BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31900.1
Length=3609
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328538 jgi|Araly1|328538|fgenesh1_pm.C_scaffold_7000765 4080 0.0
> Ahg328538 jgi|Araly1|328538|fgenesh1_pm.C_scaffold_7000765
Length=3666
Score = 4080 bits (2209), Expect = 0.0
Identities = 3174/3619 (88%), Gaps = 149/3619 (4%)
Strand=Plus/Plus
Query 97 GAAGAAACAGGCGGAAGT--A-ACCAGGATTGTCCTCTTGGCGAGATTGAA-AAGATTTT 152
||||| |||| ||||||| | | ||| |||||||||||||||| ||||| | |||||
Sbjct 91 GAAGATACAGTCGGAAGTAAAGAAGAGGTTTGTCCTCTTGGCGAGGTTGAAGCA-ATTTT 149
Query 153 GGACCGTGAATGGCGTCCTACTGCATCTAACAATCCGAATTCTTCTGACAACGGGACACC 212
||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 150 GGACCGTGAATTGTGTCCTACTGCATCTAACGATCCGGATTCTTCTGACAACGGGACACC 209
Query 213 AACCCTAGTTGTCGTGAAACAATATCTTGTGAAGTGGAAGGGGTTATCGTACTTGCACTG 272
||||| |||| | ||||||||||||| |||||||||||||| ||||||| |||||||
Sbjct 210 AACCCAAGTTTTTGTGAAACAATATCAGGTGAAGTGGAAGGGAAAATCGTACCTGCACTG 269
Query 273 CTCTTGGGTGCCCGAGCAGGAGTTCGAGAAGGCTTACAAGTCCCATCCTCATTTAAAACT 332
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
Sbjct 270 CTCTTGGGTGCCCGAGCAGGAATTCGAGAAGGCTTACAAGTCCCATCCTCGTTTAAAATT 329
Query 333 AAAATTAAGGGT-GACCAGGTTTAACGCTG-CTATGGACGTATTCATCGCTGAGAACGGA 390
||||| |||||| || || |||||||||| | | |||| |||||||||||||||||||
Sbjct 330 AAAATCAAGGGTCGA-CAAATTTAACGCTGAC-AAGGACAAATTCATCGCTGAGAACGGA 387
Query 391 GCTCATGAGTTTATCGCCATTCGTCCTGAATGGAAAACTGTTGACCGGATTATTGCTTGC 450
| |||||| ||| |||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 388 G---ATGAGTATATTGCCATTCGTCCTGAGTGGACAACTGTTGACCGGATTATTGCTTGC 444
Query 451 C-GGGAAGGAGATGATGGGGAGGAGTATCTGGTGAAGTACAAAGAACTTTCTTACAGAA- 508
| ||||| ||| |||| |||||||||| || |||||||||||||||||||| |||
Sbjct 445 CGGGGAA-GAGGTGATTTTAAGGAGTATCTAGTTAAGTACAAAGAACTTTCTTA-TGAAG 502
Query 509 ATAGTTACTGGGAATCTGAATCTGACATCTCAGATTTCCAGAATGAAATCCAAAGGTTTA 568
| |||||||||||||| |||||| ||||||| | |||||||| ||| | ||||||||||
Sbjct 503 AAAGTTACTGGGAATCAGAATCTCTCATCTCAAAGTTCCAGAACGAAGTTCAAAGGTTTA 562
Query 569 AGGATATAAACTCTAGCTCTCGTAGAGATAAATATGTCGAAAATGAGAGAAATCGAGAGG 628
|||||||||||||| |||||||||||||||||||||||| | | ||||||||| | |||
Sbjct 563 AGGATATAAACTCTCGCTCTCGTAGAGATAAATATGTCGGATACAAGAGAAATCAAAAGG 622
Query 629 AATTCAAACAGTTTGATCTTACTCCTGAATTTCTTACAGGCACATTGCATACATACCAGC 688
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 623 AATTCAAACAGTTTGAACATACTCCTGAATTTCTTACAGGCACATTGCATACATACCAGC 682
Query 689 TCGAAGGGCTGAATTTCCTAAGGTATTCATGGTCCAAGAAAACCAATGTAATCCTTGCGG 748
|||||||||||| |||| ||| | |||||||||||||| ||||||||||||||||||||
Sbjct 683 TCGAAGGGCTGACTTTCTTAAAGCATTCATGGTCCAAGGGAACCAATGTAATCCTTGCGG 742
