BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31910.1
Length=1624
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944781 jgi|Araly1|944781|scaffold_701010.1 2211 0.0
> Ahg944781 jgi|Araly1|944781|scaffold_701010.1
Length=1427
Score = 2211 bits (1197), Expect = 0.0
Identities = 1356/1431 (95%), Gaps = 18/1431 (1%)
Strand=Plus/Plus
Query 25 CATTCAACTCTTATACA-ATATGCCCATGTTAATGGCGACACGTATCGATATAATCCAAA 83
||||||||||||||||| | |||| |||||||||||||||| ||||||||||||||||||
Sbjct 1 CATTCAACTCTTATACACACATGCACATGTTAATGGCGACAGGTATCGATATAATCCAAA 60
Query 84 AGCTTAATGTATATCCAAGGTTTCAAAACCATGACAAGAAGAAACTAATCACTCTCTCCA 143
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 AGCTTAATGTATATCCAAGGTTTCAAGACCATGACAAGAAGAAACTAATCACTCTCTCCA 120
Query 144 ATTTGGACCGTCAGTGTCCTTTACTCATGTACTCTGTCTTCTTCTACAAGAATACCACAA 203
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 ATTTGGACCGTCAATGTCCTTTACTCATGTACTCGGTCTTCTTCTACAAGAATACCACAA 180
Query 204 CTCGTGACTTTGACTCCGTCTTCTCCAACCTGAAGCTCGGGCTGGAGGAGACTATGTCTG 263
|||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||
Sbjct 181 CTCGTGACTTTGACTCCGTCTTCTCCGACCTGAAGCTCGGGCTGGAGGAGACTCTTTCTG 240
Query 264 TGTGGTATCCCGCGGCAGGGAGACTGGGTTTGGACGGAGGTGGCTGCAAGCTCAACATCC 323
|||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||
Sbjct 241 TGTGGTATCCCGCGGCAGGGAGGCTGGGCTTGGACGGAGTTGGCTGCAAGCTCAACATCC 300
Query 324 GGTGTAACGATGGTGGCGCAGTCATGGTGGAGGCGGTGGCGACAGGTGTCAAGTTGTCCG 383
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGTGTAATGATGGTGGCGCAGTCATGGTGGAGGCGGTGGCGACAGGTGTCAAGTTGTCCG 360
Query 384 AGCTTGGTGATTTGACTCAGTACAATGAGTTTTATGAGAATTTAGTTTACAAGCCTTCCT 443
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 361 AGCTTGGTGATTTGACTCAGTACAATGAGTTATATGAGAATTTGGTTTACAAGCCTTCCT 420
Query 444 TGGATGGTGATTTCTCTGTGATGCCTCTTGTTGTTGCTCAGGTGACAAGATTTGCATGTG 503
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTGATGGTGATTTCTCTGTAATGCCTCTTGTTGTTGCTCAGGTGACAAGATTTGCATGTG 480
Query 504 GAGGTTACTCAATTGGAATCGGTACAAGCCACTCTCTATTTGATGGAATCTCAGCTTACG 563
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 481 GAGGTTACTCAATTGGAATCGGTACAAGCCACTCACTATTTGATGGAATCTCAGCTTACG 540
Query 564 AATTCATTCACGCGTGGGCCTCCAACTCTCACATTCACAACAAATCCAACAGCAAGATTA 623
||||||||||||||||||| | ||||||||||||| ||||||||||||| |||||||||
Sbjct 541 AATTCATTCACGCGTGGGCTTTCAACTCTCACATTAACAACAAATCCAATGGCAAGATTA 600
Query 624 CTAATAAAAAGGA-AGATGTGGTCATCAAACCGGTTCATGATCGACGAAATCTACTGGTT 682
||||||||||||| | || |||||||||||||||||||||||||| |||||||||| |||
Sbjct 601 CTAATAAAAAGGATA-ATTTGGTCATCAAACCGGTTCATGATCGAGGAAATCTACT-GTT 658
Query 683 -AACCGGGATGCTGTCCGAGAAACCAATGCTGCAGCCATTTGTCATCTGTACCAGTTGAT 741
