BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32030.1
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944766 jgi|Araly1|944766|scaffold_700995.1 1175 0.0
> Ahg944766 jgi|Araly1|944766|scaffold_700995.1
Length=811
Score = 1175 bits (636), Expect = 0.0
Identities = 757/814 (93%), Gaps = 13/814 (2%)
Strand=Plus/Plus
Query 144 TTTGAGTAGTGTAAGCGTCGATGAAGAAGGTTACATCGTCTAAGATTCCGGCCAAGGATG 203
||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 TTTGATTAGTGTAAGCATCGATGAAGAAGGTTACATCGTCTAAGATTCCGGTCAAGGATG 60
Query 204 ATTGGGTGGCTGTAGCGATAACTGACGACGATTTGGTCGTTGAGCTTCTTTTACGGCTGA 263
|||||||||| || || || ||||||||||||||||| ||||||||||| |||||||| |
Sbjct 61 ATTGGGTGGCGGTGGCTATGACTGACGACGATTTGGTGGTTGAGCTTCTCTTACGGCTCA 120
Query 264 AGCATGCCGGAACGGTAGTGTCGGATAATCCGGCGGTGATTCTCCCTCCGTTGCGGTGGG 323
||||||||||||||||||||||||||||||||||||||| ||| |||||| | |||||||
Sbjct 121 AGCATGCCGGAACGGTAGTGTCGGATAATCCGGCGGTGAATCTGCCTCCGCTACGGTGGG 180
Query 324 GAATCCGTCAACGACGGTCTCGTTCCTCAAGATTTGGTGGCGGCGGCGGCGTTCTCGTTT 383
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 GAATCCGTCAACGACGGTCTCGGTCCTCAAGATTTGGTGGCGGCGGCGGCGTTCTCGTTT 240
Query 384 CCTTGAAGAAAGATGTCGATTCCGTTAGAGCCAGTCCGAAGACTCCTCTCTCGTGGAGCG 443
| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 241 CGTTGAAGAAAGATGTGGATTCCGTTAGAGCCAGTCCGAAGACTCCGCTCTCCTGGAGCG 300
Query 444 GCGGATCTGGAAGTGGTGGCGGCTCTGC-T-T-C-T---CC-T-TCCGCCGATGGATTCG 494
|||||||||||||||| ||||||||||| | | | | || | |||||||||||||||
Sbjct 301 GCGGATCTGGAAGTGGCGGCGGCTCTGCATCTCCTTCCGCCGTAACCGCCGATGGATTCG 360
Query 495 AGGATAACAGTCGCCAAGCTAGCTGCTCTACATCTACAGGATCTGGATCTAAGGTTTTTC 554
| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 361 AAGATACCAGTCGCCAAGCTAGCTGCTCTACATCTACAGGATCCGGATCTAAGGTTTTTC 420
Query 555 CCACAAACGAAATCACCAGTTGTTTCTCCAAGAGATTGAAGAAGAGGAAGTCATCTTTTG 614
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| | |
Sbjct 421 CCACAAACGAAATCACCAGTTCTTTCTCCAAGAGATTGAAGAAAAGGAAGTCATCGTCCG 480
Query 615 AGCTTAAAAATGAAGAGAACTTGAAGTTGAAGGAGAGACTTGACCTTGAAAAGGAGATTG 674
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 AGCTTAAAAATGAAGAGAACTTGAAGTTGAAGGAGAGACTTGACCTTCAAAAGGAGATTG 540
Query 675 CAAGTCTCCGAGCAACATTCGATGAACAAAACCTTAGGAACCAAAAGCTGAAGAGGATTA 734
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 CAAGTCTCCGAGCAACACTCGATGAACAAAACCTTAGGAACCAAAAGTTGAAGAGGATTA 600
Query 735 AGCTTGACTTAAACTCAGGCCGTGTCACAAACAAGAAACCTGTTGATTTGATTCGTAAAT 794
|||||||||||||||| || |||||||| |||||||||||||||||| ||||||||||||
Sbjct 601 AGCTTGACTTAAACTCTGGTCGTGTCACGAACAAGAAACCTGTTGATCTGATTCGTAAAT 660
Query 795 CACAACTCGAGCGGCTACAGGGATCAAAATCTTGCAAAACCAGTGACTCGCAAAATCAGG 854
||||||||||||||||||||| |||||| || |||||||| ||||||||||||||||||
Sbjct 661 CACAACTCGAGCGGCTACAGGAATCAAAGTCATGCAAAACGGGTGACTCGCAAAATCAGG 720
Query 855 GGAGTTTCTTC-GTCCTCCCTGATCTCAACATGGCGCCATCCGAGGAAGAGATATTGTAC 913
||||||||||| | ||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 721 GGAGTTTCTTCTG-CCTCCCTGATCTCAACATGGCACCATCCGAGGACGAGATATTGTAC 779
Query 914 GGAACTAGCTAAAAACTGGCCTATATGAAGATTT 947
|||||||||||||| |||||||| |||||||||
Sbjct 780 GGAACTAGCTAAAA--TGGCCTATCTGAAGATTT 811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50169758772
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5