BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32000.2
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491535 jgi|Araly1|491535|fgenesh2_kg.7__968__AT4G32000.1 2015 0.0
Ahg481379 jgi|Araly1|481379|fgenesh2_kg.4__439__AT2G25220.1 889 0.0
Ahg924187 jgi|Araly1|924187|scaffold_105468.1 76.8 4e-13
> Ahg491535 jgi|Araly1|491535|fgenesh2_kg.7__968__AT4G32000.1
Length=1255
Score = 2015 bits (1091), Expect = 0.0
Identities = 1206/1261 (96%), Gaps = 9/1261 (1%)
Strand=Plus/Plus
Query 31 ATGGGAAAGAttcttcatcttcttcttcttcttcttAAGGTCTCTGTTCTTGAATTCATC 90
||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGAGAAAGATTCTTCA---TCTTCTTCTTATTCTTAAGGTCTCTGTTCTTGAATTCATC 57
Query 91 ATTAGTGTTTCTGCTTTTACTTCACCTGCTTCACAGCCTTCTCTTTCTCCTGTTTACACT 150
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 58 ATTAGTGTTTCTGCTTTTACCTCACCTGCTTCACAGCCTTCTCTTTCTCCTGTTTACACT 117
Query 151 TCCATGGCTTCCTTTTCTCCAGGGATCCACATGGGCAAAGGCCAAGAACACAAGTTAGAT 210
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 118 TCCATGGCTTCCTTCTCTCCAGGGATCCAAATGGGTAAAGGCCAAGAACACAAGTTAGAT 177
Query 211 GCACACAAGAAACTTCTAATCGCTCTCATAATCACCTCATCTTCTCTAGGACTAATACTT 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GCACACAAGAAACTTCTAATCGCTCTCATAATCACCTCATCTTCTCTAGGACTAATACTT 237
Query 271 GTATCTTGTTTATGCTTTTGGGTTTATTGGTCTAAGAAATCTCCCAAAAACACCAAGAAC 330
||| |||||||||||||||||||||||||||||||||||||||| | |||| |||||||
Sbjct 238 CTATTTTGTTTATGCTTTTGGGTTTATTGGTCTAAGAAATCTCCCGAGAACAACAAGAAC 297
Query 331 TCAGAAGGTGAGAGTAGGATTTCATTATCCAAGAAGGGCTTTGTGCAGTCCTTCGATTAC 390
|| |||||||||| |||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 298 TC---AGGTGAGAGTGGGATATCATTATCCAAGAAGGGTTTTGTGCAGTCCTTCGATTAC 354
Query 391 AAGACACTAGAGAAAGCAACAGGCGGTTTCAAAGACGGTAATCTTATAGGACGAGGCGGG 450
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 355 AAGACACTAGAGAAAGCAACAGGCGGTTTCAAAGACGGTAATCTTGTAGGACGAGGCGGA 414
Query 451 TTCGGAGATGTTTACAAGGCCTGTTTAGGCAAC---AACACTCTAGCAGCAGTCAAAAAG 507
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 415 TTCGGAGATGTTTACAAGGCCTGTTTAGGCAACAAAAACACTCTAGCAGCAGTCAAAAAG 474
Query 508 ATCGAAAACGTTAGTCAAGAAGCAAAACGAGAATTTCAGAATGAAGTTGATTTGTTGAGC 567
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 475 ATCGAAAACGTTAGTCAAGAAGCAAAACGAGAATTTCAGAACGAAGTTGATTTGTTGAGC 534
Query 568 AAGATTCACCACCCGAACATCATCTCATTGTTTGGATATGGAAATGAACTCAGTTCGAGT 627
|||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||
Sbjct 535 AAGATTCACCACCCGAACATAATCTCATTGTTTGGATATGGAAATGAAATCAGCTCGAGT 594
Query 628 TTTATCGTCTACGAGCTGATGGAAAGCGGATCATTGGATACACAGTTACACGGACCTTCT 687
||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||
Sbjct 595 TTTATCGTCTACGAGCTGATGGAAAATGGATCCTTGGATGCACAGTTACACGGACCTTCT 654
Query 688 CGGGGATCGGCTTTAACATGGCACATGCGGATGAAGATTGCTCTTGATACAGCAAGAGCT 747
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CGGGGATCGGCTTTAACGTGGCACATGCGGATGAAGATTGCTCTTGATACAGCAAGAGCT 714
Query 748 GTTGAGTATCTCCACGAGCGTTGTCGTCCTCCGGTTATCCACAGAGATCTTAAATCGTCA 807
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 715 GTTGAGTATCTCCACGAGCGTTGTCGTCCTCCGGTTATCCACAGAGATATTAAGTCGTCA 774
Query 808 AATATTCTCCTTGATTCTTCCTTCAACGCCAAGATTTCGGATTTTGGTCTTGCGGTAATG 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 AATATTCTCCTTGATTCTTCCTTCAACGCCAAGATTTCGGATTTTGGTCTTGCGGTAATG 834
Query 868 GTGGGGGCTCACGGCAAAAACAACATTAAACTATCAGGAACACTTGGTTATGTTGCTCCA 927
|||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 835 GTGGGGACTCACGGCAAGAACAACATTAAACTATCAGGGACACTTGGTTATGTTGCTCCA 894
Query 928 GAATATCTCCTAGATGGAAAATTGACGGATAAGAGTGATGTTTATGCGTTTGGTGTGGTT 987
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 895 GAATATCTACTAGATGGAAAATTGACCGATAAGAGTGATGTTTACGCGTTTGGGGTGGTT 954
Query 988 TTACTTGAACTCTTGTTAGGAAGACGGCCGGTTGAGAAATTGAGTTCGGTTCAGTGTCAA 1047
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 955 CTACTTGAACTCTTGCTAGGAAGACGGCCGGTTGAGAAATTGAGTTCGGTTCAGTGCCAA 1014
Query 1048 TCTCTTGTCACTTGGGCAATGCCCCAACTTACGGATAGATCAAAGCTTCCGAAAATCGTG 1107
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1015 TCTCTTGTCACTTGGGCAATGCCTCAACTTACGGATAGATCAAAGCTTCCAAAAATCGTG 1074
Query 1108 GATCCGGTTATCAAAGATACAATGGATCATAAGCACTTATACCAGGTGGCAGCCGTGGCA 1167
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1075 GATCCGGTTATCAAAGATACAATGGATCATAAGCACTTATACCAGGTAGCAGCGGTGGCA 1134
Query 1168 GTGCTTTGTGTACAACCAGAACCGAGTTATCGACCGTTGATAACCGATGTTCTTCACTCA 1227
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 GTGCTTTGCGTACAACCAGAACCGAGTTATCGACCGTTGATAACCGATGTTCTTCACTCA 1194
Query 1228 CTAGTTCCATTGGTTCCGGTAGAGCTAGGAGGGACTCTCCGGTTAATACCATCATCGTCT 1287
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1195 CTTGTTCCGTTGGTTCCGGTAGAGCTAGGAGGGACTCTCCGGTTAATACCATCGTCTTCT 1254
Query 1288 T 1288
|
Sbjct 1255 T 1255
> Ahg481379 jgi|Araly1|481379|fgenesh2_kg.4__439__AT2G25220.1
Length=1302
Score = 889 bits (481), Expect = 0.0
Identities = 787/932 (84%), Gaps = 31/932 (3%)
Strand=Plus/Plus
Query 359 CCAAGAAGGGCTT-TGTGCAGTCCTTCGATTA-CAAGACACTAGAGAAAGCAACAGGCGG 416
|||| ||||| || ||||||| ||||| || ||| || || |||||||||||||||||
Sbjct 230 CCAACAAGGG-TTACGTGCAGTTTTTCGA-TATCAAAACGCTCGAGAAAGCAACAGGCGG 287
Query 417 TTTCAAAGACGGTAATCTTATAGGACGAGGCGGGTTCGG-AGATGTTTACAAGGCCTGTT 475
||| |||||| ||| | | || |||| |||||| ||||| | ||||||||||| ||||
Sbjct 288 TTTTAAAGACAGTAGTGTAATCGGACAAGGCGGTTTCGGTTG-CGTTTACAAGGCTTGTT 346
Query 476 TAGGCAACAACACTCT---AGCAGCAG-TCAAAAAGATCGAAAACGTTAGTCAAGAAGCA 531
| || |||||| | | |||||| | |||| ||||||||||||||||| |||||||||
Sbjct 347 T-GG--ACAACAATGTGAAAGCAGC-GATCAAGAAGATCGAAAACGTTAGCCAAGAAGCA 402
Query 532 AAACGAGAATTTCAGAATGAAGTTGATTTGTTGAGCAAGATTCACCACCCGAACATCATC 591
|||||||||||||||||||||||||| |||||||||||||| || ||||||||| | ||
Sbjct 403 AAACGAGAATTTCAGAATGAAGTTGACTTGTTGAGCAAGATCCATCACCCGAACGTTATT 462
Query 592 TCATTGTTTGGATATGGAAATGAACTCAGTTCGAGTTTTATCGTCTACGAGCTGATGGA- 650
|||||||| || | | || ||| ||| |||||||| ||||| || ||||| |||||
Sbjct 463 TCATTGTTGGGCTCCGCAAGCGAAATCAACTCGAGTTTCATCGTTTATGAGCTTATGGAG 522
Query 651 AAGCGGATCATTGGAT-ACACAGTTACACGGACCTTCTCGGGGATCGGCTTTAACATGGC 709
|| |||||||| ||| | ||||||||| || |||||||| ||||| ||| |||||||||
Sbjct 523 AA-AGGATCATTAGATGA-ACAGTTACATGGGCCTTCTCGTGGATCAGCTCTAACATGGC 580
Query 710 ACATGCGGATGAAGATTGCTCTTGATACAGCAAGAGCTGTTGAGTATCTCCACGAGCGTT 769
||||||| ||||||||||||||||||||||| |||| | ||||||||||| |||| ||
Sbjct 581 ACATGCGTATGAAGATTGCTCTTGATACAGCTAGAGGACTAGAGTATCTCCATGAGCATT 640
Query 770 GTCGTCCTCCGGTTATCCACAGAGATCTT-AAATCGTCAAATATTCTCCTTGATTCTTCC 828
||| ||| || ||||||||||| ||| || ||||| || |||||||| ||||||||||||
Sbjct 641 GTCATCCACCAGTTATCCACAGGGAT-TTGAAATCTTCGAATATTCTTCTTGATTCTTCC 699
Query 829 TTCAACGCCAAGATTTCGGATTTTGGTCTTGCGGTAAT-GGTGGGGGCTCACGGCAAAAA 887
||||| ||||||||||| ||||| |||||||| || || | | | | || ||||| ||
Sbjct 700 TTCAATGCCAAGATTTCAGATTTCGGTCTTGCTGT-ATCGCTTGATGAGCATGGCAAGAA 758
Query 888 CAACATTAAACTATCAGGAACACTTGGTTATGTTGCTCCAGAATATCTCC-T-A-GATGG 944
||||||||||||||| || || |||||||||||||| || |||||||||| | | ||||
Sbjct 759 CAACATTAAACTATCTGGTACGCTTGGTTATGTTGCCCCGGAATATCTCCTTGACCATGG 818
Query 945 AAAATTGACGGATAAGAGTGATGTTTATGCGTTTGGTGTGGTTTTACTTGAACTCTTGTT 1004
||| ||||||||||||||||||||||||| ||||| |||||| | ||||||||||||||
Sbjct 819 GAAACTGACGGATAAGAGTGATGTTTATGCATTTGGAGTGGTTCTGCTTGAACTCTTGTT 878
Query 1005 AGGAAGACGGCCGGTTGAGAAATTGAGTTCGGTTCAGTGTCAATCTCTTGTCACTTGGGC 1064
|| |||||||||||||||||||||| | | ||| || ||||||||||| ||||||||
Sbjct 879 GGGTAGACGGCCGGTTGAGAAATTGACACCAGCTCAATGCCAATCTCTTGTGACTTGGGC 938
Query 1065 AATGCCCCAACTTACGGATAGATCAAAGCTTCCGAAA-ATCGTGGATCCGGTTATCAAAG 1123
|||||| |||||||| |||||||| |||||||| ||| || |||||| ||||||| ||||
Sbjct 939 AATGCCACAACTTACCGATAGATCCAAGCTTCC-AAACATTGTGGATGCGGTTATAAAAG 997
Query 1124 ATACAATGGATCAT-AAGCACTTATACCAGGTGGCAGCCGTGGCAGTGCTT-TGTGTACA 1181
|||||||||||| | ||||||||||||||||| |||||| |||| ||| || || || ||
Sbjct 998 ATACAATGGATC-TCAAGCACTTATACCAGGTAGCAGCCATGGCTGTG-TTGTGCGTGCA 1055
Query 1182 ACCAGAACCGAGTTATCGACCGTTGATAACCGATGTTCTTCACTCACTAGTTCCATTGGT 1241
|||||||||||||| || ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1056 GCCAGAACCGAGTTACCGGCCGTTAATAACCGATGTTCTTCACTCACTTGTTCCATTGGT 1115
Query 1242 TCCGGTAGAGCTAGGAGGGACTCTCCGGTTAA 1273
||||||||||||||||||||||||||||||||
Sbjct 1116 TCCGGTAGAGCTAGGAGGGACTCTCCGGTTAA 1147
> Ahg924187 jgi|Araly1|924187|scaffold_105468.1
Length=250
Score = 76.8 bits (41), Expect = 4e-13
Identities = 43/44 (98%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 699 TTTAACATGGCACATGCGGATGAAGATTGCTCTTGATACAGCAA 742
|||||||||||||||||||||||||||||||||||||||| |||
Sbjct 167 TTTAACATGGCACATGCGGATGAAGATTGCTCTTGATACAACAA 210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52412177120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5