BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32050.1
Length=2070
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491529 jgi|Araly1|491529|fgenesh2_kg.7__962__AT4G32050.1 2955 0.0
Ahg940425 jgi|Araly1|940425|scaffold_600969.1 172 7e-42
> Ahg491529 jgi|Araly1|491529|fgenesh2_kg.7__962__AT4G32050.1
Length=2016
Score = 2955 bits (1600), Expect = 0.0
Identities = 1894/2031 (93%), Gaps = 40/2031 (2%)
Strand=Plus/Plus
Query 1 AACGAACGGCttttgttttagttttttttGCTTACCTTTCTCTCGACTTGGTCTACTTTT 60
|||||||||||||||||||| ||| ||||| || ||||||||||| ||||||||||
Sbjct 1 AACGAACGGCTTTTGTTTTAATTTCTTTTG----GCTGTCTCTCGACTTCGTCTACTTTT 56
Query 61 GTTACTCTTTGAGTTGGGTGATTATGGCAGCAGCACCACAGGAGGAACGATCTCCGTCGC 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 57 GTTACTCTTTGAGTTGGGTGATTATGGCAGCAG---CACAGGAGGAACGATCTCCGTCGC 113
Query 121 TTGACGATTGCCTTAAGCTATTGAAAGGGGAGAGAGACGAGCAGAGGCTCGCCGGTCTAC 180
|||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||
Sbjct 114 TTGACGATTGCCTTAAGCTATTGAAAGGAGAGCGAGACGAGCAGAGGCTCGCTGGTCTAC 173
Query 181 TTCTCGTCACCAAATTCTGTAAGAACGATGACATCGTTTCTCTCAACAAGGTCTACGAAG 240
| ||||| |||||||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct 174 TACTCGTTACCAAATTCTGTAAGAACGATGACGTCGTTTCCCTCAAGAAGGTCTACGAAG 233
Query 241 CCGTTGGTACTCACTTTCTCGACCGTCTTTTCCGTACTGGTAGTGGCAGTGGCGATGGGG 300
||||||||||||||||||||||||||||| |||| || |||| ||||||||||||||| |
Sbjct 234 CCGTTGGTACTCACTTTCTCGACCGTCTTCTCCGAACCGGTACTGGCAGTGGCGATGGAG 293
Query 301 TTGATAATCGTGATGTGTATCTGCAGATATCTATCACTGTTCTTGCTGCATTCTGCCGTG 360
|||| ||||||||||| ||||||||| ||||| | ||||||||||||||| |||||||||
Sbjct 294 TTGACAATCGTGATGTTTATCTGCAGCTATCTGTTACTGTTCTTGCTGCACTCTGCCGTG 353
Query 361 TTCCGGAGATAGCTTCTTCAGAAGAGATGGTCTCCAGAATTCCCCTTATTCTCGAAGTAA 420
|||| |||||||||||||||| ||| |||||||||||||||||||||||||||||| |||
Sbjct 354 TTCCAGAGATAGCTTCTTCAGTAGATATGGTCTCCAGAATTCCCCTTATTCTCGAAATAA 413
Query 421 TGTCCAAAGGAATAACTACAAACATGCTCGAAGATTGCTATGAGCTTCTGTATTTGGTGT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TGTCCAAAGGAATAACTACAAACATGCTCGAAGATTGCTATGAGCTTCTGTATTTGGTGT 473
Query 481 CCACGGCTTGTGAAGCTGGTCTCATGACTTTGATTAACTCTGGAGGCTTGAGAGTGATAG 540
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 474 CCACGGCTTCTGAAGCTGGTGTCATGACTTTGATTAACTCTGGAGGCTTGAGAGTGATAG 533
Query 541 CTCCCCAGATGTCTGAGTTACCTGATGGTTCACATGCCATGGAGGTTGCTATAAAGATTC 600
|||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 CTCCACAAATGTCTGATTTACCTGATGGTTCACATGCCATGGAGGTTGCTATAAAGATTC 593
Query 601 TGCAGTTATTGGTTAGTAAGCTTGATTGTGGGAGCATGACTATTGAACGCTTCTTAGAAC 660
|||| |||||||||||||||||| | | | ||| |||| ||||||||||||||||||||
Sbjct 594 TGCAATTATTGGTTAGTAAGCTTTCTGGCGAGAGAATGAATATTGAACGCTTCTTAGAAC 653
Query 661 TGTCTTTGGTGATTGCTGCTGTTGCACGGCAGTTTGCGGTGTTGCATAATGCCCTGAAGT 720
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TGTCTTTGGTGGTTGCTGCTGTTGCACGGCAGTTTGCGGTGTTGCATAATGCCCTGAAGT 713
Query 721 TTGAAGCACTCCATTTACTGTCTGCAGTCTTCTCGTCAGAGTATTCTGAACTTCTTCATG 780
|||||||||||||| |||| ||||||||||||||||| |||||||||| |||||||||||
Sbjct 714 TTGAAGCACTCCATCTACTCTCTGCAGTCTTCTCGTCTGAGTATTCTGCACTTCTTCATG 773
Query 781 AACCTCTTCGTTCCATGCCCGACAACAATTGGGCAGACTATATGCGCACAGGTGTTGTGG 840
||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct 774 AACCTCTTCGTTCCATGCCAGACAACAATTGGGCAGACTATATGCGCACGGGTATTGTGG 833
Query 841 CAATTCTGCAGAACCGTGTGGCACCTTCCGAAAAGCTTC-ATGCGTTGATTCTGGCTGAG 899
||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct 834 CAATTCTGCAGAACCGTGTGGTACCTTCCGAAAAG-TTCCATGCGTTGATTCTGGCTGAG 892
Query 900 AATATGATGTCAATATTGGGTGAAAAGTGGCTTCTCGGCGGGGTAAAATTACCCAATGTT 959
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 893 AATATGATGTCAATATTGGGTGAAAAGTGGCTTATCGGCGGGGTAAAATTACCCAATGTT 952
Query 960 GATATTCCAGCTGATAGGTGTCTTCTGTTGGTATTAGAGTCATCGCATGTTGAAATTTCT 1019
||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 953 GATCTTCCAGCTGATAGGTGTCTTCTGTTGGTATTAGAGTCATCACATGTTGAGATTTCT 1012
Query 1020 GTATTGTTAAATGATCTCGCTTACAAGAAGTATGAAGCTCCTAAAGA-TAATTCAACTGC 1078
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1013 GTATTGTTAAATGATCTCGCTTACAAGAAGTATGAAGCTCCTAA-GAATAATTCAACTGC 1071
Query 1079 TGAAGACATTCTCTTGAAGCAACGGTATCTACCCATCGTGTTTTCACTGGTAGAAAAGAT 1138
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1072 TGAAGACATTCTCTTGAAGCAACGGTATCTACCCATCATGTTTTCACTGGTAGAAAAGAT 1131
Query 1139 CATCAAATATATATCATCTGCTGGTGAAAACGAAGGGACTCTATCTGACGAAGCTGTCTT 1198
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1132 CATCAAATATATATCATCTGCTGGTGAAAATGAAGGGACTCTAACTGACGAAGCTGTCTT 1191
Query 1199 CCAAAAGGTGATTAAAATACTTAATGAGACAGTAGGAGCGGTGTTCGAATATCTCAGAGA 1258
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1192 CCAAAAGGTGATTAAAATACTTAATGAGACAGTAGGAGCGGTGCTCGAATATCTCAGAGA 1251
Query 1259 TGCAAAGGAACATGGAATTAAGAAAGGAACTGACCTTCTTGCATCTGTGCGAGTGATTGG 1318
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1252 TGCAAAGGAACATGGAATTAAGAAAGGAAATGACCTTCTTGCATCTGTGCGAGTGATTGG 1311
Query 1319 AAGCTATCTTGCGGAAACTCCTGTTGCGTGCAAAGAGCAGGTCCAGGATCTTCTGGATTA 1378
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1312 AAGCTATCTTGCTGAAACTCCTGTTGCGTGCAAAGAGCAGGTCCAGGATGTTCTGGATTA 1371
Query 1379 TATGCTTTCAGTGAAGGGCGAAGATGAATCCAGCCCGTTTTTGTCTACTTGCTTCTTGCT 1438
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 TATGCTTTCAGTGGAGGGCGAAGATGAATCCAGCCCGTTTTTGTCTACTTGCTTCTTGCT 1431
Query 1439 CCCAATGCTTTGCCAAATAACAATGAACGCAGAAGGATGTAAACTCTTGGCCTATTCAAG 1498
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1432 CCCATTGCTTTGCCAAATAACAATGAAGGCAGAAGGATGTAAACTCTTGGCCTATTCAAG 1491
Query 1499 AGGCGATGTAGCTGTCGTTGAATGTCTAATAAAATTGATTGAGCGCTGTGGTGAGAGTGT 1558
||||||| ||||||| |||||||| |||||||||||||||||||||| || ||||||||
Sbjct 1492 AGGCGATATAGCTGTTGTTGAATGCCTAATAAAATTGATTGAGCGCTCTGCTGAGAGTGC 1551
Query 1559 TGATGAGGATCGAAGCATATTCTTGGCTTGTGATACAATCATGAATATTCTTTTGAAGAG 1618
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1552 TGATGAGGATGGAAGCATATTCTTGGCTTGTGATACAATCATGAATATCCTTTTGAAG-G 1610
Query 1619 GGAAGAAATAAGCCCGCCG---GAAATTTCA-ACATTTGCCAGTCTATTGAAAGCTTTGG 1674
|| |||||||| | | ||||||| | |||||| |||||||||||||||||||||
Sbjct 1611 --AACAAATAAGCTTGATGTCAGAAATTT-ATACATTTTCCAGTCTATTGAAAGCTTTGG 1667
Query 1675 CATATTGGGCAGATGGGAGTAATGACCATTCGGTAGTAATGATGGCTGCAAGCATATGCT 1734
|||||||||||||| ||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct 1668 CATATTGGGCAGATCGGAGTAATGACAATTCGGTAGTGATGATGGCTGCAAGCATCTGCT 1727
Query 1735 CTCTGATCTTTGATTTCACATCAGAAGATGCTTTAC--AA-C----T--T---AGCAGAA 1782
|||||||||||||||||||||||||||||||||||| || | | | | ||| |
Sbjct 1728 CTCTGATCTTTGATTTCACATCAGAAGATGCTTTACTCAAACAACCTAATTTCAACAGTA 1787
Query 1783 GCTCCCTGGATAGTTTGGCCCGGCTCGTTACAAGAAGCTTGTCCTCAAGTGGCCAGGATA 1842
||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 1788 GCTCCATGGATAGTTTGGCCCGGCTCATTGCAAGAAGCTTGTCCTCATGTGGCCAGGATA 1847
Query 1843 TGTCTGATACCGCGGATCTTCTTGAAATCATAAGAGCAGGATACTCTCGGTGGATAAATC 1902
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||
Sbjct 1848 TGTCTGATACCGCGGATCTTCTTGAAATCATAAAAGCAGGATACTCTCGATGGATAGATC 1907
Query 1903 GATTTCCCACCATTATGAAACATCCCGTTGTGCAATAGAA-ACTATTAGATT-TGGTCTC 1960
|||| ||||||||||||||||||||| ||| ||||| ||| ||||||| ||| || ||||
Sbjct 1908 GATTCCCCACCATTATGAAACATCCCTTTGAGCAAT-GAAGACTATTATATTATG-TCTC 1965
Query 1961 AGGCT--GTTTCGAGGGAGAGAAATAGTC---AAAAAAGGAAATTTTGTTC 2006
||||| ||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1966 AGGCTCTGTTTCTAGGGAGAGAAATAGTATTTAAAAAAGGAAATTTTGTTC 2016
> Ahg940425 jgi|Araly1|940425|scaffold_600969.1
Length=339
Score = 172 bits (93), Expect = 7e-42
Identities = 104/109 (95%), Gaps = 2/109 (2%)
Strand=Plus/Plus
Query 565 ATGGTTCACATGCCATGGAGGTTGCTATAAAGATTCTGCAGTTATTGGTTAGTAAGCTTG 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 ATGGTTCACATGCCATGGAGGTTGCTATAAAGATTCTGCAGTTATTGGTTAGTAAGCTTG 264
Query 625 ATTGTGGGAGCATGACTATTGAACGCTTCTTAGAACTGTC-TTT-GGTG 671
|| ||| |||||||| |||||||||||||||||||||||| ||| ||||
Sbjct 265 ATGGTGAGAGCATGAATATTGAACGCTTCTTAGAACTGTCCTTTTGGTG 313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77856460780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5