BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31990.3
Length=1712
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491537 jgi|Araly1|491537|fgenesh2_kg.7__970__AT4G31990.2 2320 0.0
> Ahg491537 jgi|Araly1|491537|fgenesh2_kg.7__970__AT4G31990.2
Length=1565
Score = 2320 bits (1256), Expect = 0.0
Identities = 1450/1541 (94%), Gaps = 24/1541 (2%)
Strand=Plus/Plus
Query 29 AATGACT-ATCTTACCCCTATCAAGACAAGCCTGAGAAGTGAGAACAACTTCGTAGACAT 87
||||||| || ||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 1 AATGACTAAT-TTACCCCTATCAAGACAAGCC-------T-AGAACAACTTCATAGACAT 51
Query 88 CGTCGTGTCTCTCTCTCGTTGAATCCTTGTTAATCTTTTTCTTCAA--TCTCTCGATCTG 145
|||||||||||||||||| |||||||||| ||| |||||||||| |||||||| ||
Sbjct 52 CGTCGTGTCTCTCTCTCGGTGAATCCTTG---ATC-TTTTCTTCAATCTCTCTCGACCTA 107
Query 146 ATCGTTATCGAAACCGCGCGATTCTAACCAAGTCCAGTTAATTTTGTGCTCCATAGC-GA 204
|||||| |||||||||| ||||||||||||||||||| | | |||| | || | || |
Sbjct 108 ATCGTTTTCGAAACCGCACGATTCTAACCAAGTCCAG-TGA-TTTGAGATCTGT-GCAGC 164
Query 205 TT--CCATGGCTTCTTTAATGTTATCTCTCGGTTCCACTTCTCTGTTACCGCGCGAGATT 262
|| |||||||| | |||||||||||||||||| || |||| |||||||||||||||
Sbjct 165 TTAATAATGGCTTCGTCAATGTTATCTCTCGGTTCAACACCTCTATTACCGCGCGAGATT 224
Query 263 AACAAGGATAAGCTAAAGCTTGGAACTTCTGCTTCGAACCCGTTCCTAAAAGCAAAGTCT 322
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 225 AACAAGGATAAGCTAAAGCTTGGAACTTCTAATTCGAAGCCGTTCCTAAAAGCAAAGTCT 284
Query 323 TTTAGCAGAGTGACTATGACGGTTGCAGTGAAGCCTTCTCGTTTCGAGGGTATAACTATG 382
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 285 TTTAGCAGGGTGACTATGACGGTTGCAGTCAAGCCTTCTCGTTTCGAGGGTATAACTATG 344
Query 383 GCTCCACCAGACCCTATTCTTGGAGTCAGTGAAGCATTCAAAGCTGACACTAACGGGATG 442
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||
Sbjct 345 GCTCCACCAGACCCTATTCTTGGAGTCAGCGAAGCATTCAAAGCTGACAATAACGAGATG 404
Query 443 AAACTCAATCTTGGTGTTGGTGCTTATCGTACTGAGGAACTCCAGCCTTATGTGCTTAAT 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 AAACTCAATCTTGGTGTTGGTGCTTATCGTACTGAGGAACTCCAGCCTTATGTGCTTAAT 464
Query 503 GTTGTTAAAAAGGCGGAGAATTTGATGTTGGAGAGAGGAGATAACAAAGAGTATCTTCCA 562
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 GTTGTTAAAAAGGCAGAGAATTTGATGTTGGAGAGAGGAGATAACAAAGAGTATCTTCCA 524
Query 563 ATTGAGGGGTTGGCAGCATTCAACAAGGCTACTGCTGAGTTGCTATTTGGAGCTGGTCAT 622
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 ATTGAGGGTTTGGCAGCATTCAACAAGGCTACTGCTGAGTTGCTATTTGGAGCTGGTCAT 584
Query 623 CCTGTTATTAAGGAACAAAGAGTAGCAACAATTCAGGGTCTTTCGGGAACAGGTTCACTG 682
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 585 CCTGTTATCAAGGAACAAAGAGTGGCAACAATTCAAGGTCTTTCGGGAACAGGTTCACTG 644
Query 683 CGATTAGCAGCGGCTCTTATAGAGCGTTATTTCCCTGGAGCAAAAGTTGTGATCTCATCA 742
|||||||| || |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 645 CGATTAGCTGCAGCTCTTATAGAGCGTTATTTTCCTGGAGCAAAAGTTGTGATATCATCA 704
Query 743 CCAACCTGGGGTAATCACAAGAATATCTTCAATGATGCCAAAGTTCCGTGGTCCGAATAC 802
