BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G31985.1

Length=385
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg944771 jgi|Araly1|944771|scaffold_701000.1                        372    1e-102
  Ahg932651 jgi|Araly1|932651|scaffold_400639.1                        220    4e-57 


> Ahg944771 jgi|Araly1|944771|scaffold_701000.1
Length=225

 Score =  372 bits (201),  Expect = 1e-102
 Identities = 216/223 (97%), Gaps = 2/223 (1%)
 Strand=Plus/Plus

Query  20   AATCTCACGACTTCAAGATGCCGTCGCACAAGTCGTTTATGATTAAGAAGAAGTTGG-GA  78
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| | 
Sbjct  4    AATCTCACGACTTCAAGATGCCGTCGCACAAGTCGTTTATGATCAAGAAGAAGCTGGCG-  62

Query  79   AAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATTCGTCTTCGTACCGACAACACC  138
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  63   AAGAAGATGAGACAGAACAGGCCTATTCCCCACTGGATTCGTCTTCGTACCGACAACACC  122

Query  139  ATCAGGTACAATGCCAAGCGCAGGCACTGGCGTAGAACCAAGCTCGGATTCTAAGTGATA  198
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  123  ATCAGGTACAATGCCAAGCGCAGGCACTGGCGTAGAACCAAGCTCGGATTCTAAGTGATA  182

Query  199  AGCCTTCTAAAAGAGTCTTCTTTATCTGTTTGGTTTAGCATTT  241
            |||||||| |||||| |||||||||||||||||||||||||||
Sbjct  183  AGCCTTCTTAAAGAGCCTTCTTTATCTGTTTGGTTTAGCATTT  225


> Ahg932651 jgi|Araly1|932651|scaffold_400639.1
Length=197

 Score =  220 bits (119),  Expect = 4e-57
 Identities = 150/165 (91%), Gaps = 2/165 (1%)
 Strand=Plus/Plus

Query  30   CTTCAAGATGCCGTCGCACAAGTCGTTTATGATTAAGAAG-AAGTTGGGAAAGAAGATGA  88
            ||| ||||||||||||||||||||||| |||||||||||| || | | | ||||| ||||
Sbjct  14   CTTGAAGATGCCGTCGCACAAGTCGTTCATGATTAAGAAGAAACTAGCG-AAGAAAATGA  72

Query  89   GACAGAACAGGCCTATTCCTCACTGGATTCGTCTTCGTACCGACAACACCATCAGGTACA  148
            | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  73   GGCAAAACAGGCCTATTCCTCACTGGATTCGTCTTCGTACCGACAACACCATCAGGTACA  132

Query  149  ATGCCAAGCGCAGGCACTGGCGTAGAACCAAGCTCGGATTCTAAG  193
            |||| ||||| ||||| ||||| ||||||||||| ||||||||||
Sbjct  133  ATGCTAAGCGTAGGCATTGGCGCAGAACCAAGCTTGGATTCTAAG  177



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13774167629


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5