BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31930.1
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944778 jgi|Araly1|944778|scaffold_701007.1 1144 0.0
> Ahg944778 jgi|Araly1|944778|scaffold_701007.1
Length=750
Score = 1144 bits (619), Expect = 0.0
Identities = 703/744 (94%), Gaps = 3/744 (0%)
Strand=Plus/Plus
Query 10 CCCTAAACGTCGGCGACGAACATCGATGGCTCTTCTGCTCCGTACTCTTCAAAAATCACG 69
|||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1 CCCT-AACGTCGGCGACGAACCTCCATGGCTCTTCTGCTCCGTACTCTTCAAAAATCACA 59
Query 70 CATTTCTCCTTCTCATTCCTCAAGAACCCTAATTTCTTGGGTTCGATGCAAATCTCTCTT 129
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 60 CATTTCTCCTTCTCATTCCTCAAGAACCCTAATTTCCTGGGTTCGATGTAAATCTCTGTT 119
Query 130 GCCAAATCACCAATCACGAGACGTCACCACATCG-CCAGCTAAATCACCCTTCCGGTCCA 188
||||||| ||||||||||||| ||||||| ||| || ||||||||||| |||| |||||
Sbjct 120 ACCAAATCCCCAATCACGAGACATCACCACCTCGACC-GCTAAATCACCATTCCAGTCCA 178
Query 189 ACATTCTTCGAATCATAAGAAACGAGATCGAGTATCAATCCGATTATGCTCCTCCGCATC 248
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 ACATCCTTCGAATCATAAGAAACGAGATCGAGTATCAATCCGATTATGCTCCTCCGCATC 238
Query 249 AGCCAGCGACTGAATTCAAATCGTTCTCTGTGGAGGATTGTCCCGGTGAGCAATGCATTG 308
|||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 239 AGCCAGCGACTGAATTTAAATCGTTCTCTGTCGAGGATTGTCCCGGTGAACAATGCATTG 298
Query 309 TGATGAAAGGGAAGTTTGGAGAAGATGAGGATATCAAAATGGAAGCAACTATGTTTGATG 368
||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 299 TGATGAAAGGGAAGTGCGGAGAAGATGAGAATATCAAAATGGAAGCAACCATGTTTGATG 358
Query 369 GGTTTATGAATGTTCCAAGAGCCGGTTTAGATGCTTCAGGGCACGATGTCCGTCTTCATA 428
||||||||| |||||||||| | ||||||||||||||||||| ||||||||||||||| |
Sbjct 359 GGTTTATGACTGTTCCAAGAACTGGTTTAGATGCTTCAGGGCGCGATGTCCGTCTTCACA 418
Query 429 TTAGCTTGCTTGTTGACATTTCCAAGGTTGATGGAAGTGAAGAGATCGAGTTCCTTTGCT 488
||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 419 TTAGCTTGCTTGTCGACATTTCTAAGGTTGATGGAAGTGAAGAGTTCGAGTTCCTTTGCT 478
Query 489 CCGTCTGGCCTAACCGTATTGAAATTCGAAAGCTTTACAAGCTTAGACGCAACAAAATCA 548
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 479 CCGTCTGGCCTAACCGTATTGAAATTCAAAAGCTTTACAAGCTTAGACGCAACAAATTCA 538
Query 549 CTGGTCAGCCTTACATGGGACCTAATTTTGGGAATTTGAAGTATGATTTTCAGACAGCGA 608
| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 539 CGGGTCAGCCTTACATGGGACCAAATTTCGGGAATTTGAAGTATGATTTTCAGACAGCGA 598
Query 609 TTCGGGAGTTTTTACGAGTAAGAGGAATCGACGCAGAGCTTTGTTTTTTCTTGCATGAAT 668
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 599 TCCGGGAGTTTTTACGAGTAAGAGGAATCGACTCAGAGCTTTGTTTTTTCTTGCATGAAT 658
Query 669 ATATGATGAATAAGGATAGGATTGAGCTCATTCAATGGTTGAGAAAGCTAAATTCATTCA 728
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 659 ATATGATGAATAAGGATAGGATTGAACTCATTCAATGGTTGAGAAAGCTAAATTCATTCA 718
Query 729 TCTCACAATAAACACGAAATATTT 752
|| ||||||||||||||||| |||
Sbjct 719 TCGCACAATAAACACGAAATTTTT 742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30269596098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5