BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31980.1
Length=2043
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888917 jgi|Araly1|888917|Al_scaffold_0007_903 3049 0.0
> Ahg888917 jgi|Araly1|888917|Al_scaffold_0007_903
Length=2034
Score = 3049 bits (1651), Expect = 0.0
Identities = 1921/2050 (94%), Gaps = 23/2050 (1%)
Strand=Plus/Plus
Query 1 ATGTTTTG-CAGAAACGTATCGGTGAGGCGGAAGAAGAATTCTGGTACGGTACCGGTTTA 59
|||||||| | ||||||| |||||||||||||||||||| |||||| |||| ||||||||
Sbjct 1 ATGTTTTGTC-GAAACGTCTCGGTGAGGCGGAAGAAGAAATCTGGTTCGGTTCCGGTTTA 59
Query 60 TCTGAATGTTTACGATCTTACCCCAATGAATGTTTATGGTTACTGGCTCGGAATTGGGAT 119
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TCTGAATGTGTACGATCTTACCCCAATGAATGTTTATGGTTACTGGCTCGGAATTGGGAT 119
Query 120 CTATCACTCTGGTCTCGAAGTTCATGGGGTTGAGTATGGATACGGGGCACACGAGAAATC 179
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 120 CTATCACTCTGGTCTTGAAGTTCATGGGGTTGAATATGGATACGGGGCACACGAGCATTC 179
Query 180 GAGCTCGGGGATTTTTGAGGTGGAGCCAAAGAAGTGTCCTGGTTTCACATTCAGGAAATC 239
||||||||| || ||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 180 GAGCTCGGGAATCTTTGAAGTTGAGCCAAAGAAGTGTCCTGGTTTCACGTTCAGGAAATC 239
Query 240 GATTCTTGTTGGTGAAACAGAGATGAAGGCTAAAGAAGTTCGAAGCTTTATGGAGAAATT 299
||||||||| |||||||||||||||| ||||||||||||| ||| |||||||||||||||
Sbjct 240 GATTCTTGTGGGTGAAACAGAGATGAGGGCTAAAGAAGTTAGAACCTTTATGGAGAAATT 299
Query 300 ATCAGAAGAGTATCAGGGTAACAAGTACCATCTCATCACAAGGAACTGCAACCATTTCTG 359
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 ATCAGAAGAGTATCAGGGAAACAAATACCATCTCATCACAAGGAACTGCAACCATTTCTG 359
Query 360 CAACCATGTTTCTTTGAAACTTACTCACAAA-TCAATCCCTAGTTGGGTCAACCGTCTTG 418
||||||||||| ||||||||| ||||| ||| ||||||||||||||||||||||||||||
Sbjct 360 CAACCATGTTTGTTTGAAACTAACTCA-AAACTCAATCCCTAGTTGGGTCAACCGTCTTG 418
Query 419 CTCGCTTAGGTTTCCTCTGCAACTGTGTCTTGCCGGCTTGCTTGAACGAGACTAAAGTGA 478
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 419 CTCGCTTAGGTTTCCTCTGCAACTGTGTGTTGCCGGCTTGCTTGAACGAGACTAAAGTGA 478
Query 479 AGCGGGTAggaaaagacgggaagctgctcttggaaggagaaaatacgaagaagaagaaga 538
|| ||||||||||||||||||| ||||||||||||||||| || ||||||| |||| |
Sbjct 479 AGAGGGTAGGAAAAGACGGGAA---GCTCTTGGAAGGAGAAAGTAAGAAGAAG-AGAA-A 533
Query 539 ggaagaagaaaatacgaagaagCCGATCAGGTCCTTTATCTTCGTCTTCTTCAAATGCAA 598
||||||| ||| || ||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 534 -GAAGAAG-AAA-GCG-AGAAGCCGATCAGGTCCGTTATCTTCGTCTTCTTCAAATTCAA 589
Query 599 GATTAGATAATACTCCTACACATAACAGATCAATATCAACGGGTAATCCTCCTCTTTCTG 658
| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 590 GGTTAGATAATAATCCTACACATAACAGATCAAAATCAACGGGTAATCCTCCTCTTTCTT 649
Query 659 CTTCTCCATCTTGTCCTTTGAGACCTCGACTTCCTTCTGTTGCATCTGGAGCTGAAGATC 718
||||||| |||||||| ||||||||||| |||||| |||||||||||||||| ||||||
Sbjct 650 CTTCTCCGTCTTGTCCAATGAGACCTCGAGTTCCTTGTGTTGCATCTGGAGCTCAAGATC 709
Query 719 AAAATCCTCCAAG-CAGA-TACCTCAACGCCAGCTTCTGCAGTGAAGTGCAATGTCACCG 776
| || |||||||| || | || | || ||||||||||||||||||||||||||||| ||
Sbjct 710 AGAAGCCTCCAAGCCATATTA-AT-AATGCCAGCTTCTGCAGTGAAGTGCAATGTCA-CG 766
Query 777 -GCTTTGCTTTGCATATGAGAGGATGAATCAGAATGAAGGTGACGCCCTTGTCGATTCCA 835
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 767 TGCTTTGCTTTGCATATGAGAGGATGAATCAGAATGAAGGTGACGCCCTTGTAGATTCCA 826
Query 836 TCAAAGCGAAGTTAGCCTTTTTATCTTCTCTTTCCACCAAATGCTGTATATACAAGGTAC 895
||||||| ||||||| |||||| || |||||||| |||||||||||||||||||||||||
Sbjct 827 TCAAAGCAAAGTTAGACTTTTTGTCATCTCTTTCAACCAAATGCTGTATATACAAGGTAC 886
Query 896 CTAATAAGCTCCGCAGACTCAATCCTGATGCATATACGCCTCGGCTTGTGTCTTTTGGCC 955
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 CTAATAAGCTCCGTAGACTCAATCCTGATGCATATACGCCTCGGCTTGTGTCTTTTGGCC 946
Query 956 CGCTTCATCGTGGTAAAGAAGAGCTTCAAGCTATGGAAGATCAGAAATACAGGTATTTGC 1015
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 947 CGCTACATCGTGGTAAAGAAGAGCTTCAAGCTATGGAAGATCATAAATACAGGTATTTGC 1006
Query 1016 TGAGTTTTATCCCTAGAACGAACTCTAGTCTAGAGGACCTTGTTAGACTTGCTAGGACTT 1075
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1007 AGAGTTTTATCCCTAGAACAAACTCTAGTCTAGAGGACCTTGTTAGAGTTGCTAGGACTT 1066
Query 1076 GGGAACAAAATGCTCGCAGCTGTTATGCAGAAGATGTGAAACTTCATAGCGATGAGTTTG 1135
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1067 GGGAACAAAATGCTCGCAGCTGTTACGCAGAAGATGTGAAACTTAATAGCGATGAGTTTG 1126
Query 1136 TTGA-GATGTTAGTTGTAGATGGTAGCTTCTTGGTTGAACTTCTTTTGAGGTCTCATTAT 1194
|| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1127 TT-ATGATGTTAGTTGTAGATGGTAGCTTCCTGGTTGAACTTCTTTTGAGGTCTCATTAT 1185
Query 1195 CCTCGACTTAGAGGCGAGAATGATCGCATATTTGGCAATTCAATGATGATCACCGACGTG 1254
||||| |||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||
Sbjct 1186 CCTCGGCTTAGAGGCGAGAATGATCGGATATTTGGGAATTCAATGATTATCACTGACGTG 1245
Query 1255 TGCCGTGACATGATTTTGATAGAAAATCAGTTACCCTTTTTCGTTGTGAAGGAGATATTT 1314
|||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||
Sbjct 1246 TGCCGTGACATGATTTTGATCGAAAATCAGTTACCCTTTTTCGTTCTAAAGGAGATATTT 1305
Query 1315 CTTCTCTTGTTGAAT-TACTACCAACAAGGAACACCTTCAATCATACAGCTCGCGCAACG 1373
||||||||||| || |||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1306 CTTCTCTTGTT-TATATACTACCAACAAGGAACACCTTCAATCACACAGCTAGCGCAACG 1364
