BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31970.1
Length=1572
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491541 jgi|Araly1|491541|fgenesh2_kg.7__974__AT4G31950.1 2479 0.0
Ahg944777 jgi|Araly1|944777|scaffold_701006.1 2241 0.0
> Ahg491541 jgi|Araly1|491541|fgenesh2_kg.7__974__AT4G31950.1
Length=1576
Score = 2479 bits (1342), Expect = 0.0
Identities = 1499/1576 (95%), Gaps = 5/1576 (0%)
Strand=Plus/Plus
Query 1 ATGGATACTTCCCTCTTTTCTTTATTTGTTCCAATCCTTGTTTTCGTTTTTATTGCTCTT 60
|||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1 ATGGATACATCCCTCTTTTCTTTATTTGTTCCAATCCTTGTTTTAGTTTTTATCGCTCTT 60
Query 61 TTTAAGAAATCAAAGAAACCAAAACATGTAAAAGCTCCTGCACCAAGTGGTGCGTGGCCC 120
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 61 TTTAAGAAATCAAAGAAACCAAAACATGTGAAAGCTCCTGCCCCAAGTGGTGCATGGCCC 120
Query 121 ATCATCGGTCATCTTCACCTTCTCAGTGGCAAGGAACAGCTTCTTTACCGAACCTTAGGA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 ATCATCGGTCATCTTCACCTTCTCAGTGGCAAGGAACAGCTTCTTTACCGAACCTTGGGA 180
Query 181 AAAATGGCTGACCAGTACGGTCCAGCCATGTCGCTACGACTTGGGAGCAGTGAAACATTT 240
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 AAAATGGCTGACCACTACGGTCCAGCCATGTCGCTACGACTCGGGAGCAGTGAAACATTT 240
Query 241 GTTGTGAGCAGTTTTGAGGTGGCTAAAGATTGTTTTACTGTGAACGACAAAGCCTTGGCT 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 GTTGTGAGCAGTTTTGAGGTGGCTAAAGAATGTTTTACTGTGAACGACAAAGCCTTGGCT 300
Query 301 TCACGTCCTAT-TACTGCAGCCGCAAAGCACATGGGTTACGATTGTGCTGTTTTCGGGTT 359
||||||||||| | |||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 301 TCACGTCCTATGT-CTGCAGCCGCAAAGCACATGGGTTACAATTTTGCTGTTTTCGGGTT 359
Query 360 TGCGCCTTATAGCGCTTTCTGGCGTGAGATGCGTAAAATCGCAACCCTCGAGCTACTTTC 419
|||||| ||| ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 360 TGCGCCCTATGGCGCTTTCTGGCGCGAGATGCGTAAAATCGCAACCATCGAGCTACTTTC 419
Query 420 TAACCGGCGGCTTCAGATGCTCAAGCATGTCCGTGTTTCTGAGATCTCAATGGTTATGCA 479
||||||||||||||||||||||||||| || ||||||||||||||| |||||| | || |
Sbjct 420 TAACCGGCGGCTTCAGATGCTCAAGCACGTTCGTGTTTCTGAGATCGCAATGGGTGTGAA 479
Query 480 AGATTTGTATTCCTTGTGGGTCAAGAAAGGTGGTTCAGAACCAGTAATGGTTGATCTAAA 539
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 480 AGATTTGTATTCCTTGTGGGTCAAGAAAGGTGGTGCAGAACCAGTAATGGTTGATCTACA 539
Query 540 GAGCTGGTTAGAGGATATGAGTCTGAACATGATGGTGAGAATGGTGGCCGGAAAGCGATA 599
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 540 GAGCTGGTTAGAGGACATCTCTCTGAACATGATGGTGAGAATGGTGGCCGGAAAGCGATA 599
Query 600 CTTTGGA---GGCGGCTCGTTATCCCCTGAAGATGCCGAAGAGGCAAGGCAATGCAGAAA 656
||||||| |||||||| |||||| | |||||| |||||||||||||||||||||||||
Sbjct 600 CTTTGGAGGCGGCGGCTCTTTATCCTCGGAAGATACCGAAGAGGCAAGGCAATGCAGAAA 659
Query 657 GGGCGTCGCAAATTTCTTTCACCTCGTCGGTATATTCACCGTGTCCGATGCTTTTCCGAA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGGCGTCGCAAATTTCTTTCACCTCGTCGGTATATTCACCGTGTCCGATGCTTTTCCGAA 719
Query 717 ACTAGGGTGGTTTGATTTTCAAGGACATGAGAAGGAGATGAAGCAAACAGGAAGAGAATT 776