Query 749 ATGAAATGGGACTAGGCAAAACTATTCAGAGCATTGCCTTCTTGGCCTCTTTGTTCGAGG 808
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 743 ATGAAATGGGACTAGGCAAAACTATTCAGAGCATTGCCTTCTTGGCTTCTTTGTTCGAGG 802
Query 809 AAAACTTATCTCCTCATCTAGTTGTTGCTCCTCTCTCAACCATCCGTAACTGGGAGAGGG 868
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 803 AAAACTTATCTCCTCATCTAGTTGTTGCTCCTCTCTCAACCCTCCGTAACTGGGAGAGGG 862
Query 869 AATTTGCCACCTGGGCACCACATATGAATGTGGTTATGTACACTGGGGA-TTCGGAAGCA 927
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 863 AATTTGCCACCTGGGCACCACATATGAATGTGGTTATGTACACTGGG-ACTTCGGAAGCA 921
Query 928 CGTGATGTTATATGGGAACATGAGTTCTACTTCTCTGAAGGGCGTAAAAGTAAGTTTGAT 987
||||||||||| ||||||||||||||||||||| || |||||||||||| ||||||||||
Sbjct 922 CGTGATGTTATTTGGGAACATGAGTTCTACTTCCCTAAAGGGCGTAAAATTAAGTTTGAT 981
Query 988 GTCTTGCTCACGACGTATGAGATGGTTCACCCAGGGATATCAGTTCTGAGTCCAATCAAG 1047
||| | |||||| | ||||||||| || ||| || | ||||||||||| |||||||||
Sbjct 982 GTCCTCCTCACGTCATATGAGATGATTAACCAAGACACATCAGTTCTGAAACCAATCAAG 1041
Query 1048 TGGACGTGCATGATTATTGATGAAGGCCATCGGTTGAAAAATCAGAAGTCAAAGCTGTAC 1107
||||||||||||||| |||||||||||||||||||||||||| || | |||||||| |||
Sbjct 1042 TGGACGTGCATGATTGTTGATGAAGGCCATCGGTTGAAAAATAAGGATTCAAAGCTATAC 1101
Query 1108 TCTTCATTGAGTCAGTTTACAAGTAAGCATATCGTTCTGTTGACCGGAACACCACTTCAG 1167
|||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1102 TCTTCATTGAATCAGTTTACGAGTAAGCATCGCGTTCTGTTGACCGGAACACCACTTCAG 1161
Query 1168 AACAACTTGAATGAACTTTTCGCTCTGATGCATTTTCTTGATGCGGACAAGTTTGGGAGT 1227
||||||||| |||||||||||| ||| ||||||||||||||||| | |||||||| ||||
Sbjct 1162 AACAACTTGGATGAACTTTTCGTTCTCATGCATTTTCTTGATGCCGTCAAGTTTGCGAGT 1221
Query 1228 TTGGAGAAGTTTCAA--G-A-TATAA--ATA-AAG--A-G-GA-GCAGATTTCAAGACTC 1275
||||||| |||||| | | | ||| ||| || | | || ||||||||||||||||
Sbjct 1222 ATGGAGAACTTTCAAAAGGAGTTTAAGGATATAAATCAAGAGAAGCAGATTTCAAGACTC 1281
Query 1276 CACCAAATGTTGGCTCCGCATCTGCTCAGAAGGTTAAAGAAAGACGTGCTCAAGGATAAG 1335
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1282 CACCAAATGTTGGCTCCACATCTGCTTAGAAGGTTAAAGAAAGACGTGCTCAAGGATAAG 1341
Query 1336 GTGCCCCCAAAGAAGGAGCTCATTTTGCGTGTTGATATGAGCAGCCAGCAAAAAGAAGTG 1395
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1342 ATGCCCCCAAAGAAGGAGCTCATTTTGCGTGTTGATCTGAGCAGCCAGCAAAAAGAAGTG 1401
Query 1396 TACAAAGCTGTTATTACCAATAATTATCAAGTCTTGACAAAGAAACGAGATGCTAAAATA 1455
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1402 TACAAAGCTGTTATTACCAATAATTATCAAGTCTTGACAAAGAAACGAGGTGCTAAAATA 1461
Query 1456 TCTAACGTGCTAATGAAAT-TACGCCAAGTTTGCTCTCATCCGTATCTGTTACCAGACTT 1514
||||||||||||||| | | ||||| |||||||||||||||||||||||||| |||| |
