BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32020.1
Length=1507
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491533 jgi|Araly1|491533|fgenesh2_kg.7__966__AT4G32020.1 1670 0.0
> Ahg491533 jgi|Araly1|491533|fgenesh2_kg.7__966__AT4G32020.1
Length=1362
Score = 1670 bits (904), Expect = 0.0
Identities = 1210/1345 (90%), Gaps = 71/1345 (5%)
Strand=Plus/Plus
Query 107 ACCAAATCTGCCTTTCTCAATTAGCTATGGGCGTCGCTGTTCTAAATCCCCAGGATTGCT 166
||||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||
Sbjct 44 ACCAAATCTGCCTTTCTCAATTAGCCATGGGCGTCGCCGTTCTAAATCCTCAAGATTGCT 103
Query 167 TGAAAGATCCATTCTCTCACATGAAACAACATCGTAATCCTAGCGCATGTCCCAACAGGC 226
|||||||||| |||||||||||||| || ||||| ||||| |||||||||||||||||||
Sbjct 104 TGAAAGATCCTTTCTCTCACATGAAGCACCATCGCAATCCCAGCGCATGTCCCAACAGGC 163
Query 227 AGAAGAAGACGGTCTCCAACAACCGTACACGCCGGAGTCCTCCTCGTAGTCAATCCTCCA 286
|||||||| |||| |||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 164 AGAAGAAGCCGGTTTCCAACAACCGTACACGCCGGAGTCCTCCTCGTAATCAATCCGCCA 223
Query 287 GATC-T-T-CT--T-CTCCTCCTGTAGCGCCGCCGCTTCCTCCTCCTCGTGCGGCTGTCT 340
|||| | | || | |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 224 GATCTTCTCCTCCTCCTCCTCCTGTAGCGCCGCCGCTTCCTCCTCCTCGTGCGGCCGTCT 283
Query 341 CTGCTTTCGTTCCAAAGGGAACCCTTAAGAAGAGTCTTAGCAATACCGTTGCCGTTAGCC 400
|| ||||| ||||||| |||||| |||||||||||| |||||| ||||| | ||||||||
Sbjct 284 CTTCTTTCATTCCAAAAGGAACCGTTAAGAAGAGTCCTAGCAACACCGTAGTCGTTAGCC 343
Query 401 AGGTGAGAATCCTTAAGCGCGGCGAAGAAATCCCCAAGGAGACTTCAGATCTGGTTGTGG 460
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 344 AGGTGAGAATCCTGAAGCGCGGCGAAGAAATCCCCAAGGAGACTTCAGATCTGGTTGTTG 403
Query 461 AAATGTCAGATCTGGGATCTACTCGTCGGATTGGACCAGATCCGGGTTTGATTCCGGGTC 520
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 404 AAAACTCAGATCTGGGATCTACTCGTCGGATTGGACCAGATCCGGGTTTGATTCCGAGTC 463
Query 521 AGATCCGTTTATCTGGCCGCAAATCGAAATCAGCACCGTTTTACGCCGGTCCTGTGACCA 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 AGATCCGTTTATCTGGCCGCAAATCGAAATCAGCACCGTTTTACGCCGGTCCTGTGACCA 523
Query 581 TGACCTCGCCGCCTCCTAGCGATGTCCCGCTTCCAGC-TTTCTTCACGAAGAAGGCAACA 639
|||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct 524 TGACCTCGCCGCCTCCGAGCGATGTCCCGCTTCCAGCCTTT-TTCACGAAGAAGGCAACC 582
Query 640 AATGATCTCATCAGGATCCTTCGCCTAGACATCGCCTGACGGTGTCTGTCACCGATCAtt 699
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 583 AATGATCTCATCAGGATCCTTCGCCTAGACATCGCCTGACGGTGTCTGTCGCCGATCATT 642
Query 700 tttgattttttAAAAATCTCCGATGATCCAAATGGTTAC-CAAAGTGTTACATTTCCGTA 758
|| |||||| |||| ||||||||||||||| | ||||| ||| |||||||| |||| |
Sbjct 643 TTAGATTTTC-AAAA-TCTCCGATGATCCAACTTGTTACTCAA-GTGTTACAATTCCAAA 699
Query 759 TTACCGATCGTCCGATTCCGCCTGAAAACCGGAGATCTGCAACAAAATATAATCTCCAGA 818
|||| | ||| | | | | | | | || ||| |||||||||||||
Sbjct 700 --ACCG---GA--GAT-C----T-A---C---A-A---G-AA-AAA-TATAATCTCCAGA 733
Query 819 CGATGATGAATCTAGAAGATGAAGAAACACACATCTTCGTTATGAACCGTTTCGAATCTT 878
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 CGATGA--A-TCTAGAAGATGAAGAAACACACATCTTCGTTATGAACCGTTTCGAATCTT 790
Query 879 CCCTTATTTTTTCAAGGGGCAAGATCGAAATATCTTCTTAACAGGTCTTAGTTTCTCTTC 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 CCCTTATTTTTTCAAGGGGCAAGATCGAAATATCTTCTTAACAGGTCTTAGTTTCTCTTC 850
Query 939 TTAGGGTTTAGTGTTTGTGTAGGAGTATTTGTGTATAGA--CTTTTTACTAGTTTTCGTA 996
|||||||||||||||||||||||||||| |||| ||||| ||||| ||||||||||||
Sbjct 851 TTAGGGTTTAGTGTTTGTGTAGGAGTATATGTGCATAGAGACTTTT-ACTAGTTTTCGTT 909
Query 997 TCTTTCTCTGTATCTTCGGGTTTTTAATTTCTGCTTAATCGTCAGGTTCTCTGGGTAAAT 1056
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 910 TCTTTCTCTGTATCTTTGGGTTTTTAATT-CTGCTTAATCGTCAGGTTCTCTGGGTAAAT 968
Query 1057 CATAGGTTGG--CTTT-TGTC------ATTTCGTCTGTGTCTTAAGTGGATTAGTTGGTC 1107
| ||| || | |||| |||| ||||||| ||||||| | ||| |||||| ||||
Sbjct 969 CTTAGTTTCGTACTTTGTGTCTTTGTCATTTCGTTTGTGTCTGA-GTGAATTAGTAGGTC 1027
Query 1108 GTAAGACAAGTTATAGAGATGTGTTTACGGGTAAAGATGAAGCTTAGGTTTTGATGTAAT 1167
|||||||||||||||||||||||| ||| ||||| ||||| | |||||||| ||||||||
Sbjct 1028 GTAAGACAAGTTATAGAGATGTGTCTACTGGTAA-GATGACGTTTAGGTTTCGATGTAAT 1086
Query 1168 CTTCTTCGGTTTTTCAATTCTCTGTATTTCT-CTATCTTTTTAGTTTATCAAGTTTAAGT 1226
|||||||||| || | ||||||||||||||| ||||| || | | ||||||||
Sbjct 1087 CTTCTTCGGTATTGCGATTCTCTGTATTTCTTCTATCCTT--A----A----GTTTAAGT 1136
Query 1227 TTTATTTGGGGTTTCTTCTTCGTTTGGGTATCTTTCTGTTTTTCCTTAAGGTTCTTCGTT 1286
||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||
Sbjct 1137 TTTATTTGGGGTTTCTTCTTCATTTGGGTCTCTTTCTGTTGTTCCTTAAGGTTCTTCGTT 1196
Query 1287 TGTTTCCGTGTCGTCTAGGTTAAGTCAAAGTAAAGAGATGTAATTACTGGTTAGATGAAT 1346
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1197 TGTTTCCGTGTCGTCTAGGTTAAGTCAAAGTAAAGAGATGTATTTACTGGTTAGATGAAG 1256
Query 1347 CTTAAGGTTTCCATGTAA-CCGTTTGTACTACAA-TTCTCTGTACTTCTCTATCTTTAAT 1404
|||||||||||||||||| || || ||||||||| |||||||||||||||||||||||||
Sbjct 1257 CTTAAGGTTTCCATGTAATCC-TT-GTACTACAAATTCTCTGTACTTCTCTATCTTTAAT 1314
Query 1405 ATTATCGAATTTAAGTTTTATCTTT 1429
| |||||||||||||||||||||||
Sbjct 1315 ACTATCGAATTTAAGTTTTATCTTT 1339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56411652845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5