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ACTAGGGTGGTTTGATTTGCAAGGACATGAGAAGGAGATGAAGCAAACAGGAAGAGAATT 779
Query 777 AGATGTGATCCTTGAAAGATGGATTGAAAACCATCGACAACAACGAAAAGTTTCAGGAAC 836
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 780 AGATGTGATCCTTGAAAGATGGATTGAAAACCATCGACAACAACGCAAAGTTTCAGGAAC 839
Query 837 GAAACACAATGATTCAGACTTCGTCGACGTTATGCTGTCGCTTGCAGAACAAGGCAAATT 896
|||||| ||||||||||||||| ||||||||||| |||||||||| |||||||||||| |
Sbjct 840 GAAACATAATGATTCAGACTTCATCGACGTTATGTTGTCGCTTGCGGAACAAGGCAAACT 899
Query 897 CTCGCATCTTCAACATGATGCAATTACTAGCATTAAATCTACCTGCCTGGCACTGATTCT 956
||||||||||||| ||||||||| ||||||||| |||||||||||||||||| |||||||
Sbjct 900 CTCGCATCTTCAATATGATGCAAATACTAGCATCAAATCTACCTGCCTGGCAATGATTCT 959
Query 957 TGGAGGAAGTGAGACTTCACCATCAACCCTTACATGGGCCATTTCTCTTCTTCTAAACAA 1016
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 960 TGGAGGAACTGAGACTTCACCAGCAACCCTTACATGGGCCATTTCTCTTCTTCTAAACAA 1019
Query 1017 TAAGGACATGTTAAAGAAAGCACAAGATGAGATCGACATCCACGTCGGCAGAGACAGGAA 1076
||| || |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1020 TAAAGAAATGTTAAAGAAAGCACAAGAAGAGATAGACATCCACGTCGGCAGAGACAGGAA 1079
Query 1077 CGTCGAGGATTCAGACATAGAAAATCTGGTGTATATTCAAGCGATTATCAAAGAAACATT 1136
|||||| |||||||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct 1080 CGTCGAAGATTCAGACATAGAGAATTTGGTGTATCTTCAAGCGATTATCAAAGAAACATT 1139
Query 1137 GAGATTGTATCCAGCTGGTCCTCTCTTAGGCCATCGAGAGGCGATAGAAGATTGCACGGT 1196
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1140 GAGATTGTATCCAGCTGGTCCTCTCTTAGGCCATCGAGAGGCGATGGAAGATTGCACGGT 1199
Query 1197 CGCTGGTTACAACGTTCGTCGCGGCACAAGAATGTTAGTGAATGTATGGAAAATCCAAAG 1256
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CGCTGGTTACAACGTTCCTTGCGGCACAAGAATGTTAGTGAATGTATGGAAAATCCAAAG 1259
Query 1257 AGATCCGAGGGTTTATATGGAGCCAAACGAATTTCGACCAGAGAGGTTTATCACAGGAGA 1316
|||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1260 AGATCCGAAAGTTTATATGGAGCCAGACGAATTTCGACCAGAGAGGTTTATAACAGGAGA 1319
Query 1317 AGCAAAAGAGTTCGATGTAAGAGGACAAAACTTTGAGCTGATGCCATTTGGTTCGGGAAG 1376
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AGCAAAAGAGTTTGATGTTAGAGGACAAAACTTTGAGCTGATGCCATTTGGTTCGGGAAG 1379
Query 1377 AAGATCATGCCCAGGCTCTTCATTGGCCATGCAAGTGCTTCATTTAGGTCTTGCTCGTTT 1436
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1380 AAGATCATGCCCAGGCGCTTCATTGGCTATGCAAGTGCTTCATTTAGGTCTTGCTCGTTT 1439
Query 1437 CCTTCAATCATTTGACGTGAAAACTGTTATGGATATGCCTGTTGATATGACTGAGAGCCC 1496
|||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1440 CCTTCATTCATTTGAAGTGAAAACTGTTATGGATATGCCTGTTGATATGAGTGAGAGCCC 1499
Query 1497 TGGCTTAACCATTCCTAAAGCCACGCCTCTTGAGATTCTGATCAGTCCACGTCTTAAGGA 1556
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1500 TGGCTTAACCATTCCTAAAGGCACGCCTCTTGAGGTTCTGATCAGTCCACGTCTTAAGGA 1559
Query 1557 AGGGCTTTATGTGTGA 1572
|| |||| |||||||
Sbjct 1560 AGAACTTTTTGTGTGA 1575
