCTCTGATG 2521 ||| | |||||||||| |||| ||| ||| ||||||||||||| |||||| |||||||| Sbjct 2465 AAGTGACCTCTGATGAGAAGGAGGAAGATTATCTTGATGATTTAGAAGTGATCTCTGATG 2524 Query 2522 AGGAGGAGGAAGCAGATGA-----A-CC--C-G-----AA-GCAGCTCGACAGAGAAAGC 2566 || |||||||||||||||| | || | | || ||||||||||||||||||| Sbjct 2525 AGAAGGAGGAAGCAGATGACGCCGAGCCAACTGTTGTTAAAGCAGCTCGACAGAGAAAGC 2584 Query 2567 CGAGGACGGTTACAAGGCCTTACAGAAAAAGGGCTCGCGATAATTCGGAGGAAATACCTT 2626 ||||||||||||||| |||||||||||||||| ||||||||| |||||| ||||| Sbjct 2585 CGAGGACGGTTACAAAGCCTTACAGAAAAAGGAATCGCGATAAATCGGAGT---TACCTG 2641 Query 2627 TGATGGAAGGCGAAGGGAGATATCTC-ATGGTGCTGGGATTTAACGAG-ACTGAGAGGGA 2684 |||||||||||| ||||| || | || | |||||| || |||||| || ||||| ||||| Sbjct 2642 TGATGGAAGGCGGAGGGAAATCTTTCGA-GGTGCTAGGTTTTAAC-AGGACTGAAAGGGA 2699 Query 2685 TATATTTTTACGTACGTTTAAGAGGTATGGAGCTGGAAACTTTGATTGGAAGGAGTTTGT 2744 | ||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 2700 AACCTTTTTACGTACGTTTAAGAGGTATGGAGCTGGAGACTTTGATTGGAAGGAGTTTAT 2759 Query 2745 TAATCCCTTATACATGAAGACCTATGACGAGATAAATAAGTATGGAATCTTATTTTTGAA 2804 | |||||||| | |||||||||| |||||||||||||||||||||||| || |||||| | Sbjct 2760 TCATCCCTTACATATGAAGACCTTTGACGAGATAAATAAGTATGGAATATTGTTTTTGCA 2819 Query 2805 ACACATTGCCGAAAACCCTACCGA-TAATTCTACAAATTTTAAAGTTATTACGGCAATGG 2863 |||||||||||||||| ||| || ||||||| ||| |||| ||||||| ||||||||| Sbjct 2820 ACACATTGCCGAAAACTCTAA-GAATAATTCTTCAACTTTTTCAGTTATTTCGGCAATGG 2878 Query 2864 TCTATGCAGATGGAGTTCCCAAAGAAGGGATAAGCAGTGACGAGCTACTAGTGAGCATGA 2923 ||| |||||||||| |||| |||||||||||||| ||||||||||||||| ||||||||| Sbjct 2879 TCTCTGCAGATGGAATTCCGAAAGAAGGGATAAGAAGTGACGAGCTACTAATGAGCATGA 2938 Query 2924 CTTTTATGATGCTAGTAAAGGAGAAGTGTCAATTTTTGGACAACCATCCGACAGCACCTG 2983 |||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||| | Sbjct 2939 CTTTTATGATGCTATTAAAGGAGAAGTGTCAATTTTTGGACGACCATCCGACAGAACCCG 2998 Query 2984 TTTTCTC-TAACTAC-GTCATCAGTAAGTACAATTTGAGAAATGGAGCATTTTCTAAGGA 3041 ||||| | | ||||| | |||||| |||||||||||||||| |||||||||||||||||| Sbjct 2999 TTTTC-CGTGACTACAG-CATCAGAAAGTACAATTTGAGAAGTGGAGCATTTTCTAAGGA 3056 Query 3042 AGAACATGATAGGATACTGATTCCTGCTGTTTCCAAGCATGGCTATGGTAGA-TGGGTGG 3100 |||||||||||||||| |||||||||||||| |||||||||| ||||| | | ||| || Sbjct 