BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G31980.1 Length=2043 Score E Sequences producing significant alignments: (Bits) Value Ahg888917 jgi|Araly1|888917|Al_scaffold_0007_903 3049 0.0 > Ahg888917 jgi|Araly1|888917|Al_scaffold_0007_903 Length=2034 Score = 3049 bits (1651), Expect = 0.0 Identities = 1921/2050 (94%), Gaps = 23/2050 (1%) Strand=Plus/Plus Query 1 ATGTTTTG-CAGAAACGTATCGGTGAGGCGGAAGAAGAATTCTGGTACGGTACCGGTTTA 59 |||||||| | ||||||| |||||||||||||||||||| |||||| |||| |||||||| Sbjct 1 ATGTTTTGTC-GAAACGTCTCGGTGAGGCGGAAGAAGAAATCTGGTTCGGTTCCGGTTTA 59 Query 60 TCTGAATGTTTACGATCTTACCCCAATGAATGTTTATGGTTACTGGCTCGGAATTGGGAT 119 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 TCTGAATGTGTACGATCTTACCCCAATGAATGTTTATGGTTACTGGCTCGGAATTGGGAT 119 Query 120 CTATCACTCTGGTCTCGAAGTTCATGGGGTTGAGTATGGATACGGGGCACACGAGAAATC 179 ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| | || Sbjct 120 CTATCACTCTGGTCTTGAAGTTCATGGGGTTGAATATGGATACGGGGCACACGAGCATTC 179 Query 180 GAGCTCGGGGATTTTTGAGGTGGAGCCAAAGAAGTGTCCTGGTTTCACATTCAGGAAATC 239 ||||||||| || ||||| || |||||||||||||||||||||||||| ||||||||||| Sbjct 180 GAGCTCGGGAATCTTTGAAGTTGAGCCAAAGAAGTGTCCTGGTTTCACGTTCAGGAAATC 239 Query 240 GATTCTTGTTGGTGAAACAGAGATGAAGGCTAAAGAAGTTCGAAGCTTTATGGAGAAATT 299 ||||||||| |||||||||||||||| ||||||||||||| ||| ||||||||||||||| Sbjct 240 GATTCTTGTGGGTGAAACAGAGATGAGGGCTAAAGAAGTTAGAACCTTTATGGAGAAATT 299 Query 300 ATCAGAAGAGTATCAGGGTAACAAGTACCATCTCATCACAAGGAACTGCAACCATTTCTG 359 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 300 ATCAGAAGAGTATCAGGGAAACAAATACCATCTCATCACAAGGAACTGCAACCATTTCTG 359 Query 360 CAACCATGTTTCTTTGAAACTTACTCACAAA-TCAATCCCTAGTTGGGTCAACCGTCTTG 418 ||||||||||| ||||||||| ||||| ||| |||||||||||||||||||||||||||| Sbjct 360 CAACCATGTTTGTTTGAAACTAACTCA-AAACTCAATCCCTAGTTGGGTCAACCGTCTTG 418 Query 419 CTCGCTTAGGTTTCCTCTGCAACTGTGTCTTGCCGGCTTGCTTGAACGAGACTAAAGTGA 478 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 419 CTCGCTTAGGTTTCCTCTGCAACTGTGTGTTGCCGGCTTGCTTGAACGAGACTAAAGTGA 478 Query 479 AGCGGGTAggaaaagacgggaagctgctcttggaaggagaaaatacgaagaagaagaaga 538 || ||||||||||||||||||| ||||||||||||||||| || ||||||| |||| | Sbjct 479 AGAGGGTAGGAAAAGACGGGAA---GCTCTTGGAAGGAGAAAGTAAGAAGAAG-AGAA-A 533 Query 539 ggaagaagaaaatacgaagaagCCGATCAGGTCCTTTATCTTCGTCTTCTTCAAATGCAA 598 ||||||| ||| || ||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 534 -GAAGAAG-AAA-GCG-AGAAGCCGATCAGGTCCGTTATCTTCGTCTTCTTCAAATTCAA 589 Query 599 GATTAGATAATACTCCTACACATAACAGATCAATATCAACGGGTAATCCTCCTCTTTCTG 658 | |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 590 GGTTAGATAATAATCCTACACATAACAGATCAAAATCAACGGGTAATCCTCCTCTTTCTT 649 Query 659 CTTCTCCATCTTGTCCTTTGAGACCTCGACTTCCTTCTGTTGCATCTGGAGCTGAAGATC 718 ||||||| |||||||| ||||||||||| |||||| |||||||||||||||| |||||| Sbjct 650 CTTCTCCGTCTTGTCCAATGAGACCTCGAGTTCCTTGTGTTGCATCTGGAGCTCAAGATC 709 Query 719 AAAATCCTCCAAG-CAGA-TACCTCAACGCCAGCTTCTGCAGTGAAGTGCAATGTCACCG 776 | || |||||||| || | || | || ||||||||||||||||||||||||||||| || Sbjct 710 AGAAGCCTCCAAGCCATATTA-AT-AATGCCAGCTTCTGCAGTGAAGTGCAATGTCA-CG 766 Query 777 -GCTTTGCTTTGCATATGAGAGGATGAATCAGAATGAAGGTGACGCCCTTGTCGATTCCA 835 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 767 TGCTTTGCTTTGCATATGAGAGGATGAATCAGAATGAAGGTGACGCCCTTGTAGATTCCA 826 Query 836 TCAAAGCGAAGTTAGCCTTTTTATCTTCTCTTTCCACCAAATGCTGTATATACAAGGTAC 895 ||||||| ||||||| |||||| || |||||||| ||||||||||||||||||||||||| Sbjct 827 TCAAAGCAAAGTTAGACTTTTTGTCATCTCTTTCAACCAAATGCTGTATATACAAGGTAC 886 Query 896 CTAATAAGCTCCGCAGACTCAATCCTGATGCATATACGCCTCGGCTTGTGTCTTTTGGCC 955 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 887 CTAATAAGCTCCGTAGACTCAATCCTGATGCATATACGCCTCGGCTTGTGTCTTTTGGCC 946 Query 956 CGCTTCATCGTGGTAAAGAAGAGCTTCAAGCTATGGAAGATCAGAAATACAGGTATTTGC 1015 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 947 CGCTACATCGTGGTAAAGAAGAGCTTCAAGCTATGGAAGATCATAAATACAGGTATTTGC 1006 Query 1016 TGAGTTTTATCCCTAGAACGAACTCTAGTCTAGAGGACCTTGTTAGACTTGCTAGGACTT 1075 |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 1007 AGAGTTTTATCCCTAGAACAAACTCTAGTCTAGAGGACCTTGTTAGAGTTGCTAGGACTT 1066 Query 1076 GGGAACAAAATGCTCGCAGCTGTTATGCAGAAGATGTGAAACTTCATAGCGATGAGTTTG 1135 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct 1067 GGGAACAAAATGCTCGCAGCTGTTACGCAGAAGATGTGAAACTTAATAGCGATGAGTTTG 1126 Query 1136 TTGA-GATGTTAGTTGTAGATGGTAGCTTCTTGGTTGAACTTCTTTTGAGGTCTCATTAT 1194 || | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1127 TT-ATGATGTTAGTTGTAGATGGTAGCTTCCTGGTTGAACTTCTTTTGAGGTCTCATTAT 1185 Query 1195 CCTCGACTTAGAGGCGAGAATGATCGCATATTTGGCAATTCAATGATGATCACCGACGTG 1254 ||||| |||||||||||||||||||| |||||||| ||||||||||| ||||| |||||| Sbjct 1186 CCTCGGCTTAGAGGCGAGAATGATCGGATATTTGGGAATTCAATGATTATCACTGACGTG 1245 Query 1255 TGCCGTGACATGATTTTGATAGAAAATCAGTTACCCTTTTTCGTTGTGAAGGAGATATTT 1314 |||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||| Sbjct 1246 TGCCGTGACATGATTTTGATCGAAAATCAGTTACCCTTTTTCGTTCTAAAGGAGATATTT 1305 Query 1315 CTTCTCTTGTTGAAT-TACTACCAACAAGGAACACCTTCAATCATACAGCTCGCGCAACG 1373 ||||||||||| || |||||||||||||||||||||||||||| |||||| |||||||| Sbjct 1306 