BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31920.1
Length=2025
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888921 jgi|Araly1|888921|Al_scaffold_0007_907 2311 0.0
Ahg481375 jgi|Araly1|481375|fgenesh2_kg.4__435__AT2G25180.1 424 2e-117
Ahg926035 jgi|Araly1|926035|scaffold_201596.1 76.8 6e-13
> Ahg888921 jgi|Araly1|888921|Al_scaffold_0007_907
Length=1653
Score = 2311 bits (1251), Expect = 0.0
Identities = 1537/1672 (92%), Gaps = 32/1672 (2%)
Strand=Plus/Plus
Query 194 ATGACTATGGAGCAAGAAATTGAAGTCTTGGACCAGTTTCCGGTTGGGATGAGAGTTCTT 253
|||||| |||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1 ATGACTTTGGAACAAGAAATTGAAGTCTTGGACCAGTTTCCTGTGGGGATGAGAGTTCTT 60
Query 254 GCTGTTGACGATGACCAGACTTGTCTCCGTATTCTCCAGACTTTGCTTCAGCGCTGCCAA 313
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 61 GCTGTTGACGATGACCAGACTTGTCTCCGAATTCTCCAGACTTTGCTTCATCGCTGCCAA 120
Query 314 TATCACGTTACAACAACGAATCAGGCACAGACCGCATTGGAGTTGTTGAGGGAGAACAAG 373
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 TATCACGTTACAACAACGAACCAGGCACAGACCGCATTGGAGTTGTTGAGGGAGAACAAG 180
Query 374 AATAAGTTTGATCTTGTTATTAGCGATGTCGACATGCCAGACATGGATGGTTTCAAGCTG 433
|| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 AACAAATTTGATCTTGTTATTAGCGATGTTGACATGCCAGACATGGATGGTTTCAAGCTG 240
Query 434 CTTGAGCTTGTTGGTCTTGAAATGGACTTACCTGTCATAATGTTATCTGCGCATAGCGAT 493
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 CTTGAGCTTGTTGGTCTTGAAATGGACTTACCTGTCATAATGTTATCTGCGCACAGCGAT 300
Query 494 CCAAAGTATGTGATGAAAGGAGTCAAGCACGGTGCCTGTGATTATCTGCTTAAACCGGTT 553
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 301 CCAAAGTATGTGATGAAAGGAGTCAAGCACGGTGCCTGCGACTATCTGCTTAAGCCGGTT 360
Query 554 CGAATTGAGGAGCTTAAGAACATATGGCAACATGTTGTGAGAAAGAGCAAACTTAAGAAG 613
|||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 361 CGAATTGAGGAGCTCAAGAACATATGGCAACACGTGGTGAGAAAGAGCAAACTTAAGAAG 420
Query 614 AATAAGAGCAATGTGAGTAATGGTTCAGG-AAACTGTGATAAAGCAAACAGAAAACGTAA 672
|| ||||||| ||||||||||| | | || ||| | ||||||||||||||||||||||||
Sbjct 421 AACAAGAGCAGTGTGAGTAATGCTGC-GGCAAATTCTGATAAAGCAAACAGAAAACGTAA 479
Query 673 AGAACAGTATGAAGAGGAGGAAGAGGAAGAAAGAGGGAATGATAATGATGATCCAACGGC 732
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 480 AGAACAGTATGAAGAGGAGGAAGAGGAAGAAAGAGGGAATGAAAACGATGATCCAACGGC 539
Query 733 GCAGAAGAAGCCTCGTGTTCTTTGGACGCATGAGCTGCACAATAAATTCCTAGCAGCTGT 792
|| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 ACAAAAGAAACCTCGTGTTCTTTGGACGCATGAGCTGCACAACAAATTCCTAGCAGCTGT 599
Query 793 TGATCATTTAGGCGTTGAGAGAGCTGTTCCAAAAAAGATTCTAGATCTGATGAATGTTGA 852
||||||||| || ||||||| |||||| |||||||||||||| |||||||||||||||||
Sbjct 600 TGATCATTTGGGAGTTGAGAAAGCTGTACCAAAAAAGATTCTTGATCTGATGAATGTTGA 659
Query 853 CAAACTCACTAGAGAGAATGTTGCAAGCCACCTTCAGAAATTCCGCGTTGCTCTGAAGAA 912