3057 AGAACATGATAGGATATTGATTCCTGCTGTTGCCAAGCATGGATATGGAA-ACTGGACGG 3115 Query 3101 CCATCGTTGAAGACGAAGAGATAGGGTTCCAAGAGGTTGCCTGCAAAGACCTGAATATCC 3160 || |||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 3116 CCGTCGTTGAAGACGAAGAGATAGGGTTCCAAGAGGTTGCCCGAAAAGACCTGAATATCC 3175 Query 3161 CTTTCCCT--C-CTGATACT-AAATCTGCTCGTAAAAGAATTTGTGACCATGTGGGAAAA 3216 |||||||| | | ||| || |||| | ||| || ||||||| ||||||||||||||||| Sbjct 3176 CTTTCCCTTACACAGATGCTGAAATTT-CTCTTATAAGAATTCGTGACCATGTGGGAAAA 3234 Query 3217 CGGGTTAAGAAGATGGAGGATGCCATAAAGTATGAGTACGCAGAAAA-GATACTTGCTGA 3275 ||| ||||||||||||||||||| || |||||||||||| ||||||| | ||| | || Sbjct 3235 CGGTTTAAGAAGATGGAGGATGCGATCAAGTATGAGTACACAGAAAATG-TACATAAGGA 3293 Query 3276 ACAAGCAAAAGCT-GAA-ACAA-A-G--GGA-ACA-----A--G--CTTTGTTGATGCAG 3319 ||||||| ||||| ||| | || | | ||| ||| | | ||||| | ||||| Sbjct 3294 ACAAGCAGAAGCTAGAAGA-AAGATGATGGATACAGCGGGACCGAGCTTTGCAGCTGCAG 3352 Query 3320 AAAAAGAAATGCTT-A--A---G---AA---TGATCCCATCACTTCaaaaaaaaaTTCTG 3367 | |||||||||||| | | | || ||||||||||| |||| || ||| ||||| Sbjct 3353 ACAAAGAAATGCTTGATGAACTGCCTAAGAATGATCCCATCATTTCAGAAGAAATTTCTG 3412 Query 3368 CAACTGCCGTTGACAACAAGCAAGGC-AGAGTTGAAATGGCTCAATCATACGATCAGAGT 3426 || ||||||| ||||||||||| | || |||||| |||||||| ||||| |||||||| Sbjct 3413 CAGCTGCCGTAAACAACAAGCAAA-CTAGGGTTGAAGTGGCTCAACCATACAATCAGAGT 3471 Query 3427 GTTAATGA-G--AAGTCAGGTGA-GTCATTCCAGACATATTTAGATATTCAACCGCTGAA 3482 |||||| | | || ||||| || | ||||| ||||||||||| | ||||||||||||| Sbjct 3472 GTTAATTATGGGAATTCAGG-GATGCCATTCGAGACATATTTAAACATTCAACCGCTGAC 3530 Query 3483 TCGAATGCCGAGGGAGAGCTTTA-AGCCTCTGGAACCTATCAATGAG-GAAATAAGC-AC 3539 |||||||| |||||||||||||| | |||||||||| ||||| ||| ||| |||| | Sbjct 3531 TCGAATGCTGAGGGAGAGCTTTATA-CCTCTGGAACGTATCAGTGAAAGAA-TAAGTGA- 3587 Query 3540 TAGG---C-T---A-A-GCGTTGGGACAGATCATGATGTAGAGATGGATGCAGCGGATAA 3590 | || | | | | ||| ||||||||||||||||| |||||||||||||||||||| Sbjct 3588 TGGGAGTCATTCCAGAAGCGCCGGGACAGATCATGATGTTGAGATGGATGCAGCGGATAA 3647 Query 3591 CATCATTGTGCTGGATTGA 3609 | | |||||| |||||||| Sbjct 3648 CGTTATTGTGTTGGATTGA 3666 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 136322226486 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5