BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31940.1
Length=1821
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944777 jgi|Araly1|944777|scaffold_701006.1 2518 0.0
Ahg491541 jgi|Araly1|491541|fgenesh2_kg.7__974__AT4G31950.1 2379 0.0
> Ahg944777 jgi|Araly1|944777|scaffold_701006.1
Length=1616
Score = 2518 bits (1363), Expect = 0.0
Identities = 1531/1614 (95%), Gaps = 4/1614 (0%)
Strand=Plus/Plus
Query 36 TGCACTCTCAAAACACTATGGATACTTCCCTCTTTTCTTTGTTTGTTCCAATCCTTGTTT 95
|||||| ||||||||||||| |||||||| |||||||||| |||||||| ||||| |||
Sbjct 4 TGCACTTTCAAAACACTATGAATACTTCCTTCTTTTCTTTATTTGTTCCGATCCTACTTT 63
Query 96 TCGTTTTTATCGCTCTTTTCAAGAAATCAAAGAAACCAAAATATGTAAAAGCTCCTGCAC 155
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 64 TCGTTTTTATCGCTCTTTTTAAGAAATCAAAGAAACCAAACCATGTAAAAGCTCCTGCAC 123
Query 156 CAAGTGGTGCATGGCCCATCATCGGCCATCTTCACCTTCTCGGTGGCAAGGAACAGCTTC 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 124 CAAGTGGTGCATGGCCCATCATCGGCCATCTTCACCTTCTCGGTGGCAAGGAACACCTTC 183
Query 216 TCTACCGAACCTTAGGAAAAATGGCTGACCACTACGGTCCAGCCATGTCGCTACAACTTG 275
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 184 TCTACCGAACCTTAGGAAAAATGGCTGACCACTATGGTCCAGCCATGTCGCTACGACTTG 243
Query 276 GGAGCAATGAAGCATTTGTTGTGAGCAGTTTTGAGGTGGCTAAAGATTGTTTTACTGTGA 335
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 244 GGAGCAGTGAAGCATTTGTGGTGAGCAGTTTTGAGGTGGCTAAAGATTGTTTTACTGTGA 303
Query 336 ACGACAAGGCCTTGGCTTCACGTCCTATGACTGCAGCTGCAAAGCACATGGGTTACAATT 395
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 304 ACGACAAAGCCTTGGCTTCACGTCCTATGACTGCAGCCGCAAAGCACATGGGTTACAATT 363
Query 396 TTGCTGTTTTCGGGTTTGCCCCTTATAGCGCTTTCTGGCGTGAGATGCGTAAAATCGCAA 455
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 364 TTGCTGTTTTCGGGTTTGCGCCTTATAGCGCTTTCTGGCGTGAGATGCGTAAAATCGCAA 423
Query 456 CCATCGAGCTTCTTTCTAACCGGCGGCTTCAGATGCTCAAGCACGTTCGTGTTTCTGAGA 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 CCATCGAGCTTCTTTCTAACCGGCGGCTTCAGATGCTCAAGCACGTTCGTGTTTCTGAGA 483
Query 516 TCACAATGGGTGTGAAAGATTTGTATTCCTTGTGGTTCAAGAATGGCGGTACAAAACCAG 575
|| |||||||||||||||||||||||||||||||| ||||||| || |||||| ||||||
Sbjct 484 TCTCAATGGGTGTGAAAGATTTGTATTCCTTGTGGGTCAAGAAAGGTGGTACAGAACCAG 543
Query 576 TAATGGTTGATCTAAAGAGCTGGTTAGAGGACATGACTCTGAACATGATCGTGAGAATGG 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 TAATGGTTGATCTAAAGAGCTGGTTAGAGGACATGACTCTGAACATGATCGTGAGAATGG 603
Query 636 TGGCAGGAAAACGATACTTTGGAGGCGGAGGCTCAGTATCGTCGGAGGATACTGAAGAGG 695
|||| |||||||||||||||||||| || |||||| ||| |||||||||||||||||||
Sbjct 604 TGGCCGGAAAACGATACTTTGGAGGTGGTGGCTCACAATCCTCGGAGGATACTGAAGAGG 663
Query 696 CAATGCAATGCAAAAAGGCCATCGCAAAGTTCTTTCACCTCATCGGTATATTCACTGTGT 755
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 664 CAATGCAATGCAAAAAGGCCATCGCAAAGTTCTTTCATCTCATCGGTATATTCACTGTGT 723
Query 756 CAGATGCTTTTCCGACACTAAGtttttttGATTTGCAAGGACATGAGAAGGAGATGAAGC 815