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 660 CAAACTCACTAGAGAAAATGTTGCAAGCCACCTTCAGAAATTCCGCGTTGCTTTGAAAAA 719
Query 913 GGTGTCTGATGACGCCATTCAACAAGCTAACAGGGCGGCTATTGACTCACATTTTATGCA 972
| |||||||| | |||| ||||||||||| ||||||||| |||| |||||||| |||||
Sbjct 720 GATGTCTGATAAAGCCAATCAACAAGCTACCAGGGCGGCGCTTGAGTCACATTTGATGCA 779
Query 973 AATGAATTCTCAGAAAGGACTTGGTGGCTTCTACCACCACCACCGCGGAATACCTGTTGG 1032
||||| |||||| ||||||||||| |||||||||||||||| | ||||||||||||||
Sbjct 780 AATGAGTTCTCACAAAGGACTTGGCGGCTTCTACCACCACC---GTGGAATACCTGTTGG 836
Query 1033 ATCCGGTCAGTTCCATGGTGGAACCACAATGATGAGGCATTACTCTTCAAATAGGAATCT 1092
| ||||||| || |||||||| ||||||||||||| |||||| ||||||||||||||||
Sbjct 837 AACCGGTCATTTTCATGGTGGGGCCACAATGATGAGACATTACCCTTCAAATAGGAATCT 896
Query 1093 TGGTCGTCTGAATTCCCTTGGAGCAGGAATGTTCCAACCAGTCTCATCATCGTTTCCTCG 1152
|||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 897 TGGTCGTCCAAATTCCCTTGCAGGAGGAATGTTCCAACCAGTCTCATCATCGTTTCCTCG 956
Query 1153 TAACCATAATGATGGAGGAAACATACTTCAGGGTTTGCC------GC---TAGAAGAGCT 1203
|||||| |||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 957 TAACCACAATGATGGAGGAAACATACTTCAGGGATTGCCACTTCCGCCACTAGAAGAGCT 1016
Query 1204 TCAGATCAACAACAACATCAACAGGGCTTTTCCAAGCTTTACTTCACAACAAAACTCTCC 1263
||||||||||||||||||||||| ||| |||||||||||||| ||||||||||| || ||
Sbjct 1017 TCAGATCAACAACAACATCAACAAGGCCTTTCCAAGCTTTACCTCACAACAAAATTC-CC 1075
Query 1264 -AATGGTAGCTCCCAGTAATCTGTTACTTCTCGAGGGTAACCCGCAGTCATCATCTTTAC 1322
|||||| ||||||| |||||| ||||||||||||||| |||||||||||||||| |
Sbjct 1076 TAATGGTTGCTCCCAATAATCTCTTACTTCTCGAGGGTCACCCGCAGTCATCATCG---C 1132
Query 1323 CCTCAAACCCGGGTTTTTCTCCTCA-TTTCGAGATCAGCAAGCGTCTAGAACATTGGTCA 1381
| ||| ||||||||||| ||| ||||| | |||||||| |||||||||||||
Sbjct 1133 C---------GGGATTTTCTCCTCACTTT-GAGATGAACAAGCGTCAAGAACATTGGTCA 1182
Query 1382 AACGCTGCATTGTCAACCAACATTCCACAGAGTGATGTTCATTCAAAACCTGACACCTTG 1441
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1183 AACACTGCATTTTCAACCAACATTCCACAGAGTGATGTTCATTCAAAACCTGACAACTTG 1242
Query 1442 GAATGGAATGCGTTCTGCGACTCAGCTAGTCCGCTAGTAAACCCAAACCTGGATACAAAT 1501
|||||||||||||||||||||||||| |||||| || |||||| ||||||||||||| ||
Sbjct 1243 GAATGGAATGCGTTCTGCGACTCAGCCAGTCCGATAATAAACCAAAACCTGGATACAGAT 1302
Query 1502 CCGGCATCTCTCTGCAGAAACACGGGTTTTGGATCCACAAATGCTGCACAAACAGACTTC 1561
|| ||||| ||||||||||||||| ||| ||||||||| |||||||||||||||||||
Sbjct 1303 ACGACATCTTTCTGCAGAAACACGGATTTCAGATCCACAAGTGCTGCACAAACAGACTTC 1362
Query 1562 TTTTATCCATTACAGATGAATCAGCAGCCTGCAAACAACTCAGGTCCAGTGACAGAAGCT 1621
||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1363 TTTTATCCACTACAGATGAATCAGCAGCCTACAAACAACTCAGGTCCAATGACAGAAGCT 1422
Query 1622 CAACTGTTTAGAAGTAGCAATCCAAACGAAGGTTTACTCATGGGACAACAGAAGCTTCAG 1681
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1423 CAATTGTTTAGAAGTAGCAATCCAAACGAAGGTTTACTCATGGGACAACAGAAGCTACAG 1482