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 705 CCAACCTGGGGTAATCACAAGAATATTTTCAATGATGCCAAAGTTCCGTGGTCCGAATAC 764
Query 803 CGCTACTATGATCCAAAAACAATTGGTTTGGATTTTGAGGGAATGATAGCAGATATAAAG 862
|||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 765 CGCTACTATGATCCCAAGACAATTGGTTTGGACTTTGAGGGAATGATAGCAGATATAAAG 824
Query 863 GAAGCTCCAGAAGGATCCTTCATCTTGCTTCACGGATGTGCTCACAACCCAACTGGAATT 922
||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 825 GAAGCTCCAGAAGGATCTTTCATTTTGCTTCATGGATGTGCTCACAACCCAACTGGAATT 884
Query 923 GACCCAACACCAGAACAGTGGGTAAAAATTGCTGATGTCATTCAGGAAAAGAACCATATC 982
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 885 GACCCAACCCCAGAACAGTGGGTAAAAATTGCTGATGTCATTCAGGAAAAGAACCACATC 944
Query 983 CCATTTTTCGATGTTGCATACCAGGGCTTTGCTAGTGGAAGCCTTGATGAAGATGCAGCA 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 CCATTTTTCGATGTTGCATACCAGGGCTTTGCTAGTGGAAGCCTTGATGAAGATGCAGCA 1004
Query 1043 TCTGTGAGATTATTTGCTGAGCGGGGAATGGAGTTTTTTGTTGCTCAGTCATATAGTAAA 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 TCTGTGAGATTATTTGCTGAGCGGGGAATGGAGTTTTTTGTTGCTCAGTCATATAGTAAA 1064
Query 1103 AATTTAGGT-TTGTATGCAGAAAGAATTGGGGCAATCAATGTCGTGTGCTCCTCAGCTGA 1161
||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1065 AATTTAGGTCTT-TATGCAGAAAGAATTGGGGCAATCAATGTTGTGTGCTCATCAGCTGA 1123
Query 1162 TGCTGCTACAAGGGTCAAGAGCCAGTTGAAAAGGATTGCTCGGCCTATGTACTCGAATCC 1221
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1124 TGCTGCTACAAGGGTCAAGAGCCAATTGAAAAGGATTGCTCGGCCTATGTACTCGAACCC 1183
Query 1222 ACCAGTTCATGGGGCGAGAATCGTGGCCAATGTAGTGGGTGATGTAACTATGTTCAGTGA 1281
||||||||||||||||||||| ||||| ||||| || ||||||| ||| |||||||||||
Sbjct 1184 ACCAGTTCATGGGGCGAGAATTGTGGCAAATGTTGTTGGTGATGCAACCATGTTCAGTGA 1243
Query 1282 ATGGAAAGCAGAGATGGAAATGATGGCAGGAAGAATAAAGACGGTTAGACAAGAGCTGTA 1341
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1244 ATGGAAAGCAGAGATGGAAATGATGGCAGGAAGAATAAAGACGGTGAGACAAGAGTTGTA 1303
Query 1342 TGATAGCCTCGTTTCAAAAGACAAGAGCGGGAAGGACTGGTCCTTCATTCTGAAGCAAAT 1401
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 TGATAGCCTTGTTTCAAAAGACAAGAGCGGGAAGGACTGGTCCTTCATTCTGAAGCAAAT 1363
Query 1402 TGGCATGTTCTCTTTCACCGGCCTAAACAAAGCTCAGAGCGATAACATGACGGACAAATG 1461
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1364 TGGCATGTTCTCTTTCACCGGGCTAAACAAAGCTCAGAGCGATAACATGACGGACAAATG 1423
Query 1462 GCATGTGTATATGACTAAAGACGGGAGGATATCATTGGCCGGATTATCTCTGGCCAAATG 1521
||||||||| |||||||||||||||||||||||| |||| ||||| |||||||| |||||
Sbjct 1424 GCATGTGTACATGACTAAAGACGGGAGGATATCACTGGCTGGATTGTCTCTGGCGAAATG 1483
Query 1522 CGAGTATCTTGCTGATGCGATCATCGACTCATACCATAACG 1562
||||| ||||||||||||||||||||||||||||||||||
Sbjct 1484 TGAGTACCTTGCTGATGCGATCATCGACTCATACCATAACG 1524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64220153070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5