Query 1374 CCACTTCAGTTATTTCTTGAGCCGCATTGATGATGAGAAGTTTATTACAGAGCCAGAACA 1433
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1365 CCACTTCAGTTATTTCTTGAGCCGCATTGATGATGAGAAGTTTATTTCAGAGCCAGAACA 1424
Query 1434 TTTTGTTGATCTTCTGAGGTCTTGTTATCTGCCACAGTTTCCAATTAAATTAGAATACAC 1493
||||||||||||||||||||||||||||||||||| | ||||||||| ||| ||||||||
Sbjct 1425 TTTTGTTGATCTTCTGAGGTCTTGTTATCTGCCACTGGTTCCAATTAGATTGGAATACAC 1484
Query 1494 TACAGTGAAAGTGGACAATGCACCTGAAGCAACAGAGCTTCACACTGCTGGTGTTAGGTT 1553
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 TACATTGAAAGTGGACAATGCACCTGAAGCAACAGAGCTTCACACTGCTGGTGTTAGGTT 1544
Query 1554 CAAGCCAGCAGAGACCAGTAGTTGTTTACTTGACATTAGTTTTGCTGATGGAGTACTGAA 1613
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 CAAGCCAGCAGAGAGCACTAGTTGTTTACTTGACATTAGTTTTGCTGATGGAGTACTGAA 1604
Query 1614 GATTCCAACCATTGTCGTCGATGATCTCACGGAATCCCTCTACAAAAACATCATTGGGTT 1673
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||
Sbjct 1605 GATTCCAACCATTGTCGTCGATGATCTCACGGAGTCCCTCTACAGAAACATCATTGTGTA 1664
Query 1674 TGAACAATGTCGTTGCTCAAATAAAAACTTCCTCGACTACATCATGCTGCTCGGTTGCTT 1733
||||||||||| |||||||||||| ||||||||| |||||| || ||||||||||||||
Sbjct 1665 TGAACAATGTCATTGCTCAAATAAGAACTTCCTCCACTACACCACACTGCTCGGTTGCTT 1724
Query 1734 CATTAAATCCCCTACAGATGCTGACTTGCTCATCCACAGTGGGATCATCGTAAACTATCT 1793
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||
Sbjct 1725 CATTAAATCCCCTACAGATGCTGACTTGCTCATCCGCAGTGGGATCATCGTGAACCATCT 1784
Query 1794 CGGGAACTCAGTAGATGTTTCAAACTTGTTCAATAGCATCAGCAAAGAGGTTATCTATGA 1853
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1785 GGGGAACTCAGTAGATGTTTCGAAGTTGTTCAATAGCATCAGCAAAGAGGTTATCTATGA 1844
Query 1854 CAGAAGATTCTACTTTTCGATGCTCTCTGAGAACCTTCAAGCTTACTGCAACACACCATG 1913
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1845 CAGAAGATTCTACTTTTCGACACTCTCTGAGAACCTTCAAGCTTACTGCAACACACCATG 1904
Query 1914 GAACAGGTGGAAGGCGATTCTGAGACGTGACTACTTCCACAATCCTTGGGCAGTTGCTTC 1973
||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1905 GAATAGGTGGAAGGCAATTCTGAGACGTGACTACTTCCACAATCCTTGGTCAGTTGCTTC 1964
Query 1974 TGTTTTTGCAGCTTTACTTCTTCTCCTTCTCACTTTCATACAGTCCGTATGCTCTATCTT 2033
||| ||||| ||||||||||||||||||||| ||||||| ||| | ||||||||||||||
Sbjct 1965 TGTGTTTGCTGCTTTACTTCTTCTCCTTCTCGCTTTCATTCAGGCTGTATGCTCTATCTT 2024
Query 2034 GGCTCTGTAA 2043
|||| |||||
Sbjct 2025 GGCTTTGTAA 2034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76828024165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5