Query 1682 AGTGGTTTGATGGCTTCTGATGCTGGTTCCTTAGATGATATAGTCAATTCCTTAATGACA 1741
|||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1483 AGTGGTTTCATGGCTTCTGATGCTGGTTCCTTAGATGATATAGTCAACTCTTTAATGACA 1542
Query 1742 CAGGAACAGAGCCAATCTGATTTCTCGGAAGGTGATTGGGATTTGGATGGTTTAGCTCAC 1801
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1543 CAGGAACAGAACCAATCTGATTTCTCAGAAGGTGATTGGGATTTGGATGGTTTAGCTCAC 1602
Query 1802 TCGGAACATGCATACGAGAAACTCC-ATTTTCCCTTTTCTTTGTCAGCTTGA 1852
|| ||||||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct 1603 TCTGAACATGCATATGAGAAAC-CCTATTTTCCCTTTTCTTTGTCAGCTTGA 1653
> Ahg481375 jgi|Araly1|481375|fgenesh2_kg.4__435__AT2G25180.1
Length=1992
Score = 424 bits (229), Expect = 2e-117
Identities = 350/408 (86%), Gaps = 10/408 (2%)
Strand=Plus/Plus
Query 194 ATGACTATGGAGCAAGAA-ATTGAAGTC-TTGGACCAGTTTCCGGTTGGGATGAGAGTTC 251
|||||| |||| ||| || |||||| | ||||| |||||||| || || ||||||||||
Sbjct 1 ATGACTGTGGAACAA-AATTTTGAAG-CTTTGGATCAGTTTCCTGTAGGAATGAGAGTTC 58
Query 252 TTGCTGTTGACGATGACCAGACTTGTCTCCGTATTCTCCAGACT-TTGCTTCAG-CGCTG 309
|||||||||| |||||||| ||||||||| || || | ||| || |||| | | |||
Sbjct 59 TTGCTGTTGATGATGACCAAACTTGTCTCAAAATCCTTGAAACTCTT-CTTC-GTCTCTG 116
Query 310 CCAATATCACGTTACAACAACGAATCAGGCACAGACCGCATTGGAGTTGTTGAGGGAGAA 369
|||||| || |||||||| ||||| || ||||| | || || ||||| ||||| |||||
Sbjct 117 CCAATACCATGTTACAACGACGAACCAAGCACAAAAGGCTTTAGAGTTATTGAGAGAGAA 176
Query 370 CAAGAATAAGTTTGATCTTGTTATTAGCGATGTCGACATGCCAGACATGGATGGTTTCAA 429
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 177 CAAGAACAAGTTTGATCTTGTTATTAGCGATGTCGACATGCCTGACATGGATGGTTTCAA 236
Query 430 GCTGCTTGAGCTTGTTGGTCTTGAAATGGACTTACCTGTCATAATGTTATCTGCGCATAG 489
|| ||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||
Sbjct 237 ACTTCTTGAGCTTGTTGGTCTTGAAATGGACCTACCTGTCATAATGTTGTCTGCTCATAG 296
Query 490 CGATCCAAAGTATGTGATGAAAGGAGTCAAGCACGGTGCCTGTGATTATCTGCTTAAA-C 548
|||||||||||||||||||||||||| | || ||||| ||||| ||| || || || |
Sbjct 297 TGATCCAAAGTATGTGATGAAAGGAGTTACCCATGGTGCTTGTGACTATTTG-TTGAAGC 355
Query 549 CGGTTCGAATTGAGGAGCTTAAGAACATATGGCAACATGTTGTGAGAA 596
||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 356 CGGTTCGTATTGAGGAGCTGAAGAACATATGGCAACATGTGGTGAGAA 403
> Ahg926035 jgi|Araly1|926035|scaffold_201596.1
Length=1633
Score = 76.8 bits (41), Expect = 6e-13
Identities = 69/82 (84%), Gaps = 4/82 (5%)
Strand=Plus/Plus
Query 814 AGCTGTTCCAAAAAAGAT-TCTAGATCTGATGAATGTTGACA-AACTCACTAGAGAGAAT 871
||||| ||| || ||||| | | || || ||||||||| || |||||||||||||||
Sbjct 675 AGCTGGTCCCAAGAAGATAT-TGGACCTCATGAATGTT-CCATGGCTCACTAGAGAGAAT 732
Query 872 GTTGCAAGCCACCTTCAGAAAT 893
||||||||||||||||||||||
Sbjct 733 GTTGCAAGCCACCTTCAGAAAT 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76142399755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5