> Ahg944777 jgi|Araly1|944777|scaffold_701006.1
Length=1616
Score = 2241 bits (1213), Expect = 0.0
Identities = 1457/1577 (92%), Gaps = 7/1577 (0%)
Strand=Plus/Plus
Query 1 ATGGATACTTCCCTCTTTTCTTTATTTGTTCCAATCCTTGTTTTCGTTTTTATTGCTCTT 60
||| |||||||| ||||||||||||||||||| ||||| ||||||||||||| ||||||
Sbjct 21 ATGAATACTTCCTTCTTTTCTTTATTTGTTCCGATCCTACTTTTCGTTTTTATCGCTCTT 80
Query 61 TTTAAGAAATCAAAGAAACCAAAACATGTAAAAGCTCCTGCACCAAGTGGTGCGTGGCCC 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 81 TTTAAGAAATCAAAGAAACCAAACCATGTAAAAGCTCCTGCACCAAGTGGTGCATGGCCC 140
Query 121 ATCATCGGTCATCTTCACCTTCTCAGTGGCAAGGAACAGCTTCTTTACCGAACCTTAGGA 180
|||||||| ||||||||||||||| ||||||||||||| ||||| |||||||||||||||
Sbjct 141 ATCATCGGCCATCTTCACCTTCTCGGTGGCAAGGAACACCTTCTCTACCGAACCTTAGGA 200
Query 181 AAAATGGCTGACCAGTACGGTCCAGCCATGTCGCTACGACTTGGGAGCAGTGAAACATTT 240
|||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||
Sbjct 201 AAAATGGCTGACCACTATGGTCCAGCCATGTCGCTACGACTTGGGAGCAGTGAAGCATTT 260
Query 241 GTTGTGAGCAGTTTTGAGGTGGCTAAAGATTGTTTTACTGTGAACGACAAAGCCTTGGCT 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 GTGGTGAGCAGTTTTGAGGTGGCTAAAGATTGTTTTACTGTGAACGACAAAGCCTTGGCT 320
Query 301 TCACGTCCTATTACTGCAGCCGCAAAGCACATGGGTTACGATTGTGCTGTTTTCGGGTTT 360
||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 321 TCACGTCCTATGACTGCAGCCGCAAAGCACATGGGTTACAATTTTGCTGTTTTCGGGTTT 380
Query 361 GCGCCTTATAGCGCTTTCTGGCGTGAGATGCGTAAAATCGCAACCCTCGAGCTACTTTCT 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 381 GCGCCTTATAGCGCTTTCTGGCGTGAGATGCGTAAAATCGCAACCATCGAGCTTCTTTCT 440
Query 421 AACCGGCGGCTTCAGATGCTCAAGCATGTCCGTGTTTCTGAGATCTCAATGGTTATGCAA 480
|||||||||||||||||||||||||| || |||||||||||||||||||||| | || ||
Sbjct 441 AACCGGCGGCTTCAGATGCTCAAGCACGTTCGTGTTTCTGAGATCTCAATGGGTGTGAAA 500
Query 481 GATTTGTATTCCTTGTGGGTCAAGAAAGGTGGTTCAGAACCAGTAATGGTTGATCTAAAG 540
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 501 GATTTGTATTCCTTGTGGGTCAAGAAAGGTGGTACAGAACCAGTAATGGTTGATCTAAAG 560
Query 541 AGCTGGTTAGAGGATATGAGTCTGAACATGATGGTGAGAATGGTGGCCGGAAAGCGATAC 600
|||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||||
Sbjct 561 AGCTGGTTAGAGGACATGACTCTGAACATGATCGTGAGAATGGTGGCCGGAAAACGATAC 620
Query 601 TTTGGA---GGCGGCTCGTTATCCCCTGAAGATGCCGAAGAGGCAAGGCAATGCAGAAAG 657
|||||| || ||||| |||| | || ||| | |||||||||| |||||||| ||||
Sbjct 621 TTTGGAGGTGGTGGCTCACAATCCTCGGAGGATACTGAAGAGGCAATGCAATGCAAAAAG 680
Query 658 GGCGTCGCAAATTTCTTTCACCTCGTCGGTATATTCACCGTGTCCGATGCTTTTCCGAAA 717
| | ||||||| |||||||| ||| ||||||||||||| ||||||||||||||||||| |
Sbjct 681 GCCATCGCAAAGTTCTTTCATCTCATCGGTATATTCACTGTGTCCGATGCTTTTCCGAGA 740
Query 718 CTAGGGTGGTTTGATTTTCAAGGACATGAGAAGGAGATGAAGCAAACAGGAAGAGAATTA 777
||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 741 CTAGGGTGGTTTGATTTGCAAGGACATGAGAAGGAGATGAAGCAAACGGGAAGCGAATTA 800
Query 778 GATGTGATCCTTGAAAGATGGATTGAAAACCATCGACAACAACGAAAAGTTTCAGGAACG 837