Sbjct 1462 TCTAACGTGCTAATGGA-TCTACGCAAAGTTTGCTCTCATCCGTATCTGTTAAAAGACGT 1520
Query 1515 TGAGCCAAGATTTGAAGACGCAAATGAAGCTTTTACAAAACTATTGGAAGCTTCCGGAAA 1574
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1521 TGAGCCAAGACTTGAAGACGCAAATGAAGCTTTTACAAAACTCTTGGAAGCTTCTGGAAA 1580
Query 1575 GTTGCAACTGTTAGACAAAATGATGGTCAAACTCAAAGAGCAGGGGCACAGAGTGCTAAT 1634
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1581 GTTGCAATTGTTAGACAAAATGATGGTCAAACTCAAAGAACAGGGGCACAGAGTGCTAAT 1640
Query 1635 CTATACCCAATTCCAACACACCCTTTACCTTTTGGAAGACTACTTCACTTTCAAGAATTG 1694
|||| | |||||||||||||| ||| ||||||| |||| |||| || |||||||| |||
Sbjct 1641 CTATTCACAATTCCAACACACGCTTGACCTTTTCCAAGATTACTGCAGTTTCAAGAGTTG 1700
Query 1695 GAATTATGAACGGATTGATGGAAAGATCAGTGGACCTGAGAGGCAAGTAAGAATAGATCG 1754
||| ||||||||||||||||||||| || ||||| |||||||||||| ||| ||||||||
Sbjct 1701 GAAATATGAACGGATTGATGGAAAGGTCGGTGGAGCTGAGAGGCAAGCAAGCATAGATCG 1760
Query 1755 GTTTAATGCAGAAAACTCGAACCGGTTCTGTTTTTTGCTCAGTACAAGAGCTGGTGGAAT 1814
||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1761 GTTTAATGCAGAAAAGTCTAACCGGTTCTGTTTTTTGCTCACTACAAGAGCTGGTGGAAT 1820
Query 1815 AGGGATAAACCTTGCAACAGCTGATACAGTCATCATTTATGACAGTGATTGGAATCCTCA 1874
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1821 AGGAATAAACCTTGCAACAGCTGATACAGTCATCATTTATGACAGTGATTGGAATCCTCA 1880
Query 1875 TGCTGATCTCCAGGCTATGGCTAGAGTTCATCGGCTTGGCCAAACAAATAAGGTAATGAT 1934
|||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||
Sbjct 1881 TGCTGATCTCCAGGCTATGGCTAGAGCTCATCGTCTTGGCCAAACAAATAAGGTCATGAT 1940
Query 1935 CTACAGACTGATTCACAAAGGTACTGTAGAAGAACGGATGATGGAGATAACCAAGAACAA 1994
||||| || |||||| || ||| || ||||| |||||| ||||||| || ||||| ||
Sbjct 1941 TTACAGGCTCATTCACCGAGCTACGGTGGAAGAGCGGATGGTGGAGATTACTAAGAAGAA 2000
Query 1995 GATGCTTCTAGAGCATCTCGTCGTGGG-AA-A---ACAAC--A--TCTTTGTCAGGACGA 2045
||||||||||||||||||||| ||||| || | | ||| | |||| | |||||||
Sbjct 2001 GATGCTTCTAGAGCATCTCGTAGTGGGGAATATGGAAAACCCACATCTTCGGCAGGACGT 2060
Query 2046 GTTAGATGACATCATCAAATATGGTTCCAAGGAACTTTTCTCTGAAGAGAATGATGAAGC 2105
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2061 GTTAGATGACATCATCAAATATGGTTCCAAGGAGCTTTTCTCTGAAGAGAATGATGAAGC 2120
Query 2106 AGGGAGGTCTGGAAAAATCCATTACGATGATGCTGCTATCGAACAGTTGCTAGATCGTAA 2165
||||| |||||||||||||||||| |||||||||||||| ||| ||||||| || ||| |
Sbjct 2121 AGGGAAGTCTGGAAAAATCCATTATGATGATGCTGCTATTGAAAAGTTGCTTGACCGTGA 2180
Query 2166 TCATGTAGATGCTGTGGAGGTCTCACTGGATGATGAGGAGGA-AACTGATTTTTTAAAGA 2224
||||||||||||| ||||||||||||||||||||||||||| || || |||||||||||
Sbjct 2181 TCATGTAGATGCTAAGGAGGTCTCACTGGATGATGAGGAGGATAA-TGGTTTTTTAAAGA 2239
Query 2225 ATTTCAAGGTGGCTAGTTTTGAGTATGTAGATGATGAAAATGAGGCTGCAGCATTAGAGG 2284
