BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G32010.1 Length=3468 Score E Sequences producing significant alignments: (Bits) Value Ahg944768 jgi|Araly1|944768|scaffold_700997.1 3978 0.0 > Ahg944768 jgi|Araly1|944768|scaffold_700997.1 Length=2399 Score = 3978 bits (2154), Expect = 0.0 Identities = 2320/2398 (97%), Gaps = 19/2398 (1%) Strand=Plus/Plus Query 650 AGCCGCTCAATTGGTCAATTATGGAGTCAATAAAGGTTTGCATGAACGCACTGTGCGGAG 709 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGCCGCTCAATTGGTCAATTATGGAGTCAATAAAGGTTTGCATGAACGCACTGTGCGGAG 60 Query 710 CGGCCTCTACGTCGGGCGAGTGGAAAAAAGGCTGGCCTATGCGATCCGGTGATTTAGCTT 769 | || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 61 CAGCGTCTACGTCGGGTGAGTGGAAAAAAGGCTGGCCTATGCGATCCGGTGATTTAGCCT 120 Query 770 CTCTCTGCGATAAGTGTGGGTGTGCATACGAGCAATCCATATTCTGTGAAGTGTTCCATG 829 ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct 121 CTCTCTGCGATAAGTGTGGGTCTGCATACGAGCAATCCATTTTCTGTGAAGTGTTCCATG 180 Query 830 CCAAGGAATCTGGTTGGAGAGAGTGTAATTCATGTGACAAGCGTCTTCACTGTGGATGCA 889 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CCGAGGAATCTGGTTGGAGAGAGTGTAATTCATGTGACAAGCGTCTTCACTGTGGATGCA 240 Query 890 TTGCTTCTAGATTTATGATGGAGCTTCTAGAGAATGGTGGTGTTACCTGTATAAGTTGCG 949 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 241 TTGCTTCTAGATTTATGATGGAGCTTCTAGAGAATGGCGGTGTTACCTGTATAAGTTGCG 300 Query 950 CCAAGAAATCCGGACTAATTTCTATGAATGTGAGCCATGA-ATCTAACGGTAAGGACTTC 1008 ||||||||||||||||| |||||||||||||||||||| | ||||||||||| ||||||| Sbjct 301 CCAAGAAATCCGGACTATTTTCTATGAATGTGAGCCAT-ATATCTAACGGTAGGGACTTC 359 Query 1009 CCCTCATTTGCTTCAGCAGAGCATGTAGGCAGTGTTCTTGAGAGGACAAATCTCAAGCAC 1068 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 360 CCCTCATTTGCTTCAGCAGAGCATGTAGGCAGTGTTCTCGAGAGGACAAATCTCAAGCAC 419 Query 1069 TTGCTTCACTTTCAAAGAATCGACCCCACTCATTCTTCTCTTCAAATGAAACAAGAAGAA 1128 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 420 TTGCTTCACTTTCAAAGAATCGACCCCACTCAATCTTCTCTTCAAATGAAACAAGAAGAA 479 Query 1129 TCGCTGCTTCCTTCCAGCCTAGATGCTCTTAGACACAAAACTGAAAGGAAAGAATT---- 1184 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 480 TCGCTGCTTCCTTCCAGACTAGATGCTCTTAGACACAAAACTGAAAGGAAAGAATTGCAG 539 Query 1185 G-----TCTGCACAGCCAAACTTGAGCATTTCACTTGGACCTACGCTTATGACAAGCCCA 1239 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 GAATTATCTGCACAGCCAAACTTGAGCATTTCACTTGGACCTACGCTTATGACAAGCCCA 599 Query 1240 TTTCATGATGCTGCTGTTGATGACAGAAGTAAGACTAATTCGATTTTCCAACTGGCCCCT 1299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 TTTCATGATGCTGCTGTTGATGACAGAAGTAAGACTAATTCGATTTTCCAACTGGCCCCT 659 Query 1300 CGGTCCAGGCAGCTGCTTCCAAAACCTGCAAATTCAGCTCCCATTGCTGCTGGCATGGAG 1359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 CGGTCCAGGCAGCTGCTTCCAAAACCTGCAAATTCAGCTCCCATTGCTGCTGGCATGGAG 719 Query 1360 CCTAGTGGGAGCCTGGTGTCACAGATTCATGTCGCTCGGCCTCCTCCAGAAGGTCGCGGG 