BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32010.1
Length=3468
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944768 jgi|Araly1|944768|scaffold_700997.1 3978 0.0
> Ahg944768 jgi|Araly1|944768|scaffold_700997.1
Length=2399
Score = 3978 bits (2154), Expect = 0.0
Identities = 2320/2398 (97%), Gaps = 19/2398 (1%)
Strand=Plus/Plus
Query 650 AGCCGCTCAATTGGTCAATTATGGAGTCAATAAAGGTTTGCATGAACGCACTGTGCGGAG 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGCCGCTCAATTGGTCAATTATGGAGTCAATAAAGGTTTGCATGAACGCACTGTGCGGAG 60
Query 710 CGGCCTCTACGTCGGGCGAGTGGAAAAAAGGCTGGCCTATGCGATCCGGTGATTTAGCTT 769
| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 CAGCGTCTACGTCGGGTGAGTGGAAAAAAGGCTGGCCTATGCGATCCGGTGATTTAGCCT 120
Query 770 CTCTCTGCGATAAGTGTGGGTGTGCATACGAGCAATCCATATTCTGTGAAGTGTTCCATG 829
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 121 CTCTCTGCGATAAGTGTGGGTCTGCATACGAGCAATCCATTTTCTGTGAAGTGTTCCATG 180
Query 830 CCAAGGAATCTGGTTGGAGAGAGTGTAATTCATGTGACAAGCGTCTTCACTGTGGATGCA 889
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCGAGGAATCTGGTTGGAGAGAGTGTAATTCATGTGACAAGCGTCTTCACTGTGGATGCA 240
Query 890 TTGCTTCTAGATTTATGATGGAGCTTCTAGAGAATGGTGGTGTTACCTGTATAAGTTGCG 949
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 TTGCTTCTAGATTTATGATGGAGCTTCTAGAGAATGGCGGTGTTACCTGTATAAGTTGCG 300
Query 950 CCAAGAAATCCGGACTAATTTCTATGAATGTGAGCCATGA-ATCTAACGGTAAGGACTTC 1008
||||||||||||||||| |||||||||||||||||||| | ||||||||||| |||||||
Sbjct 301 CCAAGAAATCCGGACTATTTTCTATGAATGTGAGCCAT-ATATCTAACGGTAGGGACTTC 359
Query 1009 CCCTCATTTGCTTCAGCAGAGCATGTAGGCAGTGTTCTTGAGAGGACAAATCTCAAGCAC 1068
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 360 CCCTCATTTGCTTCAGCAGAGCATGTAGGCAGTGTTCTCGAGAGGACAAATCTCAAGCAC 419
Query 1069 TTGCTTCACTTTCAAAGAATCGACCCCACTCATTCTTCTCTTCAAATGAAACAAGAAGAA 1128
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 420 TTGCTTCACTTTCAAAGAATCGACCCCACTCAATCTTCTCTTCAAATGAAACAAGAAGAA 479
Query 1129 TCGCTGCTTCCTTCCAGCCTAGATGCTCTTAGACACAAAACTGAAAGGAAAGAATT---- 1184
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCGCTGCTTCCTTCCAGACTAGATGCTCTTAGACACAAAACTGAAAGGAAAGAATTGCAG 539
Query 1185 G-----TCTGCACAGCCAAACTTGAGCATTTCACTTGGACCTACGCTTATGACAAGCCCA 1239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GAATTATCTGCACAGCCAAACTTGAGCATTTCACTTGGACCTACGCTTATGACAAGCCCA 599
Query 1240 TTTCATGATGCTGCTGTTGATGACAGAAGTAAGACTAATTCGATTTTCCAACTGGCCCCT 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTTCATGATGCTGCTGTTGATGACAGAAGTAAGACTAATTCGATTTTCCAACTGGCCCCT 659
Query 1300 CGGTCCAGGCAGCTGCTTCCAAAACCTGCAAATTCAGCTCCCATTGCTGCTGGCATGGAG 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CGGTCCAGGCAGCTGCTTCCAAAACCTGCAAATTCAGCTCCCATTGCTGCTGGCATGGAG 719
Query 1360 CCTAGTGGGAGCCTGGTGTCACAGATTCATGTCGCTCGGCCTCCTCCAGAAGGTCGCGGG 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CCTAGTGGGAGCCTGGTGTCACAGATTCATGTCGCTCGGCCTCCTCCAGAAGGTCGCGGG 779