|||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 659 GAACCGGGACGCTATCCGAGTAACCAATGCTGCAGCCATTTGTCATCTGTACCAGTTGAT 718
Query 742 CAAACAGGCGATGATGACCT-ATCAGGAGCAAAACCGTAACTTAGAGTTACCAGACTCTG 800
||||||||||||||||| || ||||||||||||||||||| || ||||||||||||||||
Sbjct 719 CAAACAGGCGATGATGA-CTCATCAGGAGCAAAACCGTAAATTTGAGTTACCAGACTCTG 777
Query 801 GTTTTGTGATCAAAACGTTCGAGCTTAATGGCGATGCGATAGAAAGCATGAAGAAGAAAT 860
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 778 GTTTTGTGATCAAAACGTTCGAGCTTAATGGCGAAGCGATAGAAAGCATGAAGAAGAAAT 837
Query 861 CACTAGAAGGGTTCATGTGCTCCTCCTTTGAGTTTCTTGCTGCTCATTTGTGGAAGGCAA 920
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CACTAGAAGGGTTCTTGTGCTCCTCCTTTGAGTTTCTTGCTGCTCATTTGTGGAAGGCAA 897
Query 921 GAACAAGGGCTTTAGGGTTGAGGAGAGACGCCATGGTGTGTTTACAATTCGCAGTGGACA 980
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 898 GAACAAGGGCTTTAGGGTTGAGGAGAGACGCCATGGTGTGTCTACAATTCGCGGTGGACA 957
Query 981 TAAGGAAAAGAACGGAGACA-CCGCTGCCAGAAGGGTTTTCCGGCAACGCATACGTGCTT 1039
||||||| || |||||| | |||||||||||||| |||||||||||||| || ||||||
Sbjct 958 TAAGGAAGAGGACGGAG-CGGCCGCTGCCAGAAGGATTTTCCGGCAACGCCTATGTGCTT 1016
Query 1040 GCCTCGGTGGCATCCACCGCCAGAGAATTACTTGAAGAGCTAACACTCGAGTCAATAGTC 1099
|||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1017 GCCTCGGTGGCATCCACCACCAGAGAATTACTCGAAGAACTAACACTCGAGTCAATAGTC 1076
Query 1100 AACAAGATCAGAGAAGCCAAGAAATCAATTGACCAAGGTTACATAAACTCTTACATGGAA 1159
|||||||| |||||||||||||| ||||||||||||| |||||| |||||||||||||||
Sbjct 1077 AACAAGATTAGAGAAGCCAAGAAGTCAATTGACCAAGATTACATCAACTCTTACATGGAA 1136
Query 1160 GCACTCGGAGGT----A-----GTAATGACGGAAATCTCCCTCCTCTCAAAGAGCTAACC 1210
|||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GCACTCGGAGGTGGTGATCAAAGTAATGACGGAAATCTCCCTCCTCTCAAAGAGCTAACC 1196
Query 1211 CTAATCTCCGACTGGACAAAAATGCCATTTCACAATGTTGGCTTTGGCAACGGCGGCGAG 1270
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1197 CTAATCTCCGACTGGACAAAAATGCCATTTCACAATGTTGGCTTTGGCAACGGCGGGGAG 1256
Query 1271 CCAGCGGATTACATGGCCCCACTGTGTCCACCGGTGCCACAAGTTGCTTATTTCATGAAG 1330
|||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1257 CCAGCGGATTACGTGGCACCACTGTGTCCACCTGTGCCACAAGTTGCTTATTTCATGAAG 1316
Query 1331 AACCCTAAAGATGCCAAAGGTGTTCTTGTGAGGATTGGCTTGGACCCACGAGATGTTAAT 1390
|||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1317 AACCCTAAAGATGCTAAAGGTGTTCTTGTGAGGATTGGTTTGGACCCAAGAGATGTTAAT 1376
Query 1391 GGCTTTTCAAATCATTTCCTTGATTGCTAATATATTAGCTGGTGATAATTA 1441
| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GATTTTTCAGATCATTTCCTTGATTGCTAATATATTAGCTGGTGATAATTA 1427
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60868211510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5