| ||||||||||||| |||| | | ||||||||||||||||||||||||||||||||||
Sbjct 724 CCGATGCTTTTCCGAGACTAGGGTGGTTTGATTTGCAAGGACATGAGAAGGAGATGAAGC 783
Query 816 AAACGGGAAGCGAATTAGATGTGATCCTTGAAAGATGGATTGAAAACCATCGACAACAAC 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 AAACGGGAAGCGAATTAGATGTGATCCTTGAAAGATGGATTGAAAACCATCGACAACAAC 843
Query 876 GCAAATTTTCAGGAACGAAAGAGAATGATTCAGACTTCATCGACGTTATGATGTCGCTTG 935
|| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 844 GCCAAGTTTCAGGAACGAAAGAGAATGATTCAGACTTCATCGACGTTATGTTGTCGCTTG 903
Query 936 CGGAACAAGGAAAACTCTCGCATCTCCAGTATGATGCAAATACTAGCATCAAATCTACCT 995
| |||||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 904 CAGAACAAGGCAAACTCTCGCATCTTCAATATGATGCAAATACTAGCATCAAATCTACCT 963
Query 996 GCCTGGCACTGATTCTTGGAGGAAGTGACACTTCAGCATCAACCCTTACATGGGCCATTT 1055
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 964 GCCTGGCACTGATTCTTGGAGGAAGTGACACTTCAGCATCAACTCTCACATGGGCCATTT 1023
Query 1056 CTCTTCTTCTAAACAATAAAGAAATGTTAAAGAAAGCACAAGATGAGATCGACATCCACG 1115
|||||||||| ||||| |||||||||||||||||||| ||||||||||| ||| ||||||
Sbjct 1024 CTCTTCTTCTTAACAACAAAGAAATGTTAAAGAAAGCGCAAGATGAGATAGACCTCCACG 1083
Query 1116 TCGGCAGAGACAGGAACGTCGAGGATTCAGACATAGAAAATTTGGTGTATCTTCAAGCAA 1175
| |||| ||||| ||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 1084 TTGGCACAGACAAGAACGTCGAAGATTCAGACATAGAGAATTTGGTGTATCTTCAAGCGA 1143
Query 1176 TTATCAAAGAAACATTGAGATTGTATCCAGCTGGTCCTCTCTTAGGCCCTCGAGAGGCGA 1235
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1144 TTATCAAAGAAACATTGAGATTGTATCCAGCTGGTCCTCTGTTAGGCCCTCGAGAGGCGA 1203
Query 1236 TGGAAGATTGCACG-GTCGCTGGTTACTACGTTCCGTGCGGCACAAGACTCATAGTGAAC 1294
|||||||||||| | ||||| |||||| ||||||| |||||||||||||| |||||||||
Sbjct 1204 TGGAAGATTGCA-GAGTCGCAGGTTACAACGTTCCTTGCGGCACAAGACTGATAGTGAAC 1262
Query 1295 GTATGGAAAATCCAAAGAGATCCGAAAGTTTATATGGAACCAAACGAGTTCAGACCAGAG 1354
||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||
Sbjct 1263 GTATGGAAAATCCAAAGAGATCCGAAAGTGTATACGGAACCAAACGAGTTTAGACCAGAG 1322
Query 1355 AGGTTCATTACAGGAGAAGCAAAAGAGTTTGATGTGAGAGGACAAAACTTTGAGCTGATG 1414
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1323 AGGTTTATAACAGGAGAAGCAAAAGAGTTTGATGTGAGAGGGCAAAACTTTGAGCTGATG 1382
Query 1415 CCATTTGGTTCAGGAAGAAGATCATGCCCAGGCTCTTCATTGGCCATGCAAGTGCTTCAT 1474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 CCATTTGGTTCAGGAAGAAGATCATGCCCAGGCTCTTCATTGGCCATGCAAGTGCTTCAT 1442
Query 1475 TTAGGTCTTGCTCGTTTCCTTCATTCATTTGACGTGAAAACTGTTAT-GGATATGCCTGT 1533
|||||||||||||||||||||||||| ||||| | ||||||||| || |||| |||||||
Sbjct 1443 TTAGGTCTTGCTCGTTTCCTTCATTCTTTTGAAGCGAAAACTGT-ATTGGATCTGCCTGT 1501
Query 1534 TGATATGAGTGAGAACCCTGGCTTAACCATTCCTAAAGCCACGCCTCTTGAGGTTCTGAT 1593
||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1502 TGACATGAGTGAGAGCCCTGGCTTAACCATTCCTAAAGCTACGCCTCTTGAGGTTCTGAT 1561
Query 1594 CAGTCCACGTATTAAGGAAGAACTTTTTGTGTGATTAACTATTCCAGAAACATA 1647
|||||||||| |||| ||||| ||||||||||||||||||||||||| | ||||