1419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 CCTAGTGGGAGCCTGGTGTCACAGATTCATGTCGCTCGGCCTCCTCCAGAAGGTCGCGGG 779 Query 1420 AAGACCCAATTGCTTCCCCGTTACTGGCCTAGGATTACTGACCAAGAGCTGCTGCAATTA 1479 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 780 AAGACCCAATTGCTTCCCCGTTATTGGCCTAGGATTACTGACCAAGAGCTGCTGCAATTA 839 Query 1480 TCTGGACAGTATCCTCATCTCTCAAATTCCAAAATTATACCACTCTTTGAAAAAGTTCTG 1539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 TCTGGACAGTATCCTCATCTCTCAAATTCCAAAATTATACCACTCTTTGAAAAAGTTCTG 899 Query 1540 AGTGCGAGCGATGCGGGTCGTATTGGTCGACTGGTTCTTCCGAAAGCATGTGCAGAGGCA 1599 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 AGCGCAAGCGATGCGGGTCGTATTGGTCGACTGGTTCTTCCGAAAGCATGTGCAGAGGCA 959 Query 1600 TATTTCCCCCCTATATCTCTACCCGAGGGTCTCCCGTTAAAGATACAAGACATAAAAGGG 1659 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 TATTTCCCCCCTATCTCTCTACCCGAGGGTCTCCCGTTAAAGATACAAGACATAAAAGGG 1019 Query 1660 AAAGAATGGGTGTTCCAGTTCAGGTTTTGGCCTAATAATAACAGCAGGATGTACGTTTTG 1719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 AAAGAATGGGTGTTCCAGTTCAGGTTTTGGCCTAATAATAACAGCAGGATGTACGTTTTG 1079 Query 1720 GAGGGTGTGACTCCTTGCATACAGTCCATGCAGTTGCAAGCTGGTGACACTGTAACATTC 1779 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1080 GAGGGTGTGACTCCTTGCATACAGTCCATGCAGTTGCAAGCTGGTGACACTGTTACATTC 1139 Query 1780 AGCCGTACAGAACCTGAAGGAAAACTCGTAATGGGATACCGTAAAGCGACGAACTCTACA 1839 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 1140 AGCCGTACAGAACCTGAAGGAAAACTCGTAATGGGATACCGTAAAGCAACAAACTCTACA 1199 Query 1840 GCGACACAGATGTTCAAGGGAAGCAGTGAACCCAATCTGAACATGTTTTCCAACAGCTTG 1899 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1200 GCGACACAGATGTTCAAGGGAAGCAGTGAACCCAATCTAAACATGTTTTCCAACAGCTTG 1259 Query 1900 AATCCGGGATGTGGTGACATCAATTGGTCTAAACTAGAGAAGTCTGAGGACATGGCAAAG 1959 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1260 AATCCGGGATGTGGTGACATCAATTGGTCTAAACTAGAGAAGTCTGAGGACATGGCAAAG 1319 Query 1960 GATAACTTATTTCTTCAGTCGTCCTTAACTTCTGCTAGGAAACGGGTTCGGAACATTGGG 2019 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1320 GATAACTTATTTCTTCAGTCGTCCCTAACTTCTGCTAGGAAACGGGTTCGGAACATTGGG 1379 Query 2020 ACTAAGAGCAAGCGTCTGCTCATTGATAGCGTAGATGTTCTGGAACTGAAAATAACTTGG 2079 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1380 TCTAAGAGCAAGCGTCTGCTCATTGATAGCGTAGATGTTCTGGAACTGAAAATAACTTGG 1439 Query 2080 GAGGAGGCACAGGAGCTGTTGCGGCCTCCCCAATCCACCAAACCCAGCATCTTTACGCTG 2139 |||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 1440 GAGGAGGCACAGGAACTGTTGCGGCCGCCCCAATCCGCCAAACCCAGCATCTTTACGCTG 1499 Query 2140 GAAAATCAAGATTTTGAAGAATATGACGAACCACCAGTTTTCGGGAAGAGGACCCTTTTT 2199 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1500 GAAAATCAGGATTTTGAAGAATATGACGAACCACCAGTTTTCGGGAAGAGGACCCTTTTT 1559 Query 2200 GTCTCACGTCAAACAGGGGAACAAGAGCAATGGGTGCAGTGTGATGCTTGTGGGAAATGG 2259 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1560 