||||||||||||| | |||| ||||| ||||||| || |||||||||||||| |||||
Sbjct 2240 ATTTCAAGGTGGCCACTTTTAAGTATATAGATGAC-AA--TGAGGCTGCAGCATCAGAGG 2296
Query 2285 AGGCACAAGCTATAGAAAACAATTCTTCAGTAAGAAATGCTGATAGAACAAGTCACTGGA 2344
||||||||||||| |||||||||||||||| | | | |||||||||| ||||
Sbjct 2297 AGGCACAAGCTATTGAAAACAATTCTTCAG-A-----T----A--GAACAAGTCATTGGA 2344
Query 2345 AAGATTTGCTGAAAGACAAATATGAAGTGCAACAAGCTGAGGAGCTCAGTGCTCTTGGAA 2404
|||| ||||| |||||||||||||||||||||||||| || ||||||| |||||||||||
Sbjct 2345 AAGAGTTGCTAAAAGACAAATATGAAGTGCAACAAGCCGAAGAGCTCAATGCTCTTGGAA 2404
Query 2405 AGAGGAAGAGAAACGGCAAGCAGGTGATGTATGCTGAAGA---TGATCTTGATGGTTTAG 2461
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2405 AGAGGAAGCGAAACGGCAAGCAGGTGATGTATGCTGAAGAAGATGATCTTGATGGTTTAG 2464
Query 2462 AAGAAATCTCTGATGAGGAGGACGAATATTGTCTTGATGATTTAAAAGTGACCTCTGATG 2521
||| | |||||||||| |||| ||| ||| ||||||||||||| |||||| ||||||||
Sbjct 2465 AAGTGACCTCTGATGAGAAGGAGGAAGATTATCTTGATGATTTAGAAGTGATCTCTGATG 2524
Query 2522 AGGAGGAGGAAGCAGATGA-----A-CC--C-G-----AA-GCAGCTCGACAGAGAAAGC 2566
|| |||||||||||||||| | || | | || |||||||||||||||||||
Sbjct 2525 AGAAGGAGGAAGCAGATGACGCCGAGCCAACTGTTGTTAAAGCAGCTCGACAGAGAAAGC 2584
Query 2567 CGAGGACGGTTACAAGGCCTTACAGAAAAAGGGCTCGCGATAATTCGGAGGAAATACCTT 2626
||||||||||||||| |||||||||||||||| ||||||||| |||||| |||||
Sbjct 2585 CGAGGACGGTTACAAAGCCTTACAGAAAAAGGAATCGCGATAAATCGGAGT---TACCTG 2641
Query 2627 TGATGGAAGGCGAAGGGAGATATCTC-ATGGTGCTGGGATTTAACGAG-ACTGAGAGGGA 2684
|||||||||||| ||||| || | || | |||||| || |||||| || ||||| |||||
Sbjct 2642 TGATGGAAGGCGGAGGGAAATCTTTCGA-GGTGCTAGGTTTTAAC-AGGACTGAAAGGGA 2699
Query 2685 TATATTTTTACGTACGTTTAAGAGGTATGGAGCTGGAAACTTTGATTGGAAGGAGTTTGT 2744
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 2700 AACCTTTTTACGTACGTTTAAGAGGTATGGAGCTGGAGACTTTGATTGGAAGGAGTTTAT 2759
Query 2745 TAATCCCTTATACATGAAGACCTATGACGAGATAAATAAGTATGGAATCTTATTTTTGAA 2804
| |||||||| | |||||||||| |||||||||||||||||||||||| || |||||| |
Sbjct 2760 TCATCCCTTACATATGAAGACCTTTGACGAGATAAATAAGTATGGAATATTGTTTTTGCA 2819
Query 2805 ACACATTGCCGAAAACCCTACCGA-TAATTCTACAAATTTTAAAGTTATTACGGCAATGG 2863
|||||||||||||||| ||| || ||||||| ||| |||| ||||||| |||||||||
Sbjct 2820 ACACATTGCCGAAAACTCTAA-GAATAATTCTTCAACTTTTTCAGTTATTTCGGCAATGG 2878
Query 2864 TCTATGCAGATGGAGTTCCCAAAGAAGGGATAAGCAGTGACGAGCTACTAGTGAGCATGA 2923
||| |||||||||| |||| |||||||||||||| ||||||||||||||| |||||||||
Sbjct 2879 TCTCTGCAGATGGAATTCCGAAAGAAGGGATAAGAAGTGACGAGCTACTAATGAGCATGA 2938
Query 2924 CTTTTATGATGCTAGTAAAGGAGAAGTGTCAATTTTTGGACAACCATCCGACAGCACCTG 2983
|||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||| |