Sbjct 1562 CAGTCCACGTCTTAACGAAGAGCTTTTTGTGTGATTAACTATTCCAGGAGCATA 1615
> Ahg491541 jgi|Araly1|491541|fgenesh2_kg.7__974__AT4G31950.1
Length=1576
Score = 2379 bits (1288), Expect = 0.0
Identities = 1482/1578 (94%), Gaps = 4/1578 (0%)
Strand=Plus/Plus
Query 53 ATGGATACTTCCCTCTTTTCTTTGTTTGTTCCAATCCTTGTTTTCGTTTTTATCGCTCTT 112
|||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGATACATCCCTCTTTTCTTTATTTGTTCCAATCCTTGTTTTAGTTTTTATCGCTCTT 60
Query 113 TTCAAGAAATCAAAGAAACCAAAATATGTAAAAGCTCCTGCACCAAGTGGTGCATGGCCC 172
|| ||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||
Sbjct 61 TTTAAGAAATCAAAGAAACCAAAACATGTGAAAGCTCCTGCCCCAAGTGGTGCATGGCCC 120
Query 173 ATCATCGGCCATCTTCACCTTCTCGGTGGCAAGGAACAGCTTCTCTACCGAACCTTAGGA 232
|||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||| |||
Sbjct 121 ATCATCGGTCATCTTCACCTTCTCAGTGGCAAGGAACAGCTTCTTTACCGAACCTTGGGA 180
Query 233 AAAATGGCTGACCACTACGGTCCAGCCATGTCGCTACAACTTGGGAGCAATGAAGCATTT 292
||||||||||||||||||||||||||||||||||||| ||| ||||||| |||| |||||
Sbjct 181 AAAATGGCTGACCACTACGGTCCAGCCATGTCGCTACGACTCGGGAGCAGTGAAACATTT 240
Query 293 GTTGTGAGCAGTTTTGAGGTGGCTAAAGATTGTTTTACTGTGAACGACAAGGCCTTGGCT 352
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 241 GTTGTGAGCAGTTTTGAGGTGGCTAAAGAATGTTTTACTGTGAACGACAAAGCCTTGGCT 300
Query 353 TCACGTCCTATGACTGCAGCTGCAAAGCACATGGGTTACAATTTTGCTGTTTTCGGGTTT 412
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCACGTCCTATGTCTGCAGCCGCAAAGCACATGGGTTACAATTTTGCTGTTTTCGGGTTT 360
Query 413 GC-CCCTTATAGCGCTTTCTGGCGTGAGATGCGTAAAATCGCAACCATCGAGCTTCTTTC 471
|| ||| ||| ||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 361 GCGCCC-TATGGCGCTTTCTGGCGCGAGATGCGTAAAATCGCAACCATCGAGCTACTTTC 419
Query 472 TAACCGGCGGCTTCAGATGCTCAAGCACGTTCGTGTTTCTGAGATCACAATGGGTGTGAA 531
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 420 TAACCGGCGGCTTCAGATGCTCAAGCACGTTCGTGTTTCTGAGATCGCAATGGGTGTGAA 479
Query 532 AGATTTGTATTCCTTGTGGTTCAAGAATGGCGGTACAAAACCAGTAATGGTTGATCTAAA 591
||||||||||||||||||| ||||||| || ||| || |||||||||||||||||||| |
Sbjct 480 AGATTTGTATTCCTTGTGGGTCAAGAAAGGTGGTGCAGAACCAGTAATGGTTGATCTACA 539
Query 592 GAGCTGGTTAGAGGACATGACTCTGAACATGATCGTGAGAATGGTGGCAGGAAAACGATA 651
|||||||||||||||||| ||||||||||||| |||||||||||||| ||||| |||||
Sbjct 540 GAGCTGGTTAGAGGACATCTCTCTGAACATGATGGTGAGAATGGTGGCCGGAAAGCGATA 599
Query 652 CTTTGGAGGCGGAGGCTCAGTATCGTCGGAGGATACTGAAGAGGCAATGCAATGCAAAAA 711
|||||||||||| ||||| |||| ||||| ||||| |||||||||| |||||||| |||
Sbjct 600 CTTTGGAGGCGGCGGCTCTTTATCCTCGGAAGATACCGAAGAGGCAAGGCAATGCAGAAA 659
Query 712 GGCCATCGCAAAGTTCTTTCACCTCATCGGTATATTCACTGTGTCAGATGCTTTTCCGAC 771
|| | ||||||| |||||||||||| ||||||||||||| ||||| |||||||||||||
Sbjct 660 GGGCGTCGCAAATTTCTTTCACCTCGTCGGTATATTCACCGTGTCCGATGCTTTTCCGAA 719
Query 772 ACTAAGtttttttGATTTGCAAGGACATGAGAAGGAGATGAAGCAAACGGGAAGCGAATT 831
|||| | | |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 720 ACTAGGGTGGTTTGATTTGCAAGGACATGAGAAGGAGATGAAGCAAACAGGAAGAGAATT 779