CTTCTCTTGTT-TATATACTACCAACAAGGAACACCTTCAATCACACAGCTAGCGCAACG 1364 Query 1374 CCACTTCAGTTATTTCTTGAGCCGCATTGATGATGAGAAGTTTATTACAGAGCCAGAACA 1433 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1365 CCACTTCAGTTATTTCTTGAGCCGCATTGATGATGAGAAGTTTATTTCAGAGCCAGAACA 1424 Query 1434 TTTTGTTGATCTTCTGAGGTCTTGTTATCTGCCACAGTTTCCAATTAAATTAGAATACAC 1493 ||||||||||||||||||||||||||||||||||| | ||||||||| ||| |||||||| Sbjct 1425 TTTTGTTGATCTTCTGAGGTCTTGTTATCTGCCACTGGTTCCAATTAGATTGGAATACAC 1484 Query 1494 TACAGTGAAAGTGGACAATGCACCTGAAGCAACAGAGCTTCACACTGCTGGTGTTAGGTT 1553 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1485 TACATTGAAAGTGGACAATGCACCTGAAGCAACAGAGCTTCACACTGCTGGTGTTAGGTT 1544 Query 1554 CAAGCCAGCAGAGACCAGTAGTTGTTTACTTGACATTAGTTTTGCTGATGGAGTACTGAA 1613 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 1545 CAAGCCAGCAGAGAGCACTAGTTGTTTACTTGACATTAGTTTTGCTGATGGAGTACTGAA 1604 Query 1614 GATTCCAACCATTGTCGTCGATGATCTCACGGAATCCCTCTACAAAAACATCATTGGGTT 1673 ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| || Sbjct 1605 GATTCCAACCATTGTCGTCGATGATCTCACGGAGTCCCTCTACAGAAACATCATTGTGTA 1664 Query 1674 TGAACAATGTCGTTGCTCAAATAAAAACTTCCTCGACTACATCATGCTGCTCGGTTGCTT 1733 ||||||||||| |||||||||||| ||||||||| |||||| || |||||||||||||| Sbjct 1665 TGAACAATGTCATTGCTCAAATAAGAACTTCCTCCACTACACCACACTGCTCGGTTGCTT 1724 Query 1734 CATTAAATCCCCTACAGATGCTGACTTGCTCATCCACAGTGGGATCATCGTAAACTATCT 1793 ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| Sbjct 1725 CATTAAATCCCCTACAGATGCTGACTTGCTCATCCGCAGTGGGATCATCGTGAACCATCT 1784 Query 1794 CGGGAACTCAGTAGATGTTTCAAACTTGTTCAATAGCATCAGCAAAGAGGTTATCTATGA 1853 |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 1785 GGGGAACTCAGTAGATGTTTCGAAGTTGTTCAATAGCATCAGCAAAGAGGTTATCTATGA 1844 Query 1854 CAGAAGATTCTACTTTTCGATGCTCTCTGAGAACCTTCAAGCTTACTGCAACACACCATG 1913 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1845 CAGAAGATTCTACTTTTCGACACTCTCTGAGAACCTTCAAGCTTACTGCAACACACCATG 1904 Query 1914 GAACAGGTGGAAGGCGATTCTGAGACGTGACTACTTCCACAATCCTTGGGCAGTTGCTTC 1973 ||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1905 GAATAGGTGGAAGGCAATTCTGAGACGTGACTACTTCCACAATCCTTGGTCAGTTGCTTC 1964 Query 1974 TGTTTTTGCAGCTTTACTTCTTCTCCTTCTCACTTTCATACAGTCCGTATGCTCTATCTT 2033 ||| ||||| ||||||||||||||||||||| ||||||| ||| | |||||||||||||| Sbjct 1965 TGTGTTTGCTGCTTTACTTCTTCTCCTTCTCGCTTTCATTCAGGCTGTATGCTCTATCTT 2024 Query 2034 GGCTCTGTAA 2043 |||| ||||| Sbjct 2025 GGCTTTGTAA 2034 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76828024165 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5