Sbjct 2939 CTTTTATGATGCTATTAAAGGAGAAGTGTCAATTTTTGGACGACCATCCGACAGAACCCG 2998
Query 2984 TTTTCTC-TAACTAC-GTCATCAGTAAGTACAATTTGAGAAATGGAGCATTTTCTAAGGA 3041
||||| | | ||||| | |||||| |||||||||||||||| ||||||||||||||||||
Sbjct 2999 TTTTC-CGTGACTACAG-CATCAGAAAGTACAATTTGAGAAGTGGAGCATTTTCTAAGGA 3056
Query 3042 AGAACATGATAGGATACTGATTCCTGCTGTTTCCAAGCATGGCTATGGTAGA-TGGGTGG 3100
|||||||||||||||| |||||||||||||| |||||||||| ||||| | | ||| ||
Sbjct 3057 AGAACATGATAGGATATTGATTCCTGCTGTTGCCAAGCATGGATATGGAA-ACTGGACGG 3115
Query 3101 CCATCGTTGAAGACGAAGAGATAGGGTTCCAAGAGGTTGCCTGCAAAGACCTGAATATCC 3160
|| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 3116 CCGTCGTTGAAGACGAAGAGATAGGGTTCCAAGAGGTTGCCCGAAAAGACCTGAATATCC 3175
Query 3161 CTTTCCCT--C-CTGATACT-AAATCTGCTCGTAAAAGAATTTGTGACCATGTGGGAAAA 3216
|||||||| | | ||| || |||| | ||| || ||||||| |||||||||||||||||
Sbjct 3176 CTTTCCCTTACACAGATGCTGAAATTT-CTCTTATAAGAATTCGTGACCATGTGGGAAAA 3234
Query 3217 CGGGTTAAGAAGATGGAGGATGCCATAAAGTATGAGTACGCAGAAAA-GATACTTGCTGA 3275
||| ||||||||||||||||||| || |||||||||||| ||||||| | ||| | ||
Sbjct 3235 CGGTTTAAGAAGATGGAGGATGCGATCAAGTATGAGTACACAGAAAATG-TACATAAGGA 3293
Query 3276 ACAAGCAAAAGCT-GAA-ACAA-A-G--GGA-ACA-----A--G--CTTTGTTGATGCAG 3319
||||||| ||||| ||| | || | | ||| ||| | | ||||| | |||||
Sbjct 3294 ACAAGCAGAAGCTAGAAGA-AAGATGATGGATACAGCGGGACCGAGCTTTGCAGCTGCAG 3352
Query 3320 AAAAAGAAATGCTT-A--A---G---AA---TGATCCCATCACTTCaaaaaaaaaTTCTG 3367
| |||||||||||| | | | || ||||||||||| |||| || ||| |||||
Sbjct 3353 ACAAAGAAATGCTTGATGAACTGCCTAAGAATGATCCCATCATTTCAGAAGAAATTTCTG 3412
Query 3368 CAACTGCCGTTGACAACAAGCAAGGC-AGAGTTGAAATGGCTCAATCATACGATCAGAGT 3426
|| ||||||| ||||||||||| | || |||||| |||||||| ||||| ||||||||
Sbjct 3413 CAGCTGCCGTAAACAACAAGCAAA-CTAGGGTTGAAGTGGCTCAACCATACAATCAGAGT 3471
Query 3427 GTTAATGA-G--AAGTCAGGTGA-GTCATTCCAGACATATTTAGATATTCAACCGCTGAA 3482
|||||| | | || ||||| || | ||||| ||||||||||| | |||||||||||||
Sbjct 3472 GTTAATTATGGGAATTCAGG-GATGCCATTCGAGACATATTTAAACATTCAACCGCTGAC 3530
Query 3483 TCGAATGCCGAGGGAGAGCTTTA-AGCCTCTGGAACCTATCAATGAG-GAAATAAGC-AC 3539
|||||||| |||||||||||||| | |||||||||| ||||| ||| ||| |||| |
Sbjct 3531 TCGAATGCTGAGGGAGAGCTTTATA-CCTCTGGAACGTATCAGTGAAAGAA-TAAGTGA- 3587
Query 3540 TAGG---C-T---A-A-GCGTTGGGACAGATCATGATGTAGAGATGGATGCAGCGGATAA 3590
| || | | | | ||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 3588 TGGGAGTCATTCCAGAAGCGCCGGGACAGATCATGATGTTGAGATGGATGCAGCGGATAA 3647
Query 3591 CATCATTGTGCTGGATTGA 3609
| | |||||| ||||||||
Sbjct 3648 CGTTATTGTGTTGGATTGA 3666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 136322226486
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5