Query 832 AGATGTGATCCTTGAAAGATGGATTGAAAACCATCGACAACAACGCAAATTTTCAGGAAC 891
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 780 AGATGTGATCCTTGAAAGATGGATTGAAAACCATCGACAACAACGCAAAGTTTCAGGAAC 839
Query 892 GAAAGAGAATGATTCAGACTTCATCGACGTTATGATGTCGCTTGCGGAACAAGGAAAACT 951
|||| | ||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 840 GAAACATAATGATTCAGACTTCATCGACGTTATGTTGTCGCTTGCGGAACAAGGCAAACT 899
Query 952 CTCGCATCTCCAGTATGATGCAAATACTAGCATCAAATCTACCTGCCTGGCACTGATTCT 1011
||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 900 CTCGCATCTTCAATATGATGCAAATACTAGCATCAAATCTACCTGCCTGGCAATGATTCT 959
Query 1012 TGGAGGAAGTGACACTTCAGCATCAACCCTTACATGGGCCATTTCTCTTCTTCTAAACAA 1071
|||||||| ||| |||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 960 TGGAGGAACTGAGACTTCACCAGCAACCCTTACATGGGCCATTTCTCTTCTTCTAAACAA 1019
Query 1072 TAAAGAAATGTTAAAGAAAGCACAAGATGAGATCGACATCCACGTCGGCAGAGACAGGAA 1131
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1020 TAAAGAAATGTTAAAGAAAGCACAAGAAGAGATAGACATCCACGTCGGCAGAGACAGGAA 1079
Query 1132 CGTCGAGGATTCAGACATAGAAAATTTGGTGTATCTTCAAGCAATTATCAAAGAAACATT 1191
|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1080 CGTCGAAGATTCAGACATAGAGAATTTGGTGTATCTTCAAGCGATTATCAAAGAAACATT 1139
Query 1192 GAGATTGTATCCAGCTGGTCCTCTCTTAGGCCCTCGAGAGGCGATGGAAGATTGCACGGT 1251
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1140 GAGATTGTATCCAGCTGGTCCTCTCTTAGGCCATCGAGAGGCGATGGAAGATTGCACGGT 1199
Query 1252 CGCTGGTTACTACGTTCCGTGCGGCACAAGACTCATAGTGAACGTATGGAAAATCCAAAG 1311
|||||||||| ||||||| |||||||||||| | ||||||| |||||||||||||||||
Sbjct 1200 CGCTGGTTACAACGTTCCTTGCGGCACAAGAATGTTAGTGAATGTATGGAAAATCCAAAG 1259
Query 1312 AGATCCGAAAGTTTATATGGAACCAAACGAGTT-CAGACCAGAGAGGTTCATTACAGGAG 1370
||||||||||||||||||||| ||| |||| || | ||||||||||||| || |||||||
Sbjct 1260 AGATCCGAAAGTTTATATGGAGCCAGACGAATTTC-GACCAGAGAGGTTTATAACAGGAG 1318
Query 1371 AAGCAAAAGAGTTTGATGTGAGAGGACAAAACTTTGAGCTGATGCCATTTGGTTCAGGAA 1430
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1319 AAGCAAAAGAGTTTGATGTTAGAGGACAAAACTTTGAGCTGATGCCATTTGGTTCGGGAA 1378
Query 1431 GAAGATCATGCCCAGGCTCTTCATTGGCCATGCAAGTGCTTCATTTAGGTCTTGCTCGTT 1490
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1379 GAAGATCATGCCCAGGCGCTTCATTGGCTATGCAAGTGCTTCATTTAGGTCTTGCTCGTT 1438
Query 1491 TCCTTCATTCATTTGACGTGAAAACTGTTATGGATATGCCTGTTGATATGAGTGAGAACC 1550
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1439 TCCTTCATTCATTTGAAGTGAAAACTGTTATGGATATGCCTGTTGATATGAGTGAGAGCC 1498
Query 1551 CTGGCTTAACCATTCCTAAAGCCACGCCTCTTGAGGTTCTGATCAGTCCACGTATTAAGG 1610
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1499 CTGGCTTAACCATTCCTAAAGGCACGCCTCTTGAGGTTCTGATCAGTCCACGTCTTAAGG 1558
Query 1611 AAGAACTTTTTGTGTGAT 1628
||||||||||||||||||
Sbjct 1559 AAGAACTTTTTGTGTGAT 1576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68371989775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5