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 801 GATGTGATCCTTGAAAGATGGATTGAAAACCATCGACAACAACGCCAAGTTTCAGGAACG 860
Query 838 AAACACAATGATTCAGACTTCGTCGACGTTATGCTGTCGCTTGCAGAACAAGGCAAATTC 897
||| | ||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 861 AAAGAGAATGATTCAGACTTCATCGACGTTATGTTGTCGCTTGCAGAACAAGGCAAACTC 920
Query 898 TCGCATCTTCAACATGATGCAATTACTAGCATTAAATCTACCTGCCTGGCACTGATTCTT 957
|||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 921 TCGCATCTTCAATATGATGCAAATACTAGCATCAAATCTACCTGCCTGGCACTGATTCTT 980
Query 958 GGAGGAAGTGAGACTTCACCATCAACCCTTACATGGGCCATTTCTCTTCTTCTAAACAAT 1017
||||||||||| |||||| ||||||| || ||||||||||||||||||||||| |||||
Sbjct 981 GGAGGAAGTGACACTTCAGCATCAACTCTCACATGGGCCATTTCTCTTCTTCTTAACAAC 1040
Query 1018 AAGGACATGTTAAAGAAAGCACAAGATGAGATCGACATCCACGTCGGCAGAGACAGGAAC 1077
|| || |||||||||||||| ||||||||||| ||| ||||||| |||| ||||| ||||
Sbjct 1041 AAAGAAATGTTAAAGAAAGCGCAAGATGAGATAGACCTCCACGTTGGCACAGACAAGAAC 1100
Query 1078 GTCGAGGATTCAGACATAGAAAATCTGGTGTATATTCAAGCGATTATCAAAGAAACATTG 1137
||||| |||||||||||||| ||| |||||||| ||||||||||||||||||||||||||
Sbjct 1101 GTCGAAGATTCAGACATAGAGAATTTGGTGTATCTTCAAGCGATTATCAAAGAAACATTG 1160
Query 1138 AGATTGTATCCAGCTGGTCCTCTCTTAGGCCATCGAGAGGCGATAGAAGATTGCACG-GT 1196
||||||||||||||||||||||| ||||||| |||||||||||| |||||||||| | ||
Sbjct 1161 AGATTGTATCCAGCTGGTCCTCTGTTAGGCCCTCGAGAGGCGATGGAAGATTGCA-GAGT 1219
Query 1197 CGCTGGTTACAACGTTCGTCGCGGCACAAGAATGTTAGTGAATGTATGGAAAATCCAAAG 1256
||| ||||||||||||| | ||||||||||| || ||||||| |||||||||||||||||
Sbjct 1220 CGCAGGTTACAACGTTCCTTGCGGCACAAGACTGATAGTGAACGTATGGAAAATCCAAAG 1279
Query 1257 AGATCCGAGGGTTTATATGGAGCCAAACGAATTTCGACCAGAGAGGTTTATCACAGGAGA 1316
|||||||| || |||| ||| |||||||| ||| |||||||||||||||| ||||||||
Sbjct 1280 AGATCCGAAAGTGTATACGGAACCAAACGAGTTTAGACCAGAGAGGTTTATAACAGGAGA 1339
Query 1317 AGCAAAAGAGTTCGATGTAAGAGGACAAAACTTTGAGCTGATGCCATTTGGTTCGGGAAG 1376
|||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1340 AGCAAAAGAGTTTGATGTGAGAGGGCAAAACTTTGAGCTGATGCCATTTGGTTCAGGAAG 1399
Query 1377 AAGATCATGCCCAGGCTCTTCATTGGCCATGCAAGTGCTTCATTTAGGTCTTGCTCGTTT 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1400 AAGATCATGCCCAGGCTCTTCATTGGCCATGCAAGTGCTTCATTTAGGTCTTGCTCGTTT 1459
Query 1437 CCTTCAATCATTTGACGTGAAAACTGTTAT-GGATATGCCTGTTGATATGACTGAGAGCC 1495
|||||| || ||||| | ||||||||| || |||| |||||||||| |||| ||||||||
Sbjct 1460 CCTTCATTCTTTTGAAGCGAAAACTGT-ATTGGATCTGCCTGTTGACATGAGTGAGAGCC 1518
Query 1496 CTGGCTTAACCATTCCTAAAGCCACGCCTCTTGAGATTCTGATCAGTCCACGTCTTAAGG 1555
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
Sbjct 1519 CTGGCTTAACCATTCCTAAAGCTACGCCTCTTGAGGTTCTGATCAGTCCACGTCTTAACG 1578
Query 1556 AAGGGCTTTATGTGTGA 1572
||| ||||| |||||||
Sbjct 1579 AAGAGCTTTTTGTGTGA 1595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58887518770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5