GTGTCACGTCAAACAGGGGAACAAGAGCAATGGGTGCAGTGTGATGCTTGTGGGAAATGG 1619 Query 2260 CGACAGCTGCCGGTGGATATTCTTCTTCCACCAAAGTGGTCGTGCTCTGATAATCTCTTG 2319 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1620 CGACGGCTGCCTGTGGATATTCTTCTTCCACCAAAGTGGTCGTGCTCTGATAATCTCTTG 1679 Query 2320 GATCCTGGCAGGTCTTCATGTTCCGCACCTGATGAACTCTCTCCAAGAGAACAGGATACA 2379 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 1680 GATCCTGGCAGGTCTTCATGTTCCGCACCTGATGAGCTCTCTCCTAGAGAACAGGATACA 1739 Query 2380 CTTGTCCGGCAGAGCAAAGAGTTCAAAAGGAGGAGACTGGCATCATCAAACGAAAAGCTA 2439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1740 CTTGTCCGGCAGAGCAAAGAGTTCAAAAGGAGGAGACTGGCATCATCAAACGAAAAGCTA 1799 Query 2440 AACCAGTCGCAGGATGCATCTGCTCTGAATAGTTTAGGAAATGCAGGCATCACCACAACC 2499 |||||||||||||| |||||||||||| ||| |||||||||||||||||||||||| ||| Sbjct 1800 AACCAGTCGCAGGAGGCATCTGCTCTGGATACTTTAGGAAATGCAGGCATCACCACTACC 1859 Query 2500 GGTGAACAGGGGGAAATCACGGTTGCAGCCACGACCAAGCATCCAAGACACCGGGCAGGG 2559 |||||||||| |||||||||||| |||||||| |||||||| |||||||||||||||||| Sbjct 1860 GGTGAACAGGAGGAAATCACGGTGGCAGCCACTACCAAGCACCCAAGACACCGGGCAGGG 1919 Query 2560 TGTTCGTGCATCGTCTGCAGCCAACCACCGAGCGGAAAAGGCAAACACAAGCCGTCATGC 2619 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1920 TGTTCGTGCATCGTCTGCAGCCAACCACCGAGTGGAAAAGGCAAACACAAGCCGTCATGC 1979 Query 2620 ACTTGCACTGTGTGCGAGGCAGTGAAGAGACGATTCAGGACGCTCATGCTGCGGAAGCGG 2679 ||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 1980 ACTTGTACTGTGTGCGAGGCAGTGAAGAGAAGATTCAGAACGCTCATGCTGCGGAAGCGG 2039 Query 2680 AACAAAGGAGAGGCAGGACAGGCAAGCCAGCAGGCGCAGTCACAGTCAGAGTGCAGGGAC 2739 |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2040 AACAGGGGAGAGGCGGGACAGGCAAGCCAGCAGGCGCAGTCACAGTCAGAGTGCAGGGAC 2099 Query 2740 GAGACAGAAGTGGAGAGCATTCCAGCGGTTGAACTAGCCGCAGGGGAAAACATCGACTTG 2799 ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 2100 GAGACAGAAGTGGAGAGCATTCCAGCGATTGAACCAGCCGCAGGGGAAAACATCGACTTG 2159 Query 2800 AACTCAGACCCGGGGGCTTCCCGAGTAAGCATGATGAGGCTTCTCCAAGCTGCAGCGTTT 2859 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2160 AACTCAGATCCGGGGGCTTCCCGAGTAAGCATGATGAGGCTTCTCCAAGCTGCAGCTTTT 2219 Query 2860 CCTCTGGAAGCATATCTGAAACAAAAGGCTATTTCCAATACAGCAGGAGAACAGCAAAGC 2919 ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 2220 CCTCTGGAAGCATATCTGAAACAAAAGGCTATTTCCAATACGGGAGGAGAACAGCAAAGC 2279 Query 2920 AGTGATATGGTCAGCACAGAACACGGTTCGTCCTCAGCCGCACAAGAA-ACTGAGAAAGA 2978 ||||||||||| ||||| || || |||||||||||||||||||||||| | ||||||||| Sbjct 2280 AGTGATATGGTAAGCACGGAGCAGGGTTCGTCCTCAGCCGCACAAGAACA-TGAGAAAGA 2338 Query 2979 ------CACAACAAATGGAGCTCATGATCCTGTGAACTAAACAGCTTTGGAATTCTCC 3030 ||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 2339 GAAAGACACAAGAAATGGAGCTCATGATCCTGTGAACTAAACAGCTTTGGAATCCTCC 2396 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 130956108693 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5