Query 1420 AAGACCCAATTGCTTCCCCGTTACTGGCCTAGGATTACTGACCAAGAGCTGCTGCAATTA 1479
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 780 AAGACCCAATTGCTTCCCCGTTATTGGCCTAGGATTACTGACCAAGAGCTGCTGCAATTA 839
Query 1480 TCTGGACAGTATCCTCATCTCTCAAATTCCAAAATTATACCACTCTTTGAAAAAGTTCTG 1539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TCTGGACAGTATCCTCATCTCTCAAATTCCAAAATTATACCACTCTTTGAAAAAGTTCTG 899
Query 1540 AGTGCGAGCGATGCGGGTCGTATTGGTCGACTGGTTCTTCCGAAAGCATGTGCAGAGGCA 1599
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGCGCAAGCGATGCGGGTCGTATTGGTCGACTGGTTCTTCCGAAAGCATGTGCAGAGGCA 959
Query 1600 TATTTCCCCCCTATATCTCTACCCGAGGGTCTCCCGTTAAAGATACAAGACATAAAAGGG 1659
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TATTTCCCCCCTATCTCTCTACCCGAGGGTCTCCCGTTAAAGATACAAGACATAAAAGGG 1019
Query 1660 AAAGAATGGGTGTTCCAGTTCAGGTTTTGGCCTAATAATAACAGCAGGATGTACGTTTTG 1719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AAAGAATGGGTGTTCCAGTTCAGGTTTTGGCCTAATAATAACAGCAGGATGTACGTTTTG 1079
Query 1720 GAGGGTGTGACTCCTTGCATACAGTCCATGCAGTTGCAAGCTGGTGACACTGTAACATTC 1779
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1080 GAGGGTGTGACTCCTTGCATACAGTCCATGCAGTTGCAAGCTGGTGACACTGTTACATTC 1139
Query 1780 AGCCGTACAGAACCTGAAGGAAAACTCGTAATGGGATACCGTAAAGCGACGAACTCTACA 1839
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1140 AGCCGTACAGAACCTGAAGGAAAACTCGTAATGGGATACCGTAAAGCAACAAACTCTACA 1199
Query 1840 GCGACACAGATGTTCAAGGGAAGCAGTGAACCCAATCTGAACATGTTTTCCAACAGCTTG 1899
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1200 GCGACACAGATGTTCAAGGGAAGCAGTGAACCCAATCTAAACATGTTTTCCAACAGCTTG 1259
Query 1900 AATCCGGGATGTGGTGACATCAATTGGTCTAAACTAGAGAAGTCTGAGGACATGGCAAAG 1959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AATCCGGGATGTGGTGACATCAATTGGTCTAAACTAGAGAAGTCTGAGGACATGGCAAAG 1319
Query 1960 GATAACTTATTTCTTCAGTCGTCCTTAACTTCTGCTAGGAAACGGGTTCGGAACATTGGG 2019
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1320 GATAACTTATTTCTTCAGTCGTCCCTAACTTCTGCTAGGAAACGGGTTCGGAACATTGGG 1379
Query 2020 ACTAAGAGCAAGCGTCTGCTCATTGATAGCGTAGATGTTCTGGAACTGAAAATAACTTGG 2079
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TCTAAGAGCAAGCGTCTGCTCATTGATAGCGTAGATGTTCTGGAACTGAAAATAACTTGG 1439
Query 2080 GAGGAGGCACAGGAGCTGTTGCGGCCTCCCCAATCCACCAAACCCAGCATCTTTACGCTG 2139
|||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1440 GAGGAGGCACAGGAACTGTTGCGGCCGCCCCAATCCGCCAAACCCAGCATCTTTACGCTG 1499
Query 2140 GAAAATCAAGATTTTGAAGAATATGACGAACCACCAGTTTTCGGGAAGAGGACCCTTTTT 2199
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 GAAAATCAGGATTTTGAAGAATATGACGAACCACCAGTTTTCGGGAAGAGGACCCTTTTT 1559
Query 2200 GTCTCACGTCAAACAGGGGAACAAGAGCAATGGGTGCAGTGTGATGCTTGTGGGAAATGG 2259
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 GTGTCACGTCAAACAGGGGAACAAGAGCAATGGGTGCAGTGTGATGCTTGTGGGAAATGG 1619
Query 2260 CGACAGCTGCCGGTGGATATTCTTCTTCCACCAAAGTGGTCGTGCTCTGATAATCTCTTG 2319
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 CGACGGCTGCCTGTGGATATTCTTCTTCCACCAAAGTGGTCGTGCTCTGATAATCTCTTG 1679
Query 2320 GATCCTGGCAGGTCTTCATGTTCCGCACCTGATGAACTCTCTCCAAGAGAACAGGATACA 2379
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1680 GATCCTGGCAGGTCTTCATGTTCCGCACCTGATGAGCTCTCTCCTAGAGAACAGGATACA 1739
Query 2380 CTTGTCCGGCAGAGCAAAGAGTTCAAAAGGAGGAGACTGGCATCATCAAACGAAAAGCTA 2439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 CTTGTCCGGCAGAGCAAAGAGTTCAAAAGGAGGAGACTGGCATCATCAAACGAAAAGCTA 1799
Query 2440 AACCAGTCGCAGGATGCATCTGCTCTGAATAGTTTAGGAAATGCAGGCATCACCACAACC 2499
|||||||||||||| |||||||||||| ||| |||||||||||||||||||||||| |||
Sbjct 1800 AACCAGTCGCAGGAGGCATCTGCTCTGGATACTTTAGGAAATGCAGGCATCACCACTACC 1859
Query 2500 GGTGAACAGGGGGAAATCACGGTTGCAGCCACGACCAAGCATCCAAGACACCGGGCAGGG 2559
|||||||||| |||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 1860 GGTGAACAGGAGGAAATCACGGTGGCAGCCACTACCAAGCACCCAAGACACCGGGCAGGG 1919
Query 2560 TGTTCGTGCATCGTCTGCAGCCAACCACCGAGCGGAAAAGGCAAACACAAGCCGTCATGC 2619
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1920 TGTTCGTGCATCGTCTGCAGCCAACCACCGAGTGGAAAAGGCAAACACAAGCCGTCATGC 1979
Query 2620 ACTTGCACTGTGTGCGAGGCAGTGAAGAGACGATTCAGGACGCTCATGCTGCGGAAGCGG 2679
||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1980 ACTTGTACTGTGTGCGAGGCAGTGAAGAGAAGATTCAGAACGCTCATGCTGCGGAAGCGG 2039
Query 2680 AACAAAGGAGAGGCAGGACAGGCAAGCCAGCAGGCGCAGTCACAGTCAGAGTGCAGGGAC 2739
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2040 AACAGGGGAGAGGCGGGACAGGCAAGCCAGCAGGCGCAGTCACAGTCAGAGTGCAGGGAC 2099
Query 2740 GAGACAGAAGTGGAGAGCATTCCAGCGGTTGAACTAGCCGCAGGGGAAAACATCGACTTG 2799
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 2100 GAGACAGAAGTGGAGAGCATTCCAGCGATTGAACCAGCCGCAGGGGAAAACATCGACTTG 2159
Query 2800 AACTCAGACCCGGGGGCTTCCCGAGTAAGCATGATGAGGCTTCTCCAAGCTGCAGCGTTT 2859
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2160 AACTCAGATCCGGGGGCTTCCCGAGTAAGCATGATGAGGCTTCTCCAAGCTGCAGCTTTT 2219
Query 2860 CCTCTGGAAGCATATCTGAAACAAAAGGCTATTTCCAATACAGCAGGAGAACAGCAAAGC 2919
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 2220 CCTCTGGAAGCATATCTGAAACAAAAGGCTATTTCCAATACGGGAGGAGAACAGCAAAGC 2279
Query 2920 AGTGATATGGTCAGCACAGAACACGGTTCGTCCTCAGCCGCACAAGAA-ACTGAGAAAGA 2978
||||||||||| ||||| || || |||||||||||||||||||||||| | |||||||||
Sbjct 2280 AGTGATATGGTAAGCACGGAGCAGGGTTCGTCCTCAGCCGCACAAGAACA-TGAGAAAGA 2338
Query 2979 ------CACAACAAATGGAGCTCATGATCCTGTGAACTAAACAGCTTTGGAATTCTCC 3030
||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2339 GAAAGACACAAGAAATGGAGCTCATGATCCTGTGAACTAAACAGCTTTGGAATCCTCC